Wall clock time and date at job start Mon Mar 30 2020 02:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30736 * 1 3 3 Si 1.86806 * 120.00038 * 2 1 4 4 H 1.48496 * 109.47082 * 275.20712 * 3 2 1 5 5 H 1.48502 * 109.47287 * 35.21007 * 3 2 1 6 6 H 1.48504 * 109.46767 * 155.20556 * 3 2 1 7 7 C 1.40029 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00000 * 343.02861 * 7 2 1 9 9 C 1.41550 * 119.99998 * 163.02291 * 7 2 1 10 10 C 1.41170 * 120.99683 * 154.01089 * 9 7 2 11 11 C 1.37586 * 119.01672 * 180.02562 * 10 9 7 12 12 N 1.32082 * 121.10984 * 0.02844 * 11 10 9 13 13 C 1.32472 * 122.22734 * 359.65294 * 12 11 10 14 14 N 1.39475 * 119.57569 * 180.34250 * 13 12 11 15 15 C 1.34776 * 120.00058 * 3.23706 * 14 13 12 16 16 O 1.21276 * 120.00024 * 4.86133 * 15 14 13 17 17 C 1.50700 * 119.99659 * 184.87146 * 15 14 13 18 18 N 1.46896 * 109.46782 * 179.97438 * 17 15 14 19 19 C 1.48533 * 111.00315 * 52.60223 * 18 17 15 20 20 C 1.54937 * 103.22961 * 159.71741 * 19 18 17 21 21 C 1.54590 * 102.92217 * 322.58850 * 20 19 18 22 22 C 1.47910 * 110.99949 * 169.99845 * 18 17 15 23 23 C 1.38589 * 120.84246 * 0.63717 * 13 12 11 24 24 H 0.97004 * 119.99754 * 359.97438 * 1 2 3 25 25 H 1.08007 * 120.49137 * 0.04775 * 10 9 7 26 26 H 1.07999 * 119.44565 * 180.02562 * 11 10 9 27 27 H 0.96997 * 119.99631 * 183.23430 * 14 13 12 28 28 H 1.08999 * 109.46684 * 299.99462 * 17 15 14 29 29 H 1.08998 * 109.47512 * 59.99493 * 17 15 14 30 30 H 1.08999 * 110.66475 * 278.15588 * 19 18 17 31 31 H 1.08996 * 110.66675 * 41.28673 * 19 18 17 32 32 H 1.09001 * 110.72400 * 204.22432 * 20 19 18 33 33 H 1.09006 * 110.72237 * 80.94492 * 20 19 18 34 34 H 1.09004 * 110.31008 * 263.03844 * 21 20 19 35 35 H 1.09001 * 110.31127 * 140.87406 * 21 20 19 36 36 H 1.08999 * 109.91148 * 333.50368 * 22 18 17 37 37 H 1.08992 * 109.91576 * 94.60341 * 22 18 17 38 38 H 1.07995 * 120.60528 * 179.68604 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.3789 2.1100 -1.3943 5 1 1.4983 2.6185 0.8073 6 1 3.5896 1.4109 0.5872 7 6 2.0075 -1.2127 0.0005 8 1 1.5028 -2.1275 0.2740 9 6 3.3767 -1.2396 -0.3574 10 6 4.2346 -2.2515 0.1252 11 6 5.5588 -2.2381 -0.2483 12 7 6.0335 -1.2980 -1.0454 13 6 5.2694 -0.3305 -1.5300 14 7 5.8272 0.6303 -2.3732 15 6 7.1198 0.5339 -2.7425 16 8 7.7737 -0.4334 -2.4146 17 6 7.7526 1.6283 -3.5629 18 7 9.1563 1.2892 -3.8319 19 6 9.2723 -0.0691 -4.4217 20 6 10.6632 -0.0420 -5.1037 21 6 10.7452 1.3962 -5.6647 22 6 9.7433 2.2125 -4.8272 23 6 3.9241 -0.2573 -1.2049 24 1 -0.4850 0.8401 0.0004 25 1 3.8570 -3.0250 0.7776 26 1 6.2211 -3.0092 0.1165 27 1 5.2849 1.3678 -2.6938 28 1 7.2162 1.7317 -4.5061 29 1 7.7052 2.5683 -3.0131 30 1 9.2405 -0.8307 -3.6427 31 1 8.4862 -0.2371 -5.1579 32 1 10.7119 -0.7739 -5.9099 33 1 11.4540 -0.2170 -4.3740 34 1 10.4582 1.4091 -6.7162 35 1 11.7529 1.7933 -5.5419 36 1 8.9595 2.6114 -5.4711 37 1 10.2574 3.0282 -4.3191 38 1 3.3059 0.5361 -1.5981 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820991783.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:17 Heat of formation + Delta-G solvation = -5.315923 kcal Electronic energy + Delta-G solvation = -20863.971702 eV Core-core repulsion = 17705.727074 eV Total energy + Delta-G solvation = -3158.244628 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.53222 -40.21503 -38.87202 -36.14825 -35.55617 -33.39657 -33.14885 -30.81319 -29.71581 -28.02560 -27.46751 -24.23433 -23.45081 -22.15719 -21.67143 -21.34679 -19.56058 -18.66222 -17.70051 -17.38875 -16.99482 -16.54919 -16.41842 -16.31503 -15.83103 -15.13852 -15.01278 -14.78070 -14.68863 -14.37900 -14.02617 -13.54328 -13.27106 -13.11513 -12.78348 -12.66325 -12.64453 -12.46554 -12.20003 -11.95559 -11.74487 -11.55365 -11.43027 -11.24016 -10.77315 -10.16677 -9.66406 -9.38733 -9.01660 -8.97362 -6.74773 0.53425 0.75773 1.21968 1.38452 1.47814 1.78888 1.94719 2.08418 2.65763 3.05105 3.49983 3.53093 3.76380 3.92160 4.09357 4.11655 4.27443 4.34763 4.40846 4.48335 4.57958 4.64721 4.68324 4.74583 4.77922 4.95917 5.00471 5.10028 5.14015 5.24432 5.29331 5.32602 5.53326 5.67946 5.85327 5.96207 6.04943 6.19527 6.46747 6.52575 6.66268 7.24497 7.69027 8.05955 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.031278 B = 0.004296 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.995972 B = 6515.644560 C = 7197.457129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.051 3.949 3 Si 0.970 3.030 4 H -0.242 1.242 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.467 4.467 8 H 0.066 0.934 9 C 0.112 3.888 10 C -0.287 4.287 11 C 0.129 3.871 12 N -0.574 5.574 13 C 0.368 3.632 14 N -0.658 5.658 15 C 0.493 3.507 16 O -0.500 6.500 17 C 0.037 3.963 18 N -0.523 5.523 19 C 0.030 3.970 20 C -0.123 4.123 21 C -0.125 4.125 22 C 0.033 3.967 23 C -0.331 4.331 24 H 0.300 0.700 25 H 0.119 0.881 26 H 0.158 0.842 27 H 0.424 0.576 28 H 0.091 0.909 29 H 0.129 0.871 30 H 0.076 0.924 31 H 0.033 0.967 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.060 0.940 37 H 0.089 0.911 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.188 9.073 -10.997 20.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.167 4.167 3 Si 0.794 3.206 4 H -0.167 1.167 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.497 4.497 8 H 0.084 0.916 9 C 0.104 3.896 10 C -0.311 4.311 11 C -0.023 4.023 12 N -0.294 5.294 13 C 0.140 3.860 14 N -0.306 5.306 15 C 0.280 3.720 16 O -0.370 6.370 17 C -0.094 4.094 18 N -0.248 5.248 19 C -0.097 4.097 20 C -0.161 4.161 21 C -0.163 4.163 22 C -0.094 4.094 23 C -0.356 4.356 24 H 0.111 0.889 25 H 0.137 0.863 26 H 0.175 0.825 27 H 0.262 0.738 28 H 0.109 0.891 29 H 0.147 0.853 30 H 0.094 0.906 31 H 0.051 0.949 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.078 0.922 37 H 0.107 0.893 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 15.613 8.516 -10.522 20.664 hybrid contribution -2.133 0.400 -0.218 2.182 sum 13.479 8.916 -10.740 19.405 Atomic orbital electron populations 1.69650 1.09215 1.32157 1.34432 1.26917 0.95420 1.04494 0.89845 0.85430 0.79078 0.75996 0.80142 1.16718 1.20327 1.18589 1.19530 0.93238 0.96031 1.40891 0.91595 1.17872 0.92837 0.90800 0.88103 1.22060 0.94947 1.04866 1.09182 1.22348 0.93272 0.94707 0.91934 1.67455 1.37963 1.06209 1.17802 1.18241 0.88382 0.89194 0.90214 1.43584 1.12576 1.27004 1.47465 1.21450 0.81015 0.88625 0.80915 1.90721 1.61092 1.32970 1.52256 1.22269 0.89918 0.97076 1.00105 1.64648 1.14340 1.03402 1.42428 1.23377 0.97120 0.92003 0.97241 1.22502 0.95968 0.97814 0.99817 1.22402 1.00200 0.94285 0.99445 1.23032 0.97835 0.95827 0.92728 1.21242 0.94565 1.07736 1.12060 0.88935 0.86270 0.82455 0.73767 0.89125 0.85289 0.90574 0.94869 0.90110 0.91431 0.90174 0.89798 0.92185 0.89310 0.86563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.77 13.92 21.84 0.30 -42.47 16 2 C 0.05 2.60 5.45 85.29 0.47 3.07 16 3 Si 0.97 39.92 24.42 68.60 1.68 41.59 16 4 H -0.24 -8.79 6.70 99.48 0.67 -8.12 16 5 H -0.28 -10.67 7.11 99.48 0.71 -9.96 16 6 H -0.26 -11.50 6.66 99.48 0.66 -10.83 16 7 C -0.47 -25.26 9.66 23.52 0.23 -25.04 16 8 H 0.07 3.81 8.06 -2.91 -0.02 3.79 16 9 C 0.11 5.70 5.23 -21.11 -0.11 5.59 16 10 C -0.29 -13.55 9.90 22.84 0.23 -13.33 16 11 C 0.13 5.81 11.15 84.50 0.94 6.75 16 12 N -0.57 -27.38 7.87 -193.54 -1.52 -28.90 16 13 C 0.37 16.45 7.41 132.75 0.98 17.44 16 14 N -0.66 -22.75 5.39 -308.66 -1.66 -24.41 16 15 C 0.49 16.53 7.49 87.66 0.66 17.18 16 16 O -0.50 -21.09 11.79 -3.02 -0.04 -21.12 16 17 C 0.04 0.83 5.52 85.56 0.47 1.31 16 18 N -0.52 -12.59 5.26 -887.58 -4.67 -17.26 16 19 C 0.03 0.79 5.30 86.65 0.46 1.25 16 20 C -0.12 -2.38 7.06 31.80 0.22 -2.15 16 21 C -0.13 -1.81 6.93 31.47 0.22 -1.60 16 22 C 0.03 0.53 6.70 86.44 0.58 1.11 16 23 C -0.33 -15.44 7.01 22.98 0.16 -15.28 16 24 H 0.30 13.68 8.29 -92.71 -0.77 12.91 16 25 H 0.12 5.23 8.06 -2.91 -0.02 5.21 16 26 H 0.16 5.99 8.06 -2.91 -0.02 5.96 16 27 H 0.42 11.13 8.69 -92.71 -0.81 10.32 16 28 H 0.09 1.54 7.81 -2.39 -0.02 1.52 16 29 H 0.13 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.08 2.61 5.97 -2.39 -0.01 2.60 16 31 H 0.03 0.86 8.02 -2.39 -0.02 0.84 16 32 H 0.08 1.34 8.14 -2.39 -0.02 1.33 16 33 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 34 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 35 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.06 0.79 7.57 -2.39 -0.02 0.77 16 37 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.12 5.07 4.23 -2.91 -0.01 5.05 16 Total: -1.00 -67.87 307.53 -0.22 -68.09 By element: Atomic # 1 Polarization: 27.98 SS G_CDS: 0.19 Total: 28.17 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: 5.50 Total: -3.69 kcal Atomic # 7 Polarization: -105.49 SS G_CDS: -7.55 Total: -113.04 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -0.04 Total: -21.12 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 1.68 Total: 41.59 kcal Total: -67.87 -0.22 -68.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820991783.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.774 kcal (2) G-P(sol) polarization free energy of solvation -67.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds