Wall clock time and date at job start Mon Mar 30 2020 01:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72240 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72088 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72124 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.28126 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.27650 * 7 2 1 10 10 N 1.46500 * 109.46944 * 180.02562 * 9 7 2 11 11 C 1.37488 * 120.00214 * 179.97438 * 10 9 7 12 12 N 1.30344 * 119.99636 * 0.02562 * 11 10 9 13 13 N 1.37480 * 119.99877 * 180.02562 * 11 10 9 14 14 C 1.46507 * 119.99565 * 180.02562 * 13 11 10 15 15 H 1.08993 * 109.43665 * 325.08343 * 14 13 11 16 16 C 1.53069 * 109.43221 * 205.21218 * 14 13 11 17 17 C 1.53409 * 108.30713 * 191.75675 * 16 14 13 18 18 O 1.42825 * 108.36910 * 64.71118 * 17 16 14 19 19 C 1.35841 * 117.85230 * 310.76738 * 18 17 16 20 20 C 1.39143 * 118.49566 * 197.03594 * 19 18 17 21 21 C 1.37970 * 120.21621 * 180.42798 * 20 19 18 22 22 C 1.38302 * 119.95223 * 359.97438 * 21 20 19 23 23 C 1.38098 * 119.98418 * 359.92147 * 22 21 20 24 24 C 1.38368 * 121.80290 * 17.30841 * 19 18 17 25 25 H 0.97001 * 120.00651 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47319 * 299.99477 * 9 7 2 27 27 H 1.08999 * 109.47742 * 60.00602 * 9 7 2 28 28 H 0.97004 * 120.00364 * 0.02562 * 10 9 7 29 29 H 0.97002 * 119.99746 * 180.02562 * 12 11 10 30 30 H 0.96996 * 120.00322 * 359.97438 * 13 11 10 31 31 H 1.08997 * 109.70408 * 311.46389 * 16 14 13 32 32 H 1.09000 * 109.69599 * 72.06010 * 16 14 13 33 33 H 1.09002 * 109.68218 * 304.98985 * 17 16 14 34 34 H 1.09004 * 109.68202 * 184.43043 * 17 16 14 35 35 H 1.08008 * 119.89701 * 0.40478 * 20 19 18 36 36 H 1.07996 * 120.02736 * 179.97438 * 21 20 19 37 37 H 1.08003 * 120.00350 * 179.97438 * 22 21 20 38 38 H 1.08000 * 119.83886 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5027 2.0428 -1.4001 5 1 1.4439 2.6543 0.6941 6 1 3.5439 1.4417 0.7059 7 6 2.0045 -1.1941 0.0058 8 1 3.0845 -1.1942 0.0104 9 6 1.2508 -2.4991 0.0058 10 7 2.2027 -3.6127 0.0131 11 6 1.7444 -4.9089 0.0149 12 7 0.4629 -5.1470 0.0097 13 7 2.6377 -5.9539 0.0223 14 6 2.1493 -7.3351 0.0237 15 1 1.2308 -7.3944 0.6076 16 6 3.2076 -8.2490 0.6465 17 6 2.8094 -9.7047 0.3715 18 8 2.8575 -9.9259 -1.0386 19 6 2.2308 -9.0289 -1.8435 20 6 1.9528 -9.3959 -3.1566 21 6 1.3255 -8.5093 -4.0074 22 6 0.9707 -7.2515 -3.5549 23 6 1.2432 -6.8847 -2.2517 24 6 1.8722 -7.7708 -1.3928 25 1 -0.4851 -0.8400 -0.0004 26 1 0.6205 -2.5547 0.8933 27 1 0.6280 -2.5591 -0.8867 28 1 3.1565 -3.4356 0.0173 29 1 0.1395 -6.0615 0.0114 30 1 3.5914 -5.7767 0.0258 31 1 4.1800 -8.0433 0.1989 32 1 3.2540 -8.0777 1.7219 33 1 1.7982 -9.8840 0.7370 34 1 3.5060 -10.3768 0.8727 35 1 2.2294 -10.3780 -3.5111 36 1 1.1115 -8.7973 -5.0260 37 1 0.4800 -6.5567 -4.2203 38 1 0.9648 -5.9020 -1.9006 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849023350.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:36 Heat of formation + Delta-G solvation = 1.366429 kcal Electronic energy + Delta-G solvation = -20931.786613 eV Core-core repulsion = 17773.831754 eV Total energy + Delta-G solvation = -3157.954859 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.96047 -39.56598 -38.45417 -36.81669 -35.06335 -33.09512 -31.94345 -31.56116 -30.89583 -28.51697 -26.18563 -24.78870 -24.50868 -23.37931 -21.45721 -21.05442 -19.76699 -18.82723 -18.35257 -17.68094 -17.48576 -16.99662 -16.08952 -15.72761 -15.64641 -15.53773 -15.25196 -15.08457 -14.77662 -14.50579 -14.18682 -14.07936 -13.57892 -13.10610 -13.01312 -12.95664 -12.55111 -12.46667 -12.14379 -11.88821 -11.80689 -11.64526 -10.84327 -10.66316 -10.26781 -9.92006 -9.63965 -9.21840 -8.92833 -8.73690 -6.47214 0.23696 0.38422 1.56049 1.65847 1.81992 1.86322 2.11896 2.30114 2.57674 2.74429 3.14223 3.17396 3.48170 3.54938 3.69221 3.96598 4.04514 4.14763 4.29331 4.44993 4.46023 4.52703 4.61483 4.77745 4.86598 4.88473 4.97161 5.01064 5.19155 5.25333 5.38742 5.51618 5.59035 5.60621 5.76367 5.99617 6.23230 6.40515 6.44647 6.54333 7.15353 7.36101 7.97969 8.66376 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.028469 B = 0.003862 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.299159 B = 7249.110629 C = 7800.307616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.031 4.031 3 Si 1.130 2.870 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.264 1.264 7 C -0.631 4.631 8 H 0.068 0.932 9 C 0.293 3.707 10 N -0.709 5.709 11 C 0.633 3.367 12 N -0.865 5.865 13 N -0.754 5.754 14 C 0.202 3.798 15 H 0.078 0.922 16 C -0.154 4.154 17 C 0.062 3.938 18 O -0.322 6.322 19 C 0.132 3.868 20 C -0.160 4.160 21 C -0.077 4.077 22 C -0.170 4.170 23 C -0.099 4.099 24 C -0.191 4.191 25 H 0.256 0.744 26 H -0.019 1.019 27 H -0.021 1.021 28 H 0.404 0.596 29 H 0.333 0.667 30 H 0.400 0.600 31 H 0.088 0.912 32 H 0.111 0.889 33 H 0.073 0.927 34 H 0.146 0.854 35 H 0.152 0.848 36 H 0.157 0.843 37 H 0.124 0.876 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.490 -21.962 -2.204 24.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.230 4.230 3 Si 0.950 3.050 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.188 1.188 7 C -0.669 4.669 8 H 0.086 0.914 9 C 0.169 3.831 10 N -0.350 5.350 11 C 0.267 3.733 12 N -0.518 5.518 13 N -0.399 5.399 14 C 0.096 3.904 15 H 0.096 0.904 16 C -0.192 4.192 17 C -0.013 4.013 18 O -0.236 6.236 19 C 0.086 3.914 20 C -0.178 4.178 21 C -0.095 4.095 22 C -0.188 4.188 23 C -0.118 4.118 24 C -0.194 4.194 25 H 0.065 0.935 26 H -0.002 1.002 27 H -0.003 1.003 28 H 0.240 0.760 29 H 0.151 0.849 30 H 0.235 0.765 31 H 0.106 0.894 32 H 0.129 0.871 33 H 0.092 0.908 34 H 0.164 0.836 35 H 0.169 0.831 36 H 0.175 0.825 37 H 0.142 0.858 38 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 8.352 -19.892 -2.220 21.688 hybrid contribution 0.626 -1.998 0.078 2.095 sum 8.978 -21.890 -2.141 23.757 Atomic orbital electron populations 1.70850 1.08155 1.30084 1.47621 1.27528 0.96391 1.06850 0.92224 0.82783 0.74108 0.70306 0.77797 1.19787 1.20988 1.18799 1.22514 0.95329 0.92364 1.56701 0.91384 1.18318 0.88177 0.83531 0.93099 1.44074 1.09202 1.01045 1.80723 1.19006 0.85935 0.81915 0.86437 1.69916 1.09534 1.28212 1.44185 1.45367 1.08508 1.02858 1.83199 1.19549 0.98699 0.80731 0.91406 0.90400 1.22447 0.98412 0.94652 1.03659 1.23257 1.04090 0.96113 0.77806 1.85978 1.70721 1.47731 1.19217 1.18821 0.93280 0.87679 0.91585 1.20898 1.03339 1.01996 0.91585 1.21271 0.95594 0.92164 1.00496 1.21276 1.03449 0.98217 0.95847 1.21480 0.96245 0.99570 0.94485 1.20421 1.06130 0.94498 0.98335 0.93486 1.00153 1.00301 0.76018 0.84928 0.76489 0.89383 0.87082 0.90847 0.83605 0.83069 0.82498 0.85789 0.87015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.52 13.65 21.45 0.29 -58.23 16 2 C -0.03 -1.80 5.46 84.66 0.46 -1.34 16 3 Si 1.13 49.18 29.90 68.60 2.05 51.24 16 4 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 7 C -0.63 -35.51 9.28 25.60 0.24 -35.27 16 8 H 0.07 3.56 7.60 -2.91 -0.02 3.54 16 9 C 0.29 16.15 4.73 85.63 0.41 16.56 16 10 N -0.71 -30.84 5.66 -353.15 -2.00 -32.84 16 11 C 0.63 24.66 7.28 260.53 1.90 26.56 16 12 N -0.87 -37.38 11.67 -58.53 -0.68 -38.06 16 13 N -0.75 -21.24 4.96 -332.17 -1.65 -22.89 16 14 C 0.20 4.87 2.48 44.29 0.11 4.98 16 15 H 0.08 2.04 6.68 -2.39 -0.02 2.02 16 16 C -0.15 -2.36 5.67 30.75 0.17 -2.18 16 17 C 0.06 0.82 7.03 72.12 0.51 1.33 16 18 O -0.32 -6.40 10.27 -91.77 -0.94 -7.34 16 19 C 0.13 3.14 6.47 22.52 0.15 3.28 16 20 C -0.16 -3.41 9.94 22.42 0.22 -3.19 16 21 C -0.08 -1.66 10.04 22.22 0.22 -1.44 16 22 C -0.17 -4.63 10.04 22.25 0.22 -4.41 16 23 C -0.10 -3.13 8.68 22.30 0.19 -2.93 16 24 C -0.19 -5.14 5.55 -19.75 -0.11 -5.25 16 25 H 0.26 16.69 7.22 -92.71 -0.67 16.02 16 26 H -0.02 -1.19 8.00 -2.39 -0.02 -1.21 16 27 H -0.02 -1.28 8.01 -2.39 -0.02 -1.30 16 28 H 0.40 15.40 8.42 -92.71 -0.78 14.62 16 29 H 0.33 12.96 5.97 -92.71 -0.55 12.41 16 30 H 0.40 9.49 8.68 -92.71 -0.80 8.69 16 31 H 0.09 1.32 8.11 -2.39 -0.02 1.30 16 32 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.15 0.97 8.14 -2.38 -0.02 0.95 16 35 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 36 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 37 H 0.12 3.22 8.06 -2.91 -0.02 3.19 16 38 H 0.11 4.27 4.56 -2.91 -0.01 4.26 16 Total: -1.00 -72.57 311.92 0.84 -71.73 By element: Atomic # 1 Polarization: 40.61 SS G_CDS: -0.92 Total: 39.69 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: 4.69 Total: -3.30 kcal Atomic # 7 Polarization: -147.98 SS G_CDS: -4.04 Total: -152.01 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: -0.94 Total: -7.34 kcal Atomic # 14 Polarization: 49.18 SS G_CDS: 2.05 Total: 51.24 kcal Total: -72.57 0.84 -71.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849023350.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.099 kcal (2) G-P(sol) polarization free energy of solvation -72.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds