Wall clock time and date at job start Mon Mar 30 2020 01:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 N 1.46499 * 109.47260 * 180.27562 * 9 7 2 11 11 C 1.37480 * 120.00460 * 180.02562 * 10 9 7 12 12 N 1.30345 * 119.99876 * 0.02562 * 11 10 9 13 13 N 1.37481 * 120.00671 * 180.02562 * 11 10 9 14 14 C 1.46497 * 120.00701 * 180.02562 * 13 11 10 15 15 H 1.09000 * 109.43286 * 35.00090 * 14 13 11 16 16 C 1.53070 * 109.43773 * 154.91608 * 14 13 11 17 17 C 1.53411 * 108.29079 * 168.25553 * 16 14 13 18 18 O 1.42835 * 108.37245 * 295.25370 * 17 16 14 19 19 C 1.35844 * 117.85992 * 49.14769 * 18 17 16 20 20 C 1.39149 * 118.50241 * 162.98149 * 19 18 17 21 21 C 1.37968 * 120.21998 * 179.81838 * 20 19 18 22 22 C 1.38289 * 119.95862 * 359.97438 * 21 20 19 23 23 C 1.38105 * 119.98208 * 0.07853 * 22 21 20 24 24 C 1.38319 * 121.79259 * 342.88826 * 19 18 17 25 25 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 27 27 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 28 28 H 0.97002 * 119.99779 * 0.02562 * 10 9 7 29 29 H 0.97001 * 120.00465 * 179.97438 * 12 11 10 30 30 H 0.97002 * 119.99567 * 0.02562 * 13 11 10 31 31 H 1.08999 * 109.69797 * 287.95131 * 16 14 13 32 32 H 1.08993 * 109.70137 * 48.55895 * 16 14 13 33 33 H 1.09006 * 109.68431 * 54.96949 * 17 16 14 34 34 H 1.08997 * 109.68619 * 175.53224 * 17 16 14 35 35 H 1.08003 * 119.88450 * 359.84100 * 20 19 18 36 36 H 1.07993 * 120.01834 * 180.02562 * 21 20 19 37 37 H 1.08000 * 120.00820 * 180.02562 * 22 21 20 38 38 H 1.08003 * 119.84253 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 7 2.2032 -3.6125 0.0102 11 6 1.7450 -4.9088 0.0155 12 7 0.4635 -5.1470 0.0157 13 7 2.6384 -5.9537 0.0205 14 6 2.1502 -7.3350 0.0256 15 1 1.2361 -7.3987 -0.5646 16 6 3.2137 -8.2533 -0.5816 17 6 2.8128 -9.7069 -0.2989 18 8 2.8502 -9.9177 1.1133 19 6 2.2192 -9.0137 1.9070 20 6 1.9312 -9.3704 3.2208 21 6 1.2947 -8.4783 4.0590 22 6 0.9416 -7.2249 3.5935 23 6 1.2249 -6.8677 2.2898 24 6 1.8628 -7.7602 1.4432 25 1 -0.4850 0.8400 0.0004 26 1 0.6245 -2.5529 0.8956 27 1 0.6244 -2.5609 -0.8844 28 1 3.1568 -3.4352 0.0096 29 1 0.1402 -6.0616 0.0191 30 1 3.5921 -5.7764 0.0207 31 1 3.2688 -8.0901 -1.6579 32 1 4.1822 -8.0444 -0.1276 33 1 1.8043 -9.8886 -0.6706 34 1 3.5129 -10.3829 -0.7897 35 1 2.2072 -10.3487 3.5856 36 1 1.0731 -8.7584 5.0781 37 1 0.4437 -6.5257 4.2490 38 1 0.9477 -5.8884 1.9285 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849023351.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:39 Heat of formation + Delta-G solvation = 6.130013 kcal Electronic energy + Delta-G solvation = -20894.498577 eV Core-core repulsion = 17736.750282 eV Total energy + Delta-G solvation = -3157.748295 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.91364 -39.46478 -38.40965 -36.61156 -34.85033 -33.10007 -31.87456 -31.52592 -30.83629 -28.93405 -26.21214 -24.73284 -24.33158 -23.30505 -21.37086 -20.99348 -19.52438 -18.68980 -18.02373 -17.68107 -17.38319 -16.95458 -16.50466 -15.98130 -15.50235 -15.44831 -15.03970 -14.95852 -14.67104 -14.41029 -14.11810 -13.93554 -13.55333 -13.05247 -12.95781 -12.75875 -12.64768 -12.43188 -12.15827 -12.08533 -11.76532 -11.60664 -11.36731 -10.69398 -10.14707 -9.86917 -9.53069 -9.17948 -8.80294 -8.22526 -6.37545 0.28025 0.42546 1.43926 1.46338 1.57039 1.94821 2.23059 2.33547 2.42718 2.79106 3.11933 3.29100 3.53285 3.59842 3.73799 4.01348 4.09522 4.18773 4.33632 4.49066 4.50032 4.57063 4.65042 4.89935 4.91866 4.93213 5.05156 5.26575 5.29693 5.44276 5.49061 5.56801 5.60638 5.65676 5.80373 5.93043 6.33484 6.44377 6.53571 6.84308 7.26120 7.33703 8.09693 8.89277 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.028465 B = 0.003849 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.430777 B = 7272.696972 C = 7826.826048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.006 3.994 3 Si 0.980 3.020 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.259 1.259 7 C -0.557 4.557 8 H 0.076 0.924 9 C 0.305 3.695 10 N -0.713 5.713 11 C 0.633 3.367 12 N -0.864 5.864 13 N -0.755 5.755 14 C 0.202 3.798 15 H 0.078 0.922 16 C -0.153 4.153 17 C 0.062 3.938 18 O -0.323 6.323 19 C 0.132 3.868 20 C -0.161 4.161 21 C -0.078 4.078 22 C -0.170 4.170 23 C -0.099 4.099 24 C -0.191 4.191 25 H 0.267 0.733 26 H -0.016 1.016 27 H -0.015 1.015 28 H 0.403 0.597 29 H 0.332 0.668 30 H 0.399 0.601 31 H 0.111 0.889 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.146 0.854 35 H 0.151 0.849 36 H 0.157 0.843 37 H 0.124 0.876 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.966 -21.313 2.339 23.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.193 4.193 3 Si 0.803 3.197 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.183 1.183 7 C -0.595 4.595 8 H 0.094 0.906 9 C 0.182 3.818 10 N -0.354 5.354 11 C 0.267 3.733 12 N -0.518 5.518 13 N -0.401 5.401 14 C 0.096 3.904 15 H 0.096 0.904 16 C -0.191 4.191 17 C -0.013 4.013 18 O -0.237 6.237 19 C 0.086 3.914 20 C -0.179 4.179 21 C -0.096 4.096 22 C -0.188 4.188 23 C -0.117 4.117 24 C -0.193 4.193 25 H 0.076 0.924 26 H 0.001 0.999 27 H 0.003 0.997 28 H 0.239 0.761 29 H 0.149 0.851 30 H 0.235 0.765 31 H 0.129 0.871 32 H 0.106 0.894 33 H 0.091 0.909 34 H 0.163 0.837 35 H 0.168 0.832 36 H 0.174 0.826 37 H 0.142 0.858 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 7.866 -20.742 2.354 22.308 hybrid contribution 0.822 0.617 -0.085 1.031 sum 8.688 -20.125 2.269 22.037 Atomic orbital electron populations 1.70143 1.08068 1.28257 1.50229 1.25964 0.95722 1.03500 0.94150 0.85238 0.78457 0.77476 0.78495 1.19675 1.20936 1.18314 1.21675 0.94088 0.91207 1.52500 0.90596 1.18194 0.87495 0.82282 0.93835 1.44263 1.09352 1.01220 1.80599 1.19023 0.85835 0.81993 0.86448 1.69954 1.09605 1.27976 1.44241 1.45378 1.08512 1.02844 1.83334 1.19532 0.98623 0.80893 0.91339 0.90429 1.22442 0.98365 0.94582 1.03755 1.23256 1.04056 0.96255 0.77716 1.85975 1.70748 1.47535 1.19461 1.18810 0.93278 0.87659 0.91674 1.20886 1.03318 1.01972 0.91726 1.21257 0.95672 0.92185 1.00486 1.21277 1.03420 0.98248 0.95842 1.21535 0.96069 0.99619 0.94509 1.20442 1.05968 0.94504 0.98429 0.92431 0.99852 0.99720 0.76143 0.85124 0.76532 0.87085 0.89401 0.90882 0.83673 0.83160 0.82571 0.85779 0.86830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.71 13.29 21.45 0.28 -56.43 16 2 C 0.01 0.35 5.46 84.65 0.46 0.81 16 3 Si 0.98 43.20 29.54 68.60 2.03 45.23 16 4 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 6 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 7 C -0.56 -30.96 9.28 25.60 0.24 -30.72 16 8 H 0.08 3.87 7.60 -2.91 -0.02 3.85 16 9 C 0.31 16.96 5.42 85.63 0.46 17.43 16 10 N -0.71 -30.89 5.66 -353.14 -2.00 -32.89 16 11 C 0.63 24.78 7.28 260.54 1.90 26.67 16 12 N -0.86 -37.86 11.66 -58.53 -0.68 -38.54 16 13 N -0.76 -21.36 4.96 -332.19 -1.65 -23.01 16 14 C 0.20 4.92 2.48 44.29 0.11 5.03 16 15 H 0.08 2.06 6.68 -2.39 -0.02 2.04 16 16 C -0.15 -2.38 5.67 30.76 0.17 -2.21 16 17 C 0.06 0.84 7.03 72.12 0.51 1.34 16 18 O -0.32 -6.51 10.27 -91.80 -0.94 -7.45 16 19 C 0.13 3.16 6.47 22.51 0.15 3.31 16 20 C -0.16 -3.48 9.94 22.42 0.22 -3.26 16 21 C -0.08 -1.70 10.04 22.22 0.22 -1.48 16 22 C -0.17 -4.68 10.04 22.25 0.22 -4.46 16 23 C -0.10 -3.14 8.67 22.32 0.19 -2.95 16 24 C -0.19 -5.18 5.55 -19.74 -0.11 -5.29 16 25 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 26 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 27 H -0.02 -0.95 8.14 -2.38 -0.02 -0.97 16 28 H 0.40 15.09 8.42 -92.71 -0.78 14.31 16 29 H 0.33 13.07 5.96 -92.71 -0.55 12.52 16 30 H 0.40 9.47 8.67 -92.71 -0.80 8.67 16 31 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.09 1.33 8.11 -2.39 -0.02 1.32 16 33 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 34 H 0.15 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 36 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 37 H 0.12 3.25 8.06 -2.91 -0.02 3.23 16 38 H 0.11 4.38 4.54 -2.91 -0.01 4.37 16 Total: -1.00 -71.37 313.19 0.77 -70.60 By element: Atomic # 1 Polarization: 39.27 SS G_CDS: -1.03 Total: 38.24 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: 4.75 Total: 4.24 kcal Atomic # 7 Polarization: -146.82 SS G_CDS: -4.04 Total: -150.87 kcal Atomic # 8 Polarization: -6.51 SS G_CDS: -0.94 Total: -7.45 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -71.37 0.77 -70.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849023351.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.735 kcal (2) G-P(sol) polarization free energy of solvation -71.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds