Wall clock time and date at job start Mon Mar 30 2020 02:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31299 * 1 3 3 Si 1.86804 * 120.00069 * 2 1 4 4 H 1.48498 * 109.47014 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46982 * 300.00370 * 3 2 1 6 6 H 1.48502 * 109.47121 * 60.00250 * 3 2 1 7 7 C 1.38984 * 119.99680 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99759 * 179.97438 * 7 2 1 9 9 N 1.37315 * 120.00277 * 359.71973 * 7 2 1 10 10 C 1.36497 * 126.06768 * 180.27814 * 9 7 2 11 11 C 1.35708 * 107.50404 * 179.97438 * 10 9 7 12 12 N 1.40508 * 126.08380 * 180.02562 * 11 10 9 13 13 C 1.34778 * 120.00029 * 179.97438 * 12 11 10 14 14 O 1.21643 * 119.99870 * 359.97438 * 13 12 11 15 15 C 1.47070 * 120.00388 * 179.97438 * 13 12 11 16 16 C 1.33003 * 120.00403 * 173.17801 * 15 13 12 17 17 C 1.50699 * 119.99734 * 346.22840 * 16 15 13 18 18 C 1.54270 * 110.03199 * 227.40889 * 17 16 15 19 19 C 1.54889 * 104.19694 * 217.10567 * 18 17 16 20 20 C 1.54889 * 102.74866 * 37.94207 * 19 18 17 21 21 C 1.53870 * 110.03272 * 110.24449 * 17 16 15 22 22 C 1.40669 * 107.82677 * 359.97438 * 11 10 9 23 23 N 1.30908 * 108.38902 * 359.75838 * 22 11 10 24 24 H 0.97007 * 119.99686 * 359.97438 * 1 2 3 25 25 H 1.07992 * 126.24700 * 359.93838 * 10 9 7 26 26 H 0.96997 * 120.00431 * 359.97438 * 12 11 10 27 27 H 1.08004 * 119.99933 * 353.18049 * 15 13 12 28 28 H 1.08002 * 120.00252 * 166.22750 * 16 15 13 29 29 H 1.08998 * 110.01699 * 348.85235 * 17 16 15 30 30 H 1.08995 * 110.48641 * 335.78468 * 18 17 16 31 31 H 1.09002 * 110.48234 * 98.42901 * 18 17 16 32 32 H 1.09003 * 110.75711 * 279.63107 * 19 18 17 33 33 H 1.08997 * 110.75789 * 156.26017 * 19 18 17 34 34 H 1.08997 * 110.49065 * 203.38006 * 20 19 18 35 35 H 1.09000 * 110.59972 * 80.79041 * 20 19 18 36 36 H 1.08998 * 110.03748 * 238.56659 * 21 17 16 37 37 H 1.09001 * 110.03593 * 359.95450 * 21 17 16 38 38 H 1.08001 * 125.80489 * 180.02562 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6178 0.0000 4 1 3.7070 1.3464 -0.0006 5 1 1.8882 2.3965 -1.2125 6 1 1.8883 2.3964 1.2125 7 6 2.0078 -1.2037 -0.0005 8 1 3.0879 -1.2037 -0.0010 9 7 1.3213 -2.3928 0.0047 10 6 1.8750 -3.6405 0.0103 11 6 0.8576 -4.5385 0.0148 12 7 0.9887 -5.9375 0.0217 13 6 -0.1106 -6.7173 0.0263 14 8 -1.2162 -6.2100 0.0249 15 6 0.0265 -8.1816 0.0329 16 6 -1.0500 -8.9498 0.1742 17 6 -2.3518 -8.3454 0.6338 18 6 -2.9663 -9.2058 1.7572 19 6 -4.4904 -9.1524 1.4860 20 6 -4.5642 -9.1981 -0.0604 21 6 -3.3677 -8.3405 -0.5218 22 6 -0.3515 -3.8196 0.0127 23 7 -0.0715 -2.5408 0.0122 24 1 -0.4850 0.8401 0.0004 25 1 2.9301 -3.8708 0.0103 26 1 1.8702 -6.3420 0.0232 27 1 1.0015 -8.6332 -0.0769 28 1 -0.9913 -10.0066 -0.0405 29 1 -2.1860 -7.3286 0.9895 30 1 -2.6034 -10.2316 1.6939 31 1 -2.7373 -8.7786 2.7335 32 1 -4.9180 -8.2244 1.8659 33 1 -4.9909 -10.0167 1.9224 34 1 -5.5013 -8.7653 -0.4106 35 1 -4.4605 -10.2221 -0.4192 36 1 -3.6957 -7.3214 -0.7264 37 1 -2.9190 -8.7745 -1.4154 38 1 -1.3422 -4.2495 0.0156 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843779016.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:07 Heat of formation + Delta-G solvation = 38.885340 kcal Electronic energy + Delta-G solvation = -20516.107064 eV Core-core repulsion = 17359.779147 eV Total energy + Delta-G solvation = -3156.327917 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.70576 -40.50956 -38.80712 -35.91991 -34.92271 -34.06066 -32.21980 -29.97461 -29.49740 -28.67701 -26.82403 -24.07243 -22.79585 -21.48788 -21.36251 -21.17542 -20.29718 -19.26484 -17.57629 -17.39182 -17.09779 -16.54104 -16.03013 -15.86101 -15.60937 -15.00477 -14.90657 -14.51315 -14.33924 -14.16625 -13.66499 -13.45385 -13.25490 -12.94432 -12.83150 -12.56660 -12.03104 -11.92623 -11.91898 -11.86724 -11.68258 -11.50937 -11.41325 -10.98451 -10.80991 -10.25412 -10.08493 -9.95734 -8.47077 -8.46741 -6.23416 0.47772 1.29339 1.39593 1.58863 1.74350 2.08501 2.16209 2.43049 2.74232 2.97435 3.09467 3.79484 3.84804 3.87576 4.09561 4.31215 4.44044 4.57954 4.60849 4.68071 4.74296 4.82087 4.82931 4.87907 5.00282 5.02021 5.11263 5.12897 5.20693 5.30240 5.37833 5.43370 5.50080 5.54810 5.60850 5.90148 5.97239 6.34878 6.75170 6.87212 7.46008 7.53114 7.70554 8.52858 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.036942 B = 0.003442 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.767726 B = 8132.862891 C = 8654.605534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C -0.008 4.008 3 Si 1.021 2.979 4 H -0.240 1.240 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.354 4.354 8 H 0.141 0.859 9 N -0.170 5.170 10 C -0.084 4.084 11 C -0.042 4.042 12 N -0.617 5.617 13 C 0.517 3.483 14 O -0.567 6.567 15 C -0.224 4.224 16 C -0.041 4.041 17 C -0.107 4.107 18 C -0.112 4.112 19 C -0.125 4.125 20 C -0.120 4.120 21 C -0.104 4.104 22 C -0.060 4.060 23 N -0.311 5.311 24 H 0.276 0.724 25 H 0.187 0.813 26 H 0.418 0.582 27 H 0.165 0.835 28 H 0.163 0.837 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.084 0.916 34 H 0.061 0.939 35 H 0.083 0.917 36 H 0.034 0.966 37 H 0.062 0.938 38 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.771 -18.700 1.047 18.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.219 4.219 3 Si 0.839 3.161 4 H -0.163 1.163 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.485 4.485 8 H 0.158 0.842 9 N 0.061 4.939 10 C -0.234 4.234 11 C -0.149 4.149 12 N -0.261 5.261 13 C 0.309 3.691 14 O -0.449 6.449 15 C -0.244 4.244 16 C -0.060 4.060 17 C -0.125 4.125 18 C -0.150 4.150 19 C -0.162 4.162 20 C -0.157 4.157 21 C -0.142 4.142 22 C -0.235 4.235 23 N -0.144 5.144 24 H 0.085 0.915 25 H 0.204 0.796 26 H 0.255 0.745 27 H 0.182 0.818 28 H 0.180 0.820 29 H 0.103 0.897 30 H 0.106 0.894 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.103 0.897 34 H 0.080 0.920 35 H 0.101 0.899 36 H 0.053 0.947 37 H 0.081 0.919 38 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -0.635 -17.036 1.038 17.079 hybrid contribution 0.776 0.129 -0.072 0.790 sum 0.141 -16.906 0.967 16.935 Atomic orbital electron populations 1.70419 1.08464 1.28969 1.37557 1.26903 0.96490 1.04381 0.94166 0.84520 0.79035 0.74326 0.78191 1.16297 1.19771 1.19768 1.20655 0.92947 0.80922 1.54000 0.84202 1.44843 1.03619 1.04817 1.40621 1.22012 0.98806 0.84285 1.18338 1.17389 0.92748 0.84089 1.20657 1.42495 1.10004 1.02227 1.71351 1.19459 0.83419 0.89167 0.77011 1.90568 1.26666 1.76126 1.51553 1.22656 1.02009 0.89643 1.10099 1.24036 0.92714 1.00628 0.88665 1.21593 0.93302 1.01448 0.96190 1.22438 0.95322 1.00214 0.96995 1.22502 0.96056 1.01702 0.95963 1.22385 0.97264 1.00324 0.95741 1.21952 0.95545 0.99102 0.97590 1.24167 0.99052 0.90869 1.09437 1.78131 0.92056 1.16681 1.27488 0.91464 0.79608 0.74457 0.81767 0.82009 0.89731 0.89404 0.92637 0.93040 0.89699 0.91986 0.89853 0.94665 0.91878 0.81591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -48.69 11.81 21.66 0.26 -48.43 16 2 C -0.01 -0.43 5.50 84.95 0.47 0.03 16 3 Si 1.02 39.27 29.55 68.60 2.03 41.30 16 4 H -0.24 -8.25 7.11 99.48 0.71 -7.54 16 5 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 6 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 7 C -0.35 -19.15 10.25 84.01 0.86 -18.29 16 8 H 0.14 6.56 7.83 -2.91 -0.02 6.53 16 9 N -0.17 -9.67 3.74 -190.00 -0.71 -10.38 16 10 C -0.08 -4.00 11.50 83.38 0.96 -3.04 16 11 C -0.04 -2.01 6.90 37.76 0.26 -1.74 16 12 N -0.62 -21.78 5.46 -307.19 -1.68 -23.45 16 13 C 0.52 18.04 7.54 86.56 0.65 18.70 16 14 O -0.57 -24.49 10.29 -4.17 -0.04 -24.53 16 15 C -0.22 -5.09 10.01 23.42 0.23 -4.86 16 16 C -0.04 -0.83 8.46 24.52 0.21 -0.62 16 17 C -0.11 -2.75 2.39 -10.82 -0.03 -2.77 16 18 C -0.11 -2.23 6.35 31.67 0.20 -2.02 16 19 C -0.12 -2.36 6.91 31.89 0.22 -2.14 16 20 C -0.12 -2.30 6.83 31.67 0.22 -2.08 16 21 C -0.10 -2.64 6.33 31.32 0.20 -2.44 16 22 C -0.06 -3.37 10.85 85.42 0.93 -2.44 16 23 N -0.31 -19.30 10.39 -56.45 -0.59 -19.88 16 24 H 0.28 14.89 8.31 -92.70 -0.77 14.12 16 25 H 0.19 6.97 8.06 -2.91 -0.02 6.94 16 26 H 0.42 10.74 8.81 -92.71 -0.82 9.93 16 27 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 28 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 29 H 0.08 2.99 4.96 -8.95 -0.04 2.95 16 30 H 0.09 1.29 7.85 -2.39 -0.02 1.27 16 31 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.06 1.48 7.67 -2.39 -0.02 1.46 16 38 H 0.17 9.42 5.91 -2.91 -0.02 9.41 16 Total: -1.00 -76.90 316.73 4.87 -72.03 By element: Atomic # 1 Polarization: 36.86 SS G_CDS: 0.23 Total: 37.08 kcal Atomic # 6 Polarization: -29.11 SS G_CDS: 5.38 Total: -23.73 kcal Atomic # 7 Polarization: -99.43 SS G_CDS: -2.72 Total: -102.15 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: -0.04 Total: -24.53 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 2.03 Total: 41.30 kcal Total: -76.90 4.87 -72.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843779016.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.912 kcal (2) G-P(sol) polarization free energy of solvation -76.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds