Wall clock time and date at job start Mon Mar 30 2020 02:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31299 * 1 3 3 Si 1.86804 * 120.00069 * 2 1 4 4 H 1.48498 * 109.47014 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46982 * 300.00370 * 3 2 1 6 6 H 1.48502 * 109.47121 * 60.00250 * 3 2 1 7 7 C 1.38984 * 119.99680 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99759 * 179.97438 * 7 2 1 9 9 N 1.37315 * 120.00277 * 359.71973 * 7 2 1 10 10 C 1.36497 * 126.06768 * 180.27814 * 9 7 2 11 11 C 1.35708 * 107.50404 * 179.97438 * 10 9 7 12 12 N 1.40508 * 126.08380 * 180.02562 * 11 10 9 13 13 C 1.34778 * 120.00029 * 179.97438 * 12 11 10 14 14 O 1.21643 * 119.99870 * 359.97438 * 13 12 11 15 15 C 1.47070 * 120.00388 * 179.97438 * 13 12 11 16 16 C 1.33003 * 120.00403 * 173.17801 * 15 13 12 17 17 C 1.50699 * 119.99734 * 346.22840 * 16 15 13 18 18 C 1.54270 * 110.03199 * 227.40889 * 17 16 15 19 19 C 1.54889 * 104.19694 * 217.10567 * 18 17 16 20 20 C 1.54889 * 102.74866 * 37.94207 * 19 18 17 21 21 C 1.53870 * 110.03272 * 110.24449 * 17 16 15 22 22 C 1.40669 * 107.82677 * 359.97438 * 11 10 9 23 23 N 1.30908 * 108.38902 * 359.75838 * 22 11 10 24 24 H 0.97007 * 119.99686 * 359.97438 * 1 2 3 25 25 H 1.07992 * 126.24700 * 359.93838 * 10 9 7 26 26 H 0.96997 * 120.00431 * 359.97438 * 12 11 10 27 27 H 1.08004 * 119.99933 * 353.18049 * 15 13 12 28 28 H 1.08002 * 120.00252 * 166.22750 * 16 15 13 29 29 H 1.08998 * 110.01699 * 348.85235 * 17 16 15 30 30 H 1.08995 * 110.48641 * 335.78468 * 18 17 16 31 31 H 1.09002 * 110.48234 * 98.42901 * 18 17 16 32 32 H 1.09003 * 110.75711 * 279.63107 * 19 18 17 33 33 H 1.08997 * 110.75789 * 156.26017 * 19 18 17 34 34 H 1.08997 * 110.49065 * 203.38006 * 20 19 18 35 35 H 1.09000 * 110.59972 * 80.79041 * 20 19 18 36 36 H 1.08998 * 110.03748 * 238.56659 * 21 17 16 37 37 H 1.09001 * 110.03593 * 359.95450 * 21 17 16 38 38 H 1.08001 * 125.80489 * 180.02562 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6178 0.0000 4 1 3.7070 1.3464 -0.0006 5 1 1.8882 2.3965 -1.2125 6 1 1.8883 2.3964 1.2125 7 6 2.0078 -1.2037 -0.0005 8 1 3.0879 -1.2037 -0.0010 9 7 1.3213 -2.3928 0.0047 10 6 1.8750 -3.6405 0.0103 11 6 0.8576 -4.5385 0.0148 12 7 0.9887 -5.9375 0.0217 13 6 -0.1106 -6.7173 0.0263 14 8 -1.2162 -6.2100 0.0249 15 6 0.0265 -8.1816 0.0329 16 6 -1.0500 -8.9498 0.1742 17 6 -2.3518 -8.3454 0.6338 18 6 -2.9663 -9.2058 1.7572 19 6 -4.4904 -9.1524 1.4860 20 6 -4.5642 -9.1981 -0.0604 21 6 -3.3677 -8.3405 -0.5218 22 6 -0.3515 -3.8196 0.0127 23 7 -0.0715 -2.5408 0.0122 24 1 -0.4850 0.8401 0.0004 25 1 2.9301 -3.8708 0.0103 26 1 1.8702 -6.3420 0.0232 27 1 1.0015 -8.6332 -0.0769 28 1 -0.9913 -10.0066 -0.0405 29 1 -2.1860 -7.3286 0.9895 30 1 -2.6034 -10.2316 1.6939 31 1 -2.7373 -8.7786 2.7335 32 1 -4.9180 -8.2244 1.8659 33 1 -4.9909 -10.0167 1.9224 34 1 -5.5013 -8.7653 -0.4106 35 1 -4.4605 -10.2221 -0.4192 36 1 -3.6957 -7.3214 -0.7264 37 1 -2.9190 -8.7745 -1.4154 38 1 -1.3422 -4.2495 0.0156 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843779016.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:07 Heat of formation + Delta-G solvation = 59.491006 kcal Electronic energy + Delta-G solvation = -20515.213536 eV Core-core repulsion = 17359.779147 eV Total energy + Delta-G solvation = -3155.434388 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.97440 -38.99051 -37.68311 -34.23366 -33.12746 -32.97173 -30.21019 -28.58904 -28.44295 -27.30975 -24.93155 -22.72293 -20.91768 -20.58845 -20.18010 -19.40945 -18.98573 -17.48912 -16.27963 -15.84143 -15.45142 -15.15597 -14.85828 -14.35806 -14.03464 -13.57643 -13.28585 -13.15215 -13.02775 -12.94624 -12.52076 -11.66113 -11.58214 -11.39104 -11.26189 -11.07094 -10.98017 -10.94304 -10.75749 -10.63903 -10.50158 -10.45839 -10.00642 -9.19359 -9.08239 -8.80614 -8.63574 -8.02312 -6.63408 -6.53580 -4.19734 1.56171 2.95816 3.06381 3.12276 3.41600 3.72314 3.84984 3.95495 4.51496 4.69958 4.75710 4.77666 4.83545 5.04536 5.16741 5.25726 5.50963 5.55834 5.67206 5.70881 5.77766 5.78479 5.90558 5.95892 6.11197 6.26888 6.28112 6.42920 6.43378 6.48936 6.57241 6.83938 6.97088 7.05223 7.20458 7.31632 7.89207 8.25167 8.35162 8.68123 8.95925 9.41081 9.70632 10.42523 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.036942 B = 0.003442 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.767726 B = 8132.862891 C = 8654.605534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.046 3.954 3 Si 0.934 3.066 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.323 4.323 8 H 0.116 0.884 9 N -0.144 5.144 10 C -0.085 4.085 11 C -0.059 4.059 12 N -0.620 5.620 13 C 0.526 3.474 14 O -0.531 6.531 15 C -0.215 4.215 16 C -0.059 4.059 17 C -0.098 4.098 18 C -0.118 4.118 19 C -0.124 4.124 20 C -0.126 4.126 21 C -0.103 4.103 22 C -0.032 4.032 23 N -0.261 5.261 24 H 0.274 0.726 25 H 0.145 0.855 26 H 0.396 0.604 27 H 0.122 0.878 28 H 0.117 0.883 29 H 0.129 0.871 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.056 0.944 38 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.279 -16.041 1.033 16.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.171 4.171 3 Si 0.758 3.242 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.455 4.455 8 H 0.134 0.866 9 N 0.088 4.912 10 C -0.236 4.236 11 C -0.164 4.164 12 N -0.261 5.261 13 C 0.316 3.684 14 O -0.411 6.411 15 C -0.236 4.236 16 C -0.079 4.079 17 C -0.116 4.116 18 C -0.155 4.155 19 C -0.162 4.162 20 C -0.163 4.163 21 C -0.141 4.141 22 C -0.208 4.208 23 N -0.092 5.092 24 H 0.084 0.916 25 H 0.162 0.838 26 H 0.229 0.771 27 H 0.140 0.860 28 H 0.135 0.865 29 H 0.146 0.854 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -2.715 -14.313 1.022 14.604 hybrid contribution 1.513 -0.522 -0.079 1.602 sum -1.202 -14.835 0.943 14.914 Atomic orbital electron populations 1.70234 1.06109 1.27800 1.35541 1.25639 0.95705 1.00243 0.95538 0.85770 0.79620 0.80322 0.78456 1.18720 1.19932 1.19928 1.19907 0.91656 0.80580 1.53381 0.86636 1.44547 1.04052 1.03291 1.39273 1.21277 0.96836 0.85438 1.20074 1.17299 0.94285 0.81484 1.23373 1.42502 1.08304 1.04513 1.70795 1.18431 0.84321 0.86973 0.78688 1.90539 1.25131 1.74867 1.50572 1.22610 0.99491 0.93232 1.08297 1.23667 0.94353 0.98708 0.91198 1.21671 0.91741 1.02949 0.95219 1.22457 0.95134 0.99434 0.98494 1.22482 0.96247 1.01438 0.96006 1.22400 0.98521 0.99708 0.95714 1.21985 0.94345 1.00491 0.97266 1.24129 0.98069 0.90675 1.07927 1.78243 0.90125 1.15169 1.25679 0.91562 0.83782 0.77077 0.85982 0.86494 0.85395 0.92130 0.91839 0.91394 0.92063 0.92000 0.92180 0.91102 0.92494 0.80651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.72 11.81 55.49 0.66 -21.07 16 2 C 0.05 1.19 5.50 -17.50 -0.10 1.10 16 3 Si 0.93 19.08 29.55 -169.99 -5.02 14.06 16 4 H -0.26 -5.11 7.11 56.52 0.40 -4.70 16 5 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 6 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 7 C -0.32 -8.64 10.25 -14.82 -0.15 -8.80 16 8 H 0.12 2.77 7.83 -52.48 -0.41 2.36 16 9 N -0.14 -4.00 3.74 -11.41 -0.04 -4.04 16 10 C -0.09 -2.04 11.50 -16.38 -0.19 -2.23 16 11 C -0.06 -1.37 6.90 -83.87 -0.58 -1.95 16 12 N -0.62 -11.23 5.46 -11.07 -0.06 -11.29 16 13 C 0.53 9.26 7.54 -12.68 -0.10 9.16 16 14 O -0.53 -10.93 10.29 5.24 0.05 -10.88 16 15 C -0.22 -2.76 10.01 -37.82 -0.38 -3.14 16 16 C -0.06 -0.70 8.46 -36.12 -0.31 -1.00 16 17 C -0.10 -1.29 2.39 -90.65 -0.22 -1.51 16 18 C -0.12 -1.28 6.35 -25.07 -0.16 -1.44 16 19 C -0.12 -1.27 6.91 -24.74 -0.17 -1.44 16 20 C -0.13 -1.31 6.83 -25.07 -0.17 -1.48 16 21 C -0.10 -1.32 6.33 -25.61 -0.16 -1.48 16 22 C -0.03 -0.86 10.85 -17.03 -0.18 -1.05 16 23 N -0.26 -7.68 10.39 30.80 0.32 -7.36 16 24 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 25 H 0.14 2.88 8.06 -52.49 -0.42 2.45 16 26 H 0.40 5.57 8.81 -40.82 -0.36 5.21 16 27 H 0.12 1.18 8.06 -52.48 -0.42 0.75 16 28 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 29 H 0.13 2.15 4.96 -52.34 -0.26 1.89 16 30 H 0.06 0.57 7.85 -51.93 -0.41 0.17 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.06 0.70 7.67 -51.93 -0.40 0.30 16 38 H 0.18 4.59 5.91 -52.49 -0.31 4.28 16 LS Contribution 316.73 15.07 4.77 4.77 Total: -1.00 -32.40 316.73 -7.27 -39.67 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -5.09 Total: 11.39 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: -2.86 Total: -15.26 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: 0.87 Total: -43.76 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.05 Total: -10.88 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.02 Total: 14.06 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.40 -7.27 -39.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843779016.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.161 kcal (2) G-P(sol) polarization free energy of solvation -32.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds