Wall clock time and date at job start Mon Mar 30 2020 02:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31295 * 1 3 3 Si 1.86803 * 119.99628 * 2 1 4 4 H 1.48494 * 109.47248 * 274.97699 * 3 2 1 5 5 H 1.48500 * 109.47261 * 34.98183 * 3 2 1 6 6 H 1.48496 * 109.46966 * 154.98048 * 3 2 1 7 7 C 1.38989 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99724 * 174.03891 * 7 2 1 9 9 N 1.37322 * 120.00001 * 354.31114 * 7 2 1 10 10 C 1.36483 * 126.06938 * 185.49024 * 9 7 2 11 11 C 1.35688 * 107.51018 * 179.97438 * 10 9 7 12 12 N 1.40593 * 126.08299 * 180.02562 * 11 10 9 13 13 C 1.34779 * 119.99750 * 179.97438 * 12 11 10 14 14 O 1.21302 * 120.00254 * 0.02562 * 13 12 11 15 15 C 1.50702 * 119.99993 * 179.97438 * 13 12 11 16 16 H 1.09003 * 115.54390 * 34.33457 * 15 13 12 17 17 C 1.52994 * 117.50043 * 248.62713 * 15 13 12 18 18 C 1.52993 * 117.50074 * 180.02562 * 15 13 12 19 19 H 1.09002 * 117.49753 * 359.97438 * 18 15 13 20 20 C 1.52997 * 117.49983 * 214.98414 * 18 15 13 21 21 C 1.53781 * 113.61238 * 159.13915 * 20 18 15 22 22 C 1.53955 * 87.01714 * 220.04343 * 21 20 18 23 23 C 1.53775 * 113.61668 * 61.52989 * 20 18 15 24 24 C 1.40649 * 107.83026 * 359.97438 * 11 10 9 25 25 N 1.30909 * 108.39054 * 359.73858 * 24 11 10 26 26 H 0.96997 * 120.00133 * 359.97438 * 1 2 3 27 27 H 1.07998 * 126.24620 * 359.94091 * 10 9 7 28 28 H 0.96996 * 119.99769 * 359.97438 * 12 11 10 29 29 H 1.08997 * 117.49761 * 359.97438 * 17 15 13 30 30 H 1.09001 * 117.49817 * 145.02343 * 17 15 13 31 31 H 1.09003 * 112.84675 * 290.33170 * 20 18 15 32 32 H 1.08990 * 113.61796 * 334.56267 * 21 20 18 33 33 H 1.09005 * 113.61796 * 105.47234 * 21 20 18 34 34 H 1.08999 * 113.54134 * 270.81234 * 22 21 20 35 35 H 1.09010 * 113.74014 * 139.94041 * 22 21 20 36 36 H 1.08999 * 113.61282 * 254.52923 * 23 20 18 37 37 H 1.08997 * 113.61433 * 25.43096 * 23 20 18 38 38 H 1.08005 * 125.80026 * 180.02562 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 2.3891 2.1073 -1.3947 5 1 1.5009 2.6200 0.8027 6 1 3.5930 1.4122 0.5921 7 6 2.0079 -1.2037 0.0005 8 1 3.0835 -1.2061 -0.0966 9 7 1.3265 -2.3899 0.1190 10 6 1.8854 -3.6293 0.2391 11 6 0.8721 -4.5270 0.3307 12 7 1.0094 -5.9195 0.4678 13 6 -0.0864 -6.6999 0.5485 14 8 -1.1911 -6.2010 0.5025 15 6 0.0607 -8.1926 0.6949 16 1 0.9168 -8.5252 1.2819 17 6 -0.3671 -9.0640 -0.4877 18 6 -1.2209 -9.0237 0.7807 19 1 -2.1706 -8.4909 0.7318 20 6 -1.2030 -10.2585 1.6840 21 6 -2.6031 -10.7287 2.1123 22 6 -1.9989 -10.9998 3.5021 23 6 -0.9420 -9.9350 3.1645 24 6 -0.3400 -3.8165 0.2653 25 7 -0.0657 -2.5421 0.1451 26 1 -0.4850 0.8400 0.0004 27 1 2.9415 -3.8544 0.2573 28 1 1.8928 -6.3184 0.5042 29 1 -0.7554 -8.5577 -1.3714 30 1 0.2076 -9.9702 -0.6789 31 1 -0.5738 -11.0588 1.2944 32 1 -3.3504 -9.9354 2.1083 33 1 -2.9378 -11.6294 1.5975 34 1 -1.5883 -12.0037 3.6100 35 1 -2.6534 -10.7191 4.3275 36 1 0.0624 -10.1958 3.4979 37 1 -1.2344 -8.9242 3.4487 38 1 -1.3288 -4.2485 0.3115 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845345746.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:37 Heat of formation + Delta-G solvation = 86.155688 kcal Electronic energy + Delta-G solvation = -20273.935713 eV Core-core repulsion = 17119.657592 eV Total energy + Delta-G solvation = -3154.278121 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.13133 -39.40148 -38.30487 -35.58934 -34.10149 -33.08923 -30.21805 -28.00082 -26.45463 -25.72156 -25.05534 -23.53597 -21.28161 -20.85108 -19.79177 -19.44123 -19.33147 -17.54495 -16.67844 -15.81723 -15.47976 -15.31805 -14.93210 -14.43735 -14.28571 -13.69116 -13.38275 -13.02062 -12.88717 -12.61242 -12.54695 -12.21142 -11.90574 -11.66684 -11.38372 -11.24989 -10.95257 -10.92281 -10.77357 -10.62684 -10.51549 -10.13693 -9.96033 -9.84737 -9.13943 -9.10125 -8.77155 -8.02769 -6.65719 -6.53979 -4.20181 2.77219 3.01320 3.06308 3.11780 3.53738 3.65888 3.86131 3.95253 4.44975 4.45525 4.53888 4.59897 4.74392 4.80874 4.98354 5.00438 5.03503 5.11669 5.33195 5.41136 5.55196 5.63885 5.68238 5.70067 5.77992 5.83659 5.98722 6.09250 6.24715 6.27627 6.42214 6.51061 6.94794 7.00087 7.17530 7.28299 7.88958 8.23963 8.33811 8.67371 8.93894 9.41101 9.70156 10.42412 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.047900 B = 0.003068 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.405602 B = 9124.918906 C = 9224.769152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.046 3.954 3 Si 0.934 3.066 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.324 4.324 8 H 0.116 0.884 9 N -0.144 5.144 10 C -0.084 4.084 11 C -0.059 4.059 12 N -0.622 5.622 13 C 0.527 3.473 14 O -0.538 6.538 15 C -0.178 4.178 16 H 0.118 0.882 17 C -0.152 4.152 18 C -0.109 4.109 19 H 0.118 0.882 20 C -0.082 4.082 21 C -0.133 4.133 22 C -0.145 4.145 23 C -0.135 4.135 24 C -0.034 4.034 25 N -0.261 5.261 26 H 0.274 0.726 27 H 0.145 0.855 28 H 0.397 0.603 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.085 0.915 38 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.628 -18.098 3.042 18.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.171 4.171 3 Si 0.758 3.242 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.456 4.456 8 H 0.133 0.867 9 N 0.088 4.912 10 C -0.235 4.235 11 C -0.164 4.164 12 N -0.263 5.263 13 C 0.313 3.687 14 O -0.416 6.416 15 C -0.199 4.199 16 H 0.136 0.864 17 C -0.190 4.190 18 C -0.127 4.127 19 H 0.136 0.864 20 C -0.100 4.100 21 C -0.170 4.170 22 C -0.183 4.183 23 C -0.172 4.172 24 C -0.210 4.210 25 N -0.092 5.092 26 H 0.085 0.915 27 H 0.163 0.837 28 H 0.230 0.770 29 H 0.117 0.883 30 H 0.118 0.882 31 H 0.108 0.892 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.104 0.896 38 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 0.155 -16.388 2.901 16.643 hybrid contribution 1.460 -0.306 0.089 1.495 sum 1.616 -16.694 2.990 17.037 Atomic orbital electron populations 1.70225 1.06153 1.27926 1.35363 1.25641 0.95678 1.00252 0.95504 0.85828 0.79503 0.80101 0.78808 1.19686 1.20052 1.18769 1.19859 0.92100 0.80714 1.52958 0.86660 1.44539 1.03995 1.03670 1.38956 1.21264 0.96813 0.85814 1.19594 1.17303 0.94279 0.81803 1.23052 1.42452 1.08238 1.05017 1.70616 1.19432 0.84358 0.86960 0.77960 1.90579 1.25777 1.74641 1.50563 1.22174 1.01358 0.91059 1.05327 0.86393 1.23049 1.02916 1.00500 0.92502 1.22361 0.95333 0.97085 0.97961 0.86357 1.22171 0.97914 0.95711 0.94206 1.22977 0.96406 1.01300 0.96362 1.22853 0.98775 0.99131 0.97500 1.22927 0.99042 0.99739 0.95518 1.24104 0.98015 0.90884 1.07953 1.78240 0.90293 1.15092 1.25606 0.91506 0.83728 0.77028 0.88295 0.88197 0.89224 0.89771 0.91612 0.90473 0.91506 0.91694 0.89637 0.80783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.83 11.83 55.50 0.66 -21.17 16 2 C 0.05 1.21 5.50 -17.50 -0.10 1.12 16 3 Si 0.93 19.13 29.56 -169.99 -5.02 14.11 16 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 6 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 7 C -0.32 -8.71 10.24 -14.81 -0.15 -8.86 16 8 H 0.12 2.76 7.84 -52.49 -0.41 2.35 16 9 N -0.14 -4.02 3.74 -11.41 -0.04 -4.07 16 10 C -0.08 -2.02 11.49 -16.39 -0.19 -2.21 16 11 C -0.06 -1.39 6.90 -83.84 -0.58 -1.97 16 12 N -0.62 -11.41 5.47 -10.00 -0.05 -11.47 16 13 C 0.53 9.46 7.58 -10.98 -0.08 9.38 16 14 O -0.54 -11.83 13.41 5.54 0.07 -11.76 16 15 C -0.18 -2.25 5.74 -91.78 -0.53 -2.77 16 16 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 17 C -0.15 -1.66 9.92 -26.76 -0.27 -1.93 16 18 C -0.11 -1.27 5.04 -90.65 -0.46 -1.72 16 19 H 0.12 1.64 7.50 -51.93 -0.39 1.25 16 20 C -0.08 -0.75 3.87 -89.81 -0.35 -1.10 16 21 C -0.13 -1.15 7.65 -25.83 -0.20 -1.35 16 22 C -0.15 -1.18 8.09 -25.83 -0.21 -1.39 16 23 C -0.13 -1.26 7.49 -25.92 -0.19 -1.45 16 24 C -0.03 -0.92 10.85 -17.04 -0.18 -1.11 16 25 N -0.26 -7.76 10.42 30.80 0.32 -7.44 16 26 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 27 H 0.15 2.90 8.06 -52.49 -0.42 2.47 16 28 H 0.40 5.65 8.83 -40.82 -0.36 5.29 16 29 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.10 0.84 8.13 -51.93 -0.42 0.42 16 31 H 0.09 0.72 8.07 -51.93 -0.42 0.30 16 32 H 0.08 0.79 7.98 -51.93 -0.41 0.37 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.09 0.93 8.10 -51.93 -0.42 0.51 16 38 H 0.18 4.69 5.92 -52.48 -0.31 4.38 16 LS Contribution 323.67 15.07 4.88 4.88 Total: -1.00 -33.27 323.67 -7.91 -41.18 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -5.24 Total: 11.10 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: -3.48 Total: -15.36 kcal Atomic # 7 Polarization: -45.03 SS G_CDS: 0.88 Total: -44.15 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.07 Total: -11.76 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.02 Total: 14.11 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.27 -7.91 -41.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845345746.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.338 kcal (2) G-P(sol) polarization free energy of solvation -33.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds