Wall clock time and date at job start Mon Mar 30 2020 02:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31295 * 1 3 3 Si 1.86803 * 119.99628 * 2 1 4 4 H 1.48494 * 109.47248 * 274.97699 * 3 2 1 5 5 H 1.48500 * 109.47261 * 34.98183 * 3 2 1 6 6 H 1.48496 * 109.46966 * 154.98048 * 3 2 1 7 7 C 1.38989 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99724 * 174.03891 * 7 2 1 9 9 N 1.37322 * 120.00001 * 354.31114 * 7 2 1 10 10 C 1.36483 * 126.06938 * 185.49024 * 9 7 2 11 11 C 1.35688 * 107.51018 * 179.97438 * 10 9 7 12 12 N 1.40593 * 126.08299 * 180.02562 * 11 10 9 13 13 C 1.34779 * 119.99750 * 179.97438 * 12 11 10 14 14 O 1.21302 * 120.00254 * 0.02562 * 13 12 11 15 15 C 1.50702 * 119.99993 * 179.97438 * 13 12 11 16 16 H 1.09003 * 115.54390 * 34.33457 * 15 13 12 17 17 C 1.52994 * 117.50043 * 248.62713 * 15 13 12 18 18 C 1.52993 * 117.50074 * 180.02562 * 15 13 12 19 19 H 1.09002 * 117.49753 * 359.97438 * 18 15 13 20 20 C 1.52997 * 117.49983 * 214.98414 * 18 15 13 21 21 C 1.53781 * 113.61238 * 159.13915 * 20 18 15 22 22 C 1.53955 * 87.01714 * 220.04343 * 21 20 18 23 23 C 1.53775 * 113.61668 * 61.52989 * 20 18 15 24 24 C 1.40649 * 107.83026 * 359.97438 * 11 10 9 25 25 N 1.30909 * 108.39054 * 359.73858 * 24 11 10 26 26 H 0.96997 * 120.00133 * 359.97438 * 1 2 3 27 27 H 1.07998 * 126.24620 * 359.94091 * 10 9 7 28 28 H 0.96996 * 119.99769 * 359.97438 * 12 11 10 29 29 H 1.08997 * 117.49761 * 359.97438 * 17 15 13 30 30 H 1.09001 * 117.49817 * 145.02343 * 17 15 13 31 31 H 1.09003 * 112.84675 * 290.33170 * 20 18 15 32 32 H 1.08990 * 113.61796 * 334.56267 * 21 20 18 33 33 H 1.09005 * 113.61796 * 105.47234 * 21 20 18 34 34 H 1.08999 * 113.54134 * 270.81234 * 22 21 20 35 35 H 1.09010 * 113.74014 * 139.94041 * 22 21 20 36 36 H 1.08999 * 113.61282 * 254.52923 * 23 20 18 37 37 H 1.08997 * 113.61433 * 25.43096 * 23 20 18 38 38 H 1.08005 * 125.80026 * 180.02562 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 2.3891 2.1073 -1.3947 5 1 1.5009 2.6200 0.8027 6 1 3.5930 1.4122 0.5921 7 6 2.0079 -1.2037 0.0005 8 1 3.0835 -1.2061 -0.0966 9 7 1.3265 -2.3899 0.1190 10 6 1.8854 -3.6293 0.2391 11 6 0.8721 -4.5270 0.3307 12 7 1.0094 -5.9195 0.4678 13 6 -0.0864 -6.6999 0.5485 14 8 -1.1911 -6.2010 0.5025 15 6 0.0607 -8.1926 0.6949 16 1 0.9168 -8.5252 1.2819 17 6 -0.3671 -9.0640 -0.4877 18 6 -1.2209 -9.0237 0.7807 19 1 -2.1706 -8.4909 0.7318 20 6 -1.2030 -10.2585 1.6840 21 6 -2.6031 -10.7287 2.1123 22 6 -1.9989 -10.9998 3.5021 23 6 -0.9420 -9.9350 3.1645 24 6 -0.3400 -3.8165 0.2653 25 7 -0.0657 -2.5421 0.1451 26 1 -0.4850 0.8400 0.0004 27 1 2.9415 -3.8544 0.2573 28 1 1.8928 -6.3184 0.5042 29 1 -0.7554 -8.5577 -1.3714 30 1 0.2076 -9.9702 -0.6789 31 1 -0.5738 -11.0588 1.2944 32 1 -3.3504 -9.9354 2.1083 33 1 -2.9378 -11.6294 1.5975 34 1 -1.5883 -12.0037 3.6100 35 1 -2.6534 -10.7191 4.3275 36 1 0.0624 -10.1958 3.4979 37 1 -1.2344 -8.9242 3.4487 38 1 -1.3288 -4.2485 0.3115 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845345746.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:37 Heat of formation + Delta-G solvation = 65.181891 kcal Electronic energy + Delta-G solvation = -20274.845205 eV Core-core repulsion = 17119.657592 eV Total energy + Delta-G solvation = -3155.187613 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.76536 -40.78253 -39.51836 -36.64159 -35.84322 -34.94465 -32.25985 -29.84079 -27.52334 -26.73012 -26.41998 -24.86966 -22.87526 -22.12371 -21.33068 -21.00361 -20.21731 -19.33435 -18.07534 -17.42733 -17.00462 -16.36717 -16.21526 -15.91025 -15.75382 -15.23388 -15.02441 -14.80353 -14.19380 -13.53624 -13.37819 -13.35870 -13.28408 -13.18398 -12.93491 -12.83723 -12.66056 -12.08380 -11.87967 -11.81746 -11.50429 -11.33715 -11.02252 -10.86973 -10.82614 -10.73927 -10.55335 -10.11662 -8.53551 -8.48440 -6.25434 1.19094 1.39305 1.47983 1.58049 1.83468 2.04437 2.28802 2.44934 2.88680 2.93353 3.07397 3.63976 3.72984 3.81350 3.97565 4.01602 4.17487 4.22672 4.32876 4.42569 4.56493 4.60389 4.84501 4.91732 4.92667 4.95199 4.99595 5.04703 5.13155 5.15401 5.15474 5.28364 5.31681 5.42492 5.49076 5.71412 5.95164 6.30616 6.72472 6.78591 7.41787 7.47104 7.66969 8.51418 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.047900 B = 0.003068 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.405602 B = 9124.918906 C = 9224.769152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C -0.008 4.008 3 Si 1.021 2.979 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.243 1.243 7 C -0.355 4.355 8 H 0.142 0.858 9 N -0.168 5.168 10 C -0.081 4.081 11 C -0.045 4.045 12 N -0.614 5.614 13 C 0.521 3.479 14 O -0.585 6.585 15 C -0.179 4.179 16 H 0.153 0.847 17 C -0.133 4.133 18 C -0.112 4.112 19 H 0.086 0.914 20 C -0.073 4.073 21 C -0.138 4.138 22 C -0.139 4.139 23 C -0.140 4.140 24 C -0.063 4.063 25 N -0.311 5.311 26 H 0.276 0.724 27 H 0.189 0.811 28 H 0.420 0.580 29 H 0.081 0.919 30 H 0.140 0.860 31 H 0.116 0.884 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.063 0.937 36 H 0.079 0.921 37 H 0.060 0.940 38 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.575 -20.245 3.220 21.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.219 4.219 3 Si 0.839 3.161 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.165 1.165 7 C -0.486 4.486 8 H 0.159 0.841 9 N 0.063 4.937 10 C -0.231 4.231 11 C -0.151 4.151 12 N -0.258 5.258 13 C 0.310 3.690 14 O -0.465 6.465 15 C -0.200 4.200 16 H 0.171 0.829 17 C -0.170 4.170 18 C -0.131 4.131 19 H 0.104 0.896 20 C -0.091 4.091 21 C -0.175 4.175 22 C -0.176 4.176 23 C -0.177 4.177 24 C -0.238 4.238 25 N -0.144 5.144 26 H 0.086 0.914 27 H 0.206 0.794 28 H 0.257 0.743 29 H 0.100 0.900 30 H 0.158 0.842 31 H 0.134 0.866 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.115 0.885 35 H 0.081 0.919 36 H 0.098 0.902 37 H 0.078 0.922 38 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 3.138 -18.600 3.081 19.113 hybrid contribution 0.479 0.226 0.030 0.531 sum 3.617 -18.374 3.112 18.983 Atomic orbital electron populations 1.70410 1.08534 1.29123 1.37280 1.26925 0.96461 1.04446 0.94084 0.84564 0.78486 0.74007 0.79039 1.18899 1.20221 1.16549 1.20641 0.93437 0.80998 1.53505 0.84073 1.44855 1.03547 1.05237 1.40092 1.22012 0.98813 0.84554 1.17723 1.17400 0.92771 0.84331 1.20638 1.42437 1.09925 1.02830 1.70606 1.20493 0.83333 0.89232 0.75947 1.90569 1.27712 1.76059 1.52171 1.22150 1.03243 0.86943 1.07635 0.82944 1.23183 1.01967 1.00808 0.91064 1.22363 0.93595 0.97654 0.99458 0.89624 1.22228 0.98550 0.94951 0.93385 1.22988 0.96016 1.01356 0.97181 1.22862 0.98161 0.99693 0.96896 1.22914 1.00164 0.98827 0.95843 1.24126 0.98980 0.91163 1.09529 1.78135 0.92275 1.16496 1.27448 0.91397 0.79356 0.74251 0.90027 0.84230 0.86559 0.91559 0.90171 0.88509 0.91853 0.90246 0.92166 0.81911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -48.61 11.83 21.66 0.26 -48.35 16 2 C -0.01 -0.41 5.50 84.95 0.47 0.06 16 3 Si 1.02 39.05 29.56 68.60 2.03 41.08 16 4 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 5 H -0.28 -10.54 7.11 99.48 0.71 -9.83 16 6 H -0.24 -8.37 7.11 99.48 0.71 -7.66 16 7 C -0.35 -19.10 10.24 84.01 0.86 -18.24 16 8 H 0.14 6.55 7.84 -2.91 -0.02 6.53 16 9 N -0.17 -9.57 3.74 -190.02 -0.71 -10.28 16 10 C -0.08 -3.83 11.49 83.38 0.96 -2.87 16 11 C -0.05 -2.15 6.90 37.73 0.26 -1.89 16 12 N -0.61 -21.85 5.47 -303.92 -1.66 -23.51 16 13 C 0.52 18.63 7.58 87.66 0.66 19.30 16 14 O -0.58 -26.89 13.41 -3.10 -0.04 -26.93 16 15 C -0.18 -4.13 5.74 -11.54 -0.07 -4.20 16 16 H 0.15 2.51 8.14 -2.39 -0.02 2.49 16 17 C -0.13 -2.54 9.92 30.58 0.30 -2.24 16 18 C -0.11 -2.47 5.04 -10.81 -0.05 -2.52 16 19 H 0.09 2.48 7.50 -2.39 -0.02 2.46 16 20 C -0.07 -1.15 3.87 -10.27 -0.04 -1.19 16 21 C -0.14 -2.18 7.65 31.18 0.24 -1.95 16 22 C -0.14 -1.96 8.09 31.18 0.25 -1.71 16 23 C -0.14 -2.33 7.49 31.12 0.23 -2.10 16 24 C -0.06 -3.58 10.85 85.42 0.93 -2.65 16 25 N -0.31 -19.38 10.42 -56.46 -0.59 -19.96 16 26 H 0.28 14.93 8.31 -92.71 -0.77 14.16 16 27 H 0.19 6.98 8.06 -2.91 -0.02 6.95 16 28 H 0.42 10.81 8.83 -92.71 -0.82 9.99 16 29 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.14 1.63 8.13 -2.39 -0.02 1.61 16 31 H 0.12 1.30 8.07 -2.39 -0.02 1.28 16 32 H 0.07 1.27 7.98 -2.39 -0.02 1.25 16 33 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 34 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 36 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.06 1.30 8.10 -2.39 -0.02 1.28 16 38 H 0.16 9.44 5.92 -2.91 -0.02 9.43 16 Total: -1.00 -77.89 323.67 4.54 -73.35 By element: Atomic # 1 Polarization: 36.54 SS G_CDS: 0.26 Total: 36.80 kcal Atomic # 6 Polarization: -27.19 SS G_CDS: 5.00 Total: -22.19 kcal Atomic # 7 Polarization: -99.41 SS G_CDS: -2.70 Total: -102.11 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -0.04 Total: -26.93 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 2.03 Total: 41.08 kcal Total: -77.89 4.54 -73.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845345746.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.529 kcal (2) G-P(sol) polarization free energy of solvation -77.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds