Wall clock time and date at job start Mon Mar 30 2020 01:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 N 1.46499 * 109.47260 * 180.27562 * 9 7 2 11 11 C 1.37480 * 120.00460 * 180.02562 * 10 9 7 12 12 N 1.30345 * 119.99876 * 0.02562 * 11 10 9 13 13 N 1.37481 * 120.00671 * 180.02562 * 11 10 9 14 14 C 1.46497 * 120.00701 * 180.02562 * 13 11 10 15 15 H 1.09000 * 109.43286 * 35.00090 * 14 13 11 16 16 C 1.53070 * 109.43773 * 154.91608 * 14 13 11 17 17 C 1.53411 * 108.29079 * 168.25553 * 16 14 13 18 18 O 1.42835 * 108.37245 * 295.25370 * 17 16 14 19 19 C 1.35844 * 117.85992 * 49.14769 * 18 17 16 20 20 C 1.39149 * 118.50241 * 162.98149 * 19 18 17 21 21 C 1.37968 * 120.21998 * 179.81838 * 20 19 18 22 22 C 1.38289 * 119.95862 * 359.97438 * 21 20 19 23 23 C 1.38105 * 119.98208 * 0.07853 * 22 21 20 24 24 C 1.38319 * 121.79259 * 342.88826 * 19 18 17 25 25 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 27 27 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 28 28 H 0.97002 * 119.99779 * 0.02562 * 10 9 7 29 29 H 0.97001 * 120.00465 * 179.97438 * 12 11 10 30 30 H 0.97002 * 119.99567 * 0.02562 * 13 11 10 31 31 H 1.08999 * 109.69797 * 287.95131 * 16 14 13 32 32 H 1.08993 * 109.70137 * 48.55895 * 16 14 13 33 33 H 1.09006 * 109.68431 * 54.96949 * 17 16 14 34 34 H 1.08997 * 109.68619 * 175.53224 * 17 16 14 35 35 H 1.08003 * 119.88450 * 359.84100 * 20 19 18 36 36 H 1.07993 * 120.01834 * 180.02562 * 21 20 19 37 37 H 1.08000 * 120.00820 * 180.02562 * 22 21 20 38 38 H 1.08003 * 119.84253 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 7 2.2032 -3.6125 0.0102 11 6 1.7450 -4.9088 0.0155 12 7 0.4635 -5.1470 0.0157 13 7 2.6384 -5.9537 0.0205 14 6 2.1502 -7.3350 0.0256 15 1 1.2361 -7.3987 -0.5646 16 6 3.2137 -8.2533 -0.5816 17 6 2.8128 -9.7069 -0.2989 18 8 2.8502 -9.9177 1.1133 19 6 2.2192 -9.0137 1.9070 20 6 1.9312 -9.3704 3.2208 21 6 1.2947 -8.4783 4.0590 22 6 0.9416 -7.2249 3.5935 23 6 1.2249 -6.8677 2.2898 24 6 1.8628 -7.7602 1.4432 25 1 -0.4850 0.8400 0.0004 26 1 0.6245 -2.5529 0.8956 27 1 0.6244 -2.5609 -0.8844 28 1 3.1568 -3.4352 0.0096 29 1 0.1402 -6.0616 0.0191 30 1 3.5921 -5.7764 0.0207 31 1 3.2688 -8.0901 -1.6579 32 1 4.1822 -8.0444 -0.1276 33 1 1.8043 -9.8886 -0.6706 34 1 3.5129 -10.3829 -0.7897 35 1 2.2072 -10.3487 3.5856 36 1 1.0731 -8.7584 5.0781 37 1 0.4437 -6.5257 4.2490 38 1 0.9477 -5.8884 1.9285 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849023351.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:40 Heat of formation + Delta-G solvation = 26.483572 kcal Electronic energy + Delta-G solvation = -20893.615980 eV Core-core repulsion = 17736.750282 eV Total energy + Delta-G solvation = -3156.865698 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.95746 -38.12499 -37.45024 -35.12504 -33.02576 -31.54043 -30.64302 -30.54895 -29.68153 -26.97723 -25.11321 -23.78410 -22.61676 -22.04684 -20.24792 -19.58654 -18.17050 -17.50107 -16.80202 -16.41039 -15.96993 -15.75117 -15.02726 -14.63578 -14.39298 -14.17484 -13.78982 -13.61816 -13.30845 -13.14925 -12.86895 -12.53471 -12.05187 -11.88684 -11.66185 -11.44258 -11.11176 -10.96133 -10.87188 -10.66718 -10.60971 -10.16614 -9.27305 -8.85738 -8.63321 -8.56104 -8.20399 -8.04096 -7.07845 -6.07851 -4.13425 1.28036 1.45057 3.09109 3.28397 3.30515 3.35299 3.38779 3.75294 3.83374 4.35132 4.38501 4.49446 4.59307 4.73195 4.85211 5.02724 5.06412 5.19557 5.24549 5.28060 5.42446 5.43145 5.52514 5.69506 5.76493 6.04610 6.29769 6.43648 6.53941 6.64411 6.77295 6.91897 7.25405 7.34963 7.62363 7.76339 7.94741 8.10143 8.29881 8.84935 8.92448 9.48961 9.64771 11.02090 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.028465 B = 0.003849 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.430777 B = 7272.696972 C = 7826.826048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.900 3.100 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.542 4.542 8 H 0.059 0.941 9 C 0.280 3.720 10 N -0.713 5.713 11 C 0.630 3.370 12 N -0.829 5.829 13 N -0.773 5.773 14 C 0.206 3.794 15 H 0.089 0.911 16 C -0.163 4.163 17 C 0.067 3.933 18 O -0.319 6.319 19 C 0.134 3.866 20 C -0.159 4.159 21 C -0.085 4.085 22 C -0.154 4.154 23 C -0.072 4.072 24 C -0.182 4.182 25 H 0.264 0.736 26 H 0.024 0.976 27 H 0.024 0.976 28 H 0.390 0.610 29 H 0.323 0.677 30 H 0.387 0.613 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.111 0.889 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.124 0.876 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.561 -19.878 2.317 21.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.728 3.272 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.581 4.581 8 H 0.077 0.923 9 C 0.159 3.841 10 N -0.352 5.352 11 C 0.264 3.736 12 N -0.481 5.481 13 N -0.419 5.419 14 C 0.099 3.901 15 H 0.106 0.894 16 C -0.201 4.201 17 C -0.009 4.009 18 O -0.233 6.233 19 C 0.088 3.912 20 C -0.178 4.178 21 C -0.104 4.104 22 C -0.172 4.172 23 C -0.091 4.091 24 C -0.185 4.185 25 H 0.074 0.926 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.223 0.777 29 H 0.140 0.860 30 H 0.220 0.780 31 H 0.110 0.890 32 H 0.101 0.899 33 H 0.085 0.915 34 H 0.129 0.871 35 H 0.144 0.856 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 5.410 -19.240 2.339 20.123 hybrid contribution 1.606 0.313 -0.096 1.639 sum 7.016 -18.927 2.243 20.310 Atomic orbital electron populations 1.69982 1.05985 1.27029 1.49228 1.24902 0.94861 0.99178 0.94969 0.86478 0.79642 0.83002 0.78112 1.20587 1.21072 1.19890 1.21298 0.93197 0.90849 1.52740 0.92281 1.18876 0.87370 0.80230 0.97623 1.44708 1.09576 1.01305 1.79602 1.19244 0.85297 0.81896 0.87176 1.70026 1.07849 1.26842 1.43428 1.45600 1.08598 1.03098 1.84568 1.19307 0.97611 0.81639 0.91547 0.89362 1.22455 0.99742 0.95063 1.02881 1.22932 1.02563 0.96244 0.79167 1.85970 1.71233 1.48074 1.18027 1.18677 0.93630 0.87906 0.90940 1.20507 1.04181 1.01023 0.92067 1.20953 0.96883 0.93421 0.99100 1.21134 1.02803 0.96949 0.96295 1.21705 0.93956 1.00297 0.93099 1.20420 1.05730 0.94076 0.98245 0.92616 0.95796 0.95791 0.77681 0.86028 0.77971 0.89022 0.89853 0.91479 0.87135 0.85554 0.85654 0.85845 0.83561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.25 13.29 55.43 0.74 -25.51 16 2 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 3 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.54 -14.85 9.28 -34.44 -0.32 -15.17 16 8 H 0.06 1.53 7.60 -52.49 -0.40 1.13 16 9 C 0.28 7.41 5.42 -5.19 -0.03 7.38 16 10 N -0.71 -14.97 5.66 -62.97 -0.36 -15.32 16 11 C 0.63 11.91 7.28 -320.09 -2.33 9.58 16 12 N -0.83 -17.19 11.66 30.15 0.35 -16.84 16 13 N -0.77 -11.00 4.96 -56.35 -0.28 -11.28 16 14 C 0.21 2.57 2.48 -69.01 -0.17 2.40 16 15 H 0.09 1.17 6.68 -51.93 -0.35 0.82 16 16 C -0.16 -1.48 5.67 -26.48 -0.15 -1.63 16 17 C 0.07 0.56 7.03 37.37 0.26 0.82 16 18 O -0.32 -3.66 10.27 -19.25 -0.20 -3.86 16 19 C 0.13 1.73 6.47 -39.21 -0.25 1.47 16 20 C -0.16 -1.91 9.94 -39.34 -0.39 -2.30 16 21 C -0.09 -1.00 10.04 -39.66 -0.40 -1.40 16 22 C -0.15 -2.09 10.04 -39.61 -0.40 -2.49 16 23 C -0.07 -1.11 8.67 -39.51 -0.34 -1.45 16 24 C -0.18 -2.50 5.55 -104.44 -0.58 -3.08 16 25 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 26 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.39 7.28 8.42 -40.82 -0.34 6.93 16 29 H 0.32 6.02 5.96 -40.82 -0.24 5.77 16 30 H 0.39 4.80 8.67 -40.82 -0.35 4.45 16 31 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 0.76 8.11 -51.93 -0.42 0.34 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.13 1.27 8.06 -52.48 -0.42 0.84 16 36 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 38 H 0.15 2.64 4.54 -52.48 -0.24 2.40 16 LS Contribution 313.19 15.07 4.72 4.72 Total: -1.00 -31.58 313.19 -10.11 -41.68 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -4.86 Total: 14.51 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: -5.20 Total: -4.17 kcal Atomic # 7 Polarization: -69.40 SS G_CDS: 0.45 Total: -68.95 kcal Atomic # 8 Polarization: -3.66 SS G_CDS: -0.20 Total: -3.86 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.58 -10.11 -41.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849023351.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.168 kcal (2) G-P(sol) polarization free energy of solvation -31.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds