Wall clock time and date at job start Mon Mar 30 2020 02:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31288 * 1 3 3 Si 1.86800 * 120.00026 * 2 1 4 4 H 1.48498 * 109.47070 * 240.00232 * 3 2 1 5 5 H 1.48501 * 109.46969 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46968 * 119.99971 * 3 2 1 7 7 C 1.38987 * 120.00104 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00004 * 180.02562 * 7 2 1 9 9 N 1.37320 * 119.99931 * 359.97438 * 7 2 1 10 10 C 1.36496 * 126.07290 * 180.28469 * 9 7 2 11 11 C 1.35678 * 107.51206 * 180.16595 * 10 9 7 12 12 N 1.40590 * 126.08152 * 179.84566 * 11 10 9 13 13 C 1.34779 * 119.99792 * 179.71255 * 12 11 10 14 14 O 1.21302 * 120.00113 * 359.97438 * 13 12 11 15 15 C 1.50704 * 119.99768 * 179.97438 * 13 12 11 16 16 C 1.53950 * 113.57669 * 180.02562 * 15 13 12 17 17 C 1.52906 * 86.78208 * 220.58456 * 16 15 13 18 18 C 1.52913 * 121.13846 * 150.61759 * 17 16 15 19 19 C 1.53952 * 86.78179 * 100.82243 * 18 17 16 20 20 C 1.53068 * 121.06931 * 259.16126 * 17 16 15 21 21 C 1.52907 * 88.04368 * 24.89826 * 17 16 15 22 22 C 1.40648 * 107.83443 * 359.57665 * 11 10 9 23 23 N 1.30908 * 108.38971 * 0.26394 * 22 11 10 24 24 H 0.97005 * 120.00227 * 0.02562 * 1 2 3 25 25 H 1.08001 * 126.24191 * 0.02562 * 10 9 7 26 26 H 0.97000 * 120.00313 * 359.70671 * 12 11 10 27 27 H 1.09000 * 112.82433 * 311.08720 * 15 13 12 28 28 H 1.09003 * 113.66331 * 106.11617 * 16 15 13 29 29 H 1.08998 * 113.74962 * 335.06356 * 16 15 13 30 30 H 1.09000 * 113.66161 * 346.35132 * 18 17 16 31 31 H 1.09002 * 113.66537 * 215.28969 * 18 17 16 32 32 H 1.09002 * 113.58142 * 139.33940 * 19 18 17 33 33 H 1.09004 * 113.57653 * 270.05541 * 19 18 17 34 34 H 1.09006 * 113.66752 * 144.67391 * 20 17 16 35 35 H 1.09001 * 113.71350 * 13.57398 * 20 17 16 36 36 H 1.09008 * 113.66358 * 89.56934 * 21 17 16 37 37 H 1.08997 * 113.66794 * 220.62745 * 21 17 16 38 38 H 1.07996 * 125.80745 * 180.24387 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6177 0.0000 4 1 3.1006 1.6964 -1.2125 5 1 1.2819 2.7464 -0.0006 6 1 3.1006 1.6964 1.2125 7 6 2.0078 -1.2036 -0.0005 8 1 3.0879 -1.2036 -0.0001 9 7 1.3212 -2.3929 -0.0005 10 6 1.8748 -3.6405 0.0045 11 6 0.8577 -4.5385 -0.0013 12 7 0.9890 -5.9382 -0.0019 13 6 -0.1102 -6.7182 -0.0021 14 8 -1.2127 -6.2124 -0.0011 15 6 0.0306 -8.2186 -0.0034 16 6 -1.3167 -8.9635 -0.0040 17 6 -0.6806 -9.9375 0.9883 18 6 -1.5268 -10.6695 2.0307 19 6 -1.4601 -11.8931 1.0987 20 6 -0.1571 -11.3013 0.5313 21 6 0.2777 -8.8170 1.3934 22 6 -0.3513 -3.8199 -0.0001 23 7 -0.0717 -2.5410 0.0004 24 1 -0.4851 0.8401 -0.0004 25 1 2.9300 -3.8709 0.0095 26 1 1.8707 -6.3427 -0.0024 27 1 0.7271 -8.5773 -0.7612 28 1 -1.5656 -9.4169 -0.9635 29 1 -2.1386 -8.3845 0.4172 30 1 -2.5307 -10.2606 2.1446 31 1 -1.0172 -10.8167 2.9829 32 1 -1.3173 -12.8360 1.6266 33 1 -2.2728 -11.9334 0.3733 34 1 0.7382 -11.6263 1.0614 35 1 -0.0682 -11.3965 -0.5509 36 1 -0.0949 -8.1955 2.2077 37 1 1.3026 -9.1532 1.5502 38 1 -1.3419 -4.2500 0.0001 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843779230.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:44 Heat of formation + Delta-G solvation = 85.036462 kcal Electronic energy + Delta-G solvation = -20491.940906 eV Core-core repulsion = 17337.614252 eV Total energy + Delta-G solvation = -3154.326654 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.81936 -39.61839 -38.21066 -34.65003 -34.09497 -33.06790 -30.20410 -27.96591 -26.04896 -25.85256 -25.61515 -24.40813 -22.02400 -20.86127 -19.67151 -19.30209 -18.03596 -17.47636 -16.57623 -15.66936 -15.48871 -15.41728 -15.03742 -14.62942 -14.19333 -13.82547 -13.24468 -12.98897 -12.83488 -12.72260 -12.46819 -12.12044 -12.06161 -11.64043 -11.38607 -11.22877 -11.10486 -10.99024 -10.90185 -10.54069 -10.33935 -10.20261 -10.07940 -10.04929 -9.11921 -8.98660 -8.75206 -8.01845 -6.64446 -6.52469 -4.19269 2.88620 3.06236 3.07874 3.10335 3.67755 3.71454 3.92004 4.27428 4.36538 4.44880 4.50512 4.62221 4.68170 4.75548 4.87815 5.05249 5.28123 5.32029 5.47086 5.49615 5.55053 5.68178 5.71296 5.78247 5.82913 5.87372 5.96441 6.20740 6.28047 6.30986 6.42754 6.52501 6.95225 7.01564 7.19132 7.29944 7.89596 8.25390 8.35614 8.68557 8.95768 9.41989 9.71358 10.43603 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.064933 B = 0.003095 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.107606 B = 9043.756848 C = 9245.190254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.046 3.954 3 Si 0.934 3.066 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.324 4.324 8 H 0.115 0.885 9 N -0.144 5.144 10 C -0.085 4.085 11 C -0.059 4.059 12 N -0.625 5.625 13 C 0.507 3.493 14 O -0.537 6.537 15 C -0.130 4.130 16 C -0.089 4.089 17 C -0.107 4.107 18 C -0.128 4.128 19 C -0.140 4.140 20 C -0.117 4.117 21 C -0.109 4.109 22 C -0.035 4.035 23 N -0.261 5.261 24 H 0.275 0.725 25 H 0.145 0.855 26 H 0.396 0.604 27 H 0.107 0.893 28 H 0.070 0.930 29 H 0.099 0.901 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.579 -18.472 1.623 18.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.171 4.171 3 Si 0.758 3.242 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.456 4.456 8 H 0.133 0.867 9 N 0.088 4.912 10 C -0.236 4.236 11 C -0.164 4.164 12 N -0.267 5.267 13 C 0.293 3.707 14 O -0.415 6.415 15 C -0.151 4.151 16 C -0.126 4.126 17 C -0.107 4.107 18 C -0.165 4.165 19 C -0.177 4.177 20 C -0.154 4.154 21 C -0.147 4.147 22 C -0.210 4.210 23 N -0.092 5.092 24 H 0.086 0.914 25 H 0.162 0.838 26 H 0.229 0.771 27 H 0.125 0.875 28 H 0.088 0.912 29 H 0.118 0.882 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.087 0.913 36 H 0.106 0.894 37 H 0.092 0.908 38 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 1.100 -16.754 1.617 16.868 hybrid contribution 1.420 -0.309 -0.045 1.454 sum 2.520 -17.063 1.572 17.320 Atomic orbital electron populations 1.70209 1.06118 1.28026 1.35412 1.25633 0.95698 1.00232 0.95542 0.85903 0.79137 0.79699 0.79436 1.19188 1.20151 1.19185 1.19808 0.91605 0.80605 1.53602 0.86730 1.44534 1.04039 1.03275 1.39317 1.21264 0.96817 0.85430 1.20120 1.17319 0.94230 0.81570 1.23317 1.42572 1.08325 1.04407 1.71352 1.20244 0.84365 0.88280 0.77796 1.90573 1.26006 1.74843 1.50051 1.22651 1.00784 0.91824 0.99870 1.22546 0.96189 0.95201 0.98715 1.22477 0.97607 0.92967 0.97695 1.22746 1.00241 0.96345 0.97215 1.22812 0.98100 0.97515 0.99308 1.22688 0.97536 0.94367 1.00833 1.22724 0.99675 0.96707 0.95597 1.24105 0.98064 0.90732 1.08128 1.78244 0.90124 1.15121 1.25708 0.91450 0.83789 0.77136 0.87502 0.91166 0.88225 0.91267 0.90074 0.91725 0.90265 0.89929 0.91339 0.89378 0.90848 0.80783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.89 11.81 55.49 0.66 -21.24 16 2 C 0.05 1.21 5.50 -17.51 -0.10 1.11 16 3 Si 0.93 19.16 29.55 -169.99 -5.02 14.13 16 4 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 5 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 6 H -0.27 -5.31 7.11 56.52 0.40 -4.90 16 7 C -0.32 -8.71 10.25 -14.82 -0.15 -8.87 16 8 H 0.12 2.74 7.83 -52.49 -0.41 2.33 16 9 N -0.14 -4.03 3.74 -11.41 -0.04 -4.07 16 10 C -0.09 -2.06 11.49 -16.39 -0.19 -2.25 16 11 C -0.06 -1.39 6.90 -83.84 -0.58 -1.97 16 12 N -0.62 -11.35 5.47 -10.00 -0.05 -11.41 16 13 C 0.51 8.97 7.33 -10.98 -0.08 8.89 16 14 O -0.54 -11.74 13.05 5.54 0.07 -11.66 16 15 C -0.13 -1.60 4.15 -90.79 -0.38 -1.98 16 16 C -0.09 -1.05 7.16 -26.28 -0.19 -1.24 16 17 C -0.11 -1.04 1.11 -154.63 -0.17 -1.22 16 18 C -0.13 -1.14 7.84 -26.28 -0.21 -1.35 16 19 C -0.14 -1.09 8.08 -25.75 -0.21 -1.29 16 20 C -0.12 -0.93 7.85 -26.20 -0.21 -1.14 16 21 C -0.11 -1.17 7.39 -26.28 -0.19 -1.37 16 22 C -0.03 -0.94 10.85 -17.04 -0.18 -1.13 16 23 N -0.26 -7.75 10.40 30.80 0.32 -7.43 16 24 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 25 H 0.14 2.89 8.06 -52.49 -0.42 2.46 16 26 H 0.40 5.58 8.83 -40.82 -0.36 5.22 16 27 H 0.11 1.10 8.14 -51.93 -0.42 0.67 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.10 1.39 7.43 -51.93 -0.39 1.00 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.09 1.08 8.09 -51.92 -0.42 0.66 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.18 4.69 5.92 -52.49 -0.31 4.38 16 LS Contribution 318.99 15.07 4.81 4.81 Total: -1.00 -33.28 318.99 -7.35 -40.63 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -5.25 Total: 10.03 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: -2.83 Total: -13.79 kcal Atomic # 7 Polarization: -45.03 SS G_CDS: 0.88 Total: -44.15 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.07 Total: -11.66 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.02 Total: 14.13 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.28 -7.35 -40.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843779230.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.664 kcal (2) G-P(sol) polarization free energy of solvation -33.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds