Wall clock time and date at job start Mon Mar 30 2020 02:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31288 * 1 3 3 Si 1.86800 * 120.00026 * 2 1 4 4 H 1.48498 * 109.47070 * 240.00232 * 3 2 1 5 5 H 1.48501 * 109.46969 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46968 * 119.99971 * 3 2 1 7 7 C 1.38987 * 120.00104 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00004 * 180.02562 * 7 2 1 9 9 N 1.37320 * 119.99931 * 359.97438 * 7 2 1 10 10 C 1.36496 * 126.07290 * 180.28469 * 9 7 2 11 11 C 1.35678 * 107.51206 * 180.16595 * 10 9 7 12 12 N 1.40590 * 126.08152 * 179.84566 * 11 10 9 13 13 C 1.34779 * 119.99792 * 179.71255 * 12 11 10 14 14 O 1.21302 * 120.00113 * 359.97438 * 13 12 11 15 15 C 1.50704 * 119.99768 * 179.97438 * 13 12 11 16 16 C 1.53950 * 113.57669 * 180.02562 * 15 13 12 17 17 C 1.52906 * 86.78208 * 220.58456 * 16 15 13 18 18 C 1.52913 * 121.13846 * 150.61759 * 17 16 15 19 19 C 1.53952 * 86.78179 * 100.82243 * 18 17 16 20 20 C 1.53068 * 121.06931 * 259.16126 * 17 16 15 21 21 C 1.52907 * 88.04368 * 24.89826 * 17 16 15 22 22 C 1.40648 * 107.83443 * 359.57665 * 11 10 9 23 23 N 1.30908 * 108.38971 * 0.26394 * 22 11 10 24 24 H 0.97005 * 120.00227 * 0.02562 * 1 2 3 25 25 H 1.08001 * 126.24191 * 0.02562 * 10 9 7 26 26 H 0.97000 * 120.00313 * 359.70671 * 12 11 10 27 27 H 1.09000 * 112.82433 * 311.08720 * 15 13 12 28 28 H 1.09003 * 113.66331 * 106.11617 * 16 15 13 29 29 H 1.08998 * 113.74962 * 335.06356 * 16 15 13 30 30 H 1.09000 * 113.66161 * 346.35132 * 18 17 16 31 31 H 1.09002 * 113.66537 * 215.28969 * 18 17 16 32 32 H 1.09002 * 113.58142 * 139.33940 * 19 18 17 33 33 H 1.09004 * 113.57653 * 270.05541 * 19 18 17 34 34 H 1.09006 * 113.66752 * 144.67391 * 20 17 16 35 35 H 1.09001 * 113.71350 * 13.57398 * 20 17 16 36 36 H 1.09008 * 113.66358 * 89.56934 * 21 17 16 37 37 H 1.08997 * 113.66794 * 220.62745 * 21 17 16 38 38 H 1.07996 * 125.80745 * 180.24387 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6177 0.0000 4 1 3.1006 1.6964 -1.2125 5 1 1.2819 2.7464 -0.0006 6 1 3.1006 1.6964 1.2125 7 6 2.0078 -1.2036 -0.0005 8 1 3.0879 -1.2036 -0.0001 9 7 1.3212 -2.3929 -0.0005 10 6 1.8748 -3.6405 0.0045 11 6 0.8577 -4.5385 -0.0013 12 7 0.9890 -5.9382 -0.0019 13 6 -0.1102 -6.7182 -0.0021 14 8 -1.2127 -6.2124 -0.0011 15 6 0.0306 -8.2186 -0.0034 16 6 -1.3167 -8.9635 -0.0040 17 6 -0.6806 -9.9375 0.9883 18 6 -1.5268 -10.6695 2.0307 19 6 -1.4601 -11.8931 1.0987 20 6 -0.1571 -11.3013 0.5313 21 6 0.2777 -8.8170 1.3934 22 6 -0.3513 -3.8199 -0.0001 23 7 -0.0717 -2.5410 0.0004 24 1 -0.4851 0.8401 -0.0004 25 1 2.9300 -3.8709 0.0095 26 1 1.8707 -6.3427 -0.0024 27 1 0.7271 -8.5773 -0.7612 28 1 -1.5656 -9.4169 -0.9635 29 1 -2.1386 -8.3845 0.4172 30 1 -2.5307 -10.2606 2.1446 31 1 -1.0172 -10.8167 2.9829 32 1 -1.3173 -12.8360 1.6266 33 1 -2.2728 -11.9334 0.3733 34 1 0.7382 -11.6263 1.0614 35 1 -0.0682 -11.3965 -0.5509 36 1 -0.0949 -8.1955 2.2077 37 1 1.3026 -9.1532 1.5502 38 1 -1.3419 -4.2500 0.0001 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843779230.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:43 Heat of formation + Delta-G solvation = 63.760666 kcal Electronic energy + Delta-G solvation = -20492.863494 eV Core-core repulsion = 17337.614252 eV Total energy + Delta-G solvation = -3155.249242 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.95926 -41.31536 -39.66171 -35.94435 -35.48287 -34.90276 -32.24182 -29.80512 -27.30617 -26.78769 -26.55980 -25.90683 -23.11274 -22.70614 -21.32114 -20.86729 -19.32821 -18.78309 -17.93978 -17.40307 -16.94669 -16.39638 -16.20668 -15.93174 -15.71166 -15.39356 -14.98853 -14.83034 -13.97190 -13.62016 -13.49130 -13.45575 -13.27830 -12.92226 -12.89429 -12.85666 -12.82695 -12.14027 -11.89361 -11.84645 -11.73894 -11.12424 -10.99467 -10.98011 -10.90068 -10.82365 -10.37349 -10.10473 -8.51671 -8.46977 -6.24436 1.23431 1.39337 1.55237 1.56166 1.87405 2.07628 2.35955 2.52648 2.93228 3.08857 3.48167 3.57049 3.62720 3.75079 3.91158 4.02177 4.28850 4.43622 4.46633 4.61601 4.62083 4.77580 4.84788 4.91738 4.97646 4.99855 5.02676 5.07498 5.13657 5.15586 5.16666 5.29487 5.39036 5.52141 5.59684 5.65145 5.95902 6.32429 6.73856 6.81673 7.43879 7.49163 7.68686 8.52432 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.064933 B = 0.003095 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.107606 B = 9043.756848 C = 9245.190254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C -0.008 4.008 3 Si 1.021 2.979 4 H -0.253 1.253 5 H -0.278 1.278 6 H -0.253 1.253 7 C -0.355 4.355 8 H 0.142 0.858 9 N -0.169 5.169 10 C -0.083 4.083 11 C -0.045 4.045 12 N -0.616 5.616 13 C 0.503 3.497 14 O -0.584 6.584 15 C -0.120 4.120 16 C -0.097 4.097 17 C -0.103 4.103 18 C -0.135 4.135 19 C -0.137 4.137 20 C -0.107 4.107 21 C -0.104 4.104 22 C -0.064 4.064 23 N -0.311 5.311 24 H 0.276 0.724 25 H 0.189 0.811 26 H 0.419 0.581 27 H 0.142 0.858 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.102 0.898 38 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.602 -20.385 1.562 21.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.219 4.219 3 Si 0.839 3.161 4 H -0.177 1.177 5 H -0.203 1.203 6 H -0.176 1.176 7 C -0.486 4.486 8 H 0.159 0.841 9 N 0.062 4.938 10 C -0.233 4.233 11 C -0.151 4.151 12 N -0.261 5.261 13 C 0.291 3.709 14 O -0.464 6.464 15 C -0.141 4.141 16 C -0.135 4.135 17 C -0.103 4.103 18 C -0.172 4.172 19 C -0.174 4.174 20 C -0.144 4.144 21 C -0.142 4.142 22 C -0.239 4.239 23 N -0.143 5.143 24 H 0.086 0.914 25 H 0.206 0.794 26 H 0.257 0.743 27 H 0.159 0.841 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.108 0.892 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.117 0.883 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.120 0.880 38 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 4.159 -18.736 1.558 19.255 hybrid contribution 0.420 0.140 -0.013 0.443 sum 4.579 -18.596 1.545 19.213 Atomic orbital electron populations 1.70402 1.08495 1.29157 1.37384 1.26917 0.96480 1.04436 0.94117 0.84635 0.77519 0.73605 0.80316 1.17653 1.20340 1.17645 1.20598 0.92987 0.80904 1.54128 0.84101 1.44849 1.03592 1.04856 1.40485 1.22015 0.98827 0.84199 1.18229 1.17418 0.92690 0.84181 1.20789 1.42570 1.10039 1.02128 1.71356 1.21362 0.83317 0.90507 0.75665 1.90564 1.27954 1.76213 1.51619 1.22788 1.01995 0.87115 1.02169 1.22537 0.95242 0.95780 0.99921 1.22440 0.97210 0.93338 0.97291 1.22819 0.99558 0.97023 0.97796 1.22808 0.98174 0.97505 0.98906 1.22708 0.98011 0.92135 1.01549 1.22717 1.01499 0.96408 0.93579 1.24135 0.99037 0.91009 1.09708 1.78138 0.92102 1.16554 1.27539 0.91415 0.79435 0.74349 0.84074 0.90061 0.91318 0.92581 0.89184 0.90360 0.90456 0.88285 0.90564 0.91553 0.87997 0.81880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -48.71 11.81 21.66 0.26 -48.45 16 2 C -0.01 -0.43 5.50 84.95 0.47 0.04 16 3 Si 1.02 39.05 29.55 68.60 2.03 41.08 16 4 H -0.25 -8.99 7.11 99.48 0.71 -8.29 16 5 H -0.28 -10.58 7.11 99.48 0.71 -9.87 16 6 H -0.25 -8.99 7.11 99.48 0.71 -8.28 16 7 C -0.36 -19.12 10.25 84.01 0.86 -18.26 16 8 H 0.14 6.52 7.83 -2.91 -0.02 6.50 16 9 N -0.17 -9.58 3.74 -190.01 -0.71 -10.29 16 10 C -0.08 -3.90 11.49 83.37 0.96 -2.94 16 11 C -0.04 -2.11 6.90 37.73 0.26 -1.85 16 12 N -0.62 -21.59 5.47 -303.92 -1.66 -23.25 16 13 C 0.50 17.61 7.33 87.66 0.64 18.25 16 14 O -0.58 -26.51 13.05 -3.10 -0.04 -26.55 16 15 C -0.12 -2.70 4.15 -10.90 -0.05 -2.75 16 16 C -0.10 -2.22 7.16 30.88 0.22 -1.99 16 17 C -0.10 -1.76 1.11 -52.26 -0.06 -1.82 16 18 C -0.13 -2.19 7.84 30.89 0.24 -1.94 16 19 C -0.14 -1.75 8.08 31.23 0.25 -1.50 16 20 C -0.11 -1.30 7.85 30.94 0.24 -1.05 16 21 C -0.10 -1.98 7.39 30.88 0.23 -1.75 16 22 C -0.06 -3.62 10.85 85.42 0.93 -2.69 16 23 N -0.31 -19.34 10.40 -56.47 -0.59 -19.92 16 24 H 0.28 14.99 8.31 -92.70 -0.77 14.22 16 25 H 0.19 6.93 8.06 -2.91 -0.02 6.91 16 26 H 0.42 10.57 8.83 -92.71 -0.82 9.75 16 27 H 0.14 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.07 2.01 7.43 -2.39 -0.02 1.99 16 30 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 34 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 35 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.07 1.57 8.09 -2.38 -0.02 1.55 16 37 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.16 9.42 5.92 -2.91 -0.02 9.40 16 Total: -1.00 -77.39 318.99 4.74 -72.65 By element: Atomic # 1 Polarization: 34.75 SS G_CDS: 0.26 Total: 35.01 kcal Atomic # 6 Polarization: -25.47 SS G_CDS: 5.20 Total: -20.27 kcal Atomic # 7 Polarization: -99.22 SS G_CDS: -2.70 Total: -101.93 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: -0.04 Total: -26.55 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 2.03 Total: 41.08 kcal Total: -77.39 4.74 -72.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843779230.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.407 kcal (2) G-P(sol) polarization free energy of solvation -77.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds