Wall clock time and date at job start Mon Mar 30 2020 01:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 120.00076 * 2 1 4 4 H 1.48500 * 109.47426 * 270.00411 * 3 2 1 5 5 H 1.48496 * 109.47005 * 30.00857 * 3 2 1 6 6 H 1.48500 * 109.47046 * 150.00445 * 3 2 1 7 7 C 1.37871 * 120.00020 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00240 * 175.05495 * 7 2 1 9 9 C 1.50700 * 120.00071 * 355.32321 * 7 2 1 10 10 C 1.53005 * 115.54803 * 279.20888 * 9 7 2 11 11 O 1.42905 * 109.47081 * 294.87327 * 10 9 7 12 12 N 1.41595 * 114.00173 * 184.97339 * 11 10 9 13 13 C 1.36999 * 120.00341 * 185.01147 * 12 11 10 14 14 N 1.29327 * 119.99802 * 5.05795 * 13 12 11 15 15 C 1.50703 * 120.00281 * 185.04905 * 13 12 11 16 16 C 1.50695 * 109.47086 * 180.02562 * 15 13 12 17 17 C 1.38678 * 120.41867 * 269.72192 * 16 15 13 18 18 C 1.38628 * 118.41846 * 179.78488 * 17 16 15 19 19 C 1.38226 * 119.16142 * 0.51122 * 18 17 16 20 20 N 1.31850 * 120.76459 * 359.72917 * 19 18 17 21 21 C 1.31889 * 121.72797 * 359.97438 * 20 19 18 22 22 C 1.52999 * 117.49993 * 133.49866 * 9 7 2 23 23 C 1.52996 * 117.49778 * 64.87667 * 9 7 2 24 24 H 0.97002 * 119.99568 * 4.99005 * 1 2 3 25 25 H 1.08998 * 109.47143 * 54.87541 * 10 9 7 26 26 H 1.09004 * 109.47184 * 174.87813 * 10 9 7 27 27 H 0.97005 * 120.00100 * 5.01811 * 12 11 10 28 28 H 0.97000 * 120.00109 * 180.02562 * 14 13 12 29 29 H 1.09002 * 109.47119 * 300.00567 * 15 13 12 30 30 H 1.08998 * 109.46534 * 60.00743 * 15 13 12 31 31 H 1.07995 * 120.78978 * 0.02562 * 17 16 15 32 32 H 1.07997 * 120.42041 * 180.22337 * 18 17 16 33 33 H 1.08005 * 119.61894 * 179.74814 * 19 18 17 34 34 H 1.08001 * 119.61913 * 180.02562 * 21 20 19 35 35 H 1.08993 * 117.50200 * 0.02562 * 22 9 7 36 36 H 1.09001 * 117.49953 * 145.02030 * 22 9 7 37 37 H 1.09007 * 117.49811 * 214.98302 * 23 9 7 38 38 H 1.09001 * 117.50269 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0815 -1.1957 -0.0812 9 6 1.2548 -2.4970 0.1053 10 6 0.8317 -2.9019 1.5188 11 8 1.9946 -3.1530 2.3106 12 7 1.7128 -3.6435 3.6086 13 6 2.7304 -3.8287 4.5069 14 7 3.9340 -3.4643 4.2047 15 6 2.4475 -4.4568 5.8472 16 6 3.7258 -4.5454 6.6403 17 6 4.5304 -5.6714 6.5518 18 6 5.6994 -5.7071 7.2960 19 6 6.0166 -4.6313 8.1040 20 7 5.2250 -3.5788 8.1672 21 6 4.1083 -3.5079 7.4690 22 6 1.6415 -3.6153 -0.8646 23 6 0.3184 -2.8687 -1.0461 24 1 -0.4849 0.8369 -0.0731 25 1 0.2523 -2.0962 1.9695 26 1 0.2228 -3.8048 1.4712 27 1 0.7991 -3.8486 3.8618 28 1 4.6546 -3.5957 4.8405 29 1 1.7254 -3.8462 6.3894 30 1 2.0402 -5.4572 5.7009 31 1 4.2548 -6.4991 5.9153 32 1 6.3518 -6.5664 7.2487 33 1 6.9235 -4.6530 8.6901 34 1 3.4853 -2.6290 7.5464 35 1 2.4384 -3.4089 -1.5789 36 1 1.5947 -4.6400 -0.4957 37 1 -0.5989 -3.4022 -0.7967 38 1 0.2443 -2.1707 -1.8800 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853678524.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:41 Heat of formation + Delta-G solvation = 94.909290 kcal Electronic energy + Delta-G solvation = -20254.067920 eV Core-core repulsion = 17100.169384 eV Total energy + Delta-G solvation = -3153.898536 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.57351 -37.77630 -36.76858 -35.11821 -32.77975 -31.93660 -31.86083 -30.11238 -27.70465 -26.02607 -24.90114 -23.83730 -22.71668 -21.10125 -20.19476 -19.07466 -17.61027 -17.17606 -16.66008 -16.14863 -15.58144 -15.26536 -14.89046 -14.74433 -14.31989 -13.84242 -13.75210 -13.57929 -13.36065 -13.31413 -12.78177 -12.08455 -11.95008 -11.54443 -11.32633 -10.89529 -10.82766 -10.45543 -10.22009 -10.09118 -9.74542 -9.66426 -9.53692 -9.29814 -8.87045 -8.75015 -8.41467 -8.15989 -7.50715 -6.00778 -4.05396 0.77218 1.00085 2.64511 2.99960 3.34387 3.40863 3.49535 3.54586 4.15999 4.44762 4.46213 4.53486 4.69324 4.73080 4.83253 5.05534 5.10575 5.24199 5.28229 5.44180 5.47583 5.52059 5.81856 5.95673 5.96015 6.18125 6.31059 6.38321 6.40998 6.57365 6.75104 6.86604 7.05200 7.38121 7.49016 7.65144 7.70900 7.93581 8.20559 8.45081 8.96162 9.03772 9.60057 11.07417 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.022349 B = 0.003791 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.565741 B = 7384.410895 C = 8084.838320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.069 3.931 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.271 1.271 7 C -0.482 4.482 8 H 0.062 0.938 9 C 0.049 3.951 10 C 0.077 3.923 11 O -0.113 6.113 12 N -0.599 5.599 13 C 0.423 3.577 14 N -0.747 5.747 15 C -0.078 4.078 16 C -0.138 4.138 17 C -0.063 4.063 18 C -0.171 4.171 19 C 0.098 3.902 20 N -0.482 5.482 21 C 0.113 3.887 22 C -0.205 4.205 23 C -0.144 4.144 24 H 0.260 0.740 25 H 0.060 0.940 26 H 0.025 0.975 27 H 0.404 0.596 28 H 0.335 0.665 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.136 0.864 32 H 0.137 0.863 33 H 0.156 0.844 34 H 0.157 0.843 35 H 0.080 0.920 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.303 -12.480 14.756 19.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.133 4.133 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.195 1.195 7 C -0.520 4.520 8 H 0.081 0.919 9 C 0.047 3.953 10 C -0.001 4.001 11 O -0.115 6.115 12 N -0.285 5.285 13 C 0.138 3.862 14 N -0.381 5.381 15 C -0.121 4.121 16 C -0.141 4.141 17 C -0.089 4.089 18 C -0.191 4.191 19 C -0.059 4.059 20 N -0.190 5.190 21 C -0.044 4.044 22 C -0.242 4.242 23 C -0.182 4.182 24 H 0.069 0.931 25 H 0.079 0.921 26 H 0.043 0.957 27 H 0.244 0.756 28 H 0.152 0.848 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.154 0.846 32 H 0.155 0.845 33 H 0.173 0.827 34 H 0.174 0.826 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.070 -11.118 14.340 18.596 hybrid contribution -0.504 -0.260 0.336 0.659 sum 3.566 -11.378 14.676 18.909 Atomic orbital electron populations 1.69979 1.05854 1.26734 1.49820 1.24965 0.94852 0.98993 0.94482 0.86584 0.80265 0.83196 0.78055 1.20707 1.21243 1.19540 1.20429 0.92990 0.88315 1.50222 0.91938 1.18589 0.99072 0.93454 0.84169 1.22740 0.87452 0.96841 0.93060 1.90776 1.25993 1.85517 1.09218 1.45370 1.06475 1.71047 1.05650 1.20681 0.88994 0.90937 0.85556 1.69013 1.00074 1.29471 1.39494 1.20313 0.95649 1.03267 0.92900 1.20551 0.97780 0.96081 0.99678 1.21568 0.93367 0.97427 0.96546 1.22164 0.97933 1.00677 0.98344 1.22840 0.98183 0.88881 0.95957 1.67740 1.04301 1.25703 1.21291 1.22772 0.93053 0.97294 0.91314 1.22966 0.99375 0.95834 1.06005 1.22555 0.91329 1.01772 1.02571 0.93084 0.92131 0.95660 0.75586 0.84837 0.88211 0.88326 0.84594 0.84544 0.82652 0.82579 0.90178 0.91559 0.91886 0.89392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.06 12.85 55.43 0.71 -24.35 16 2 C 0.07 1.94 5.44 -17.82 -0.10 1.85 16 3 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.48 -13.66 8.75 -34.44 -0.30 -13.96 16 8 H 0.06 1.83 7.82 -52.49 -0.41 1.42 16 9 C 0.05 1.23 1.61 -155.66 -0.25 0.98 16 10 C 0.08 1.74 6.05 37.16 0.22 1.97 16 11 O -0.11 -2.57 11.04 -11.47 -0.13 -2.70 16 12 N -0.60 -10.14 6.48 32.83 0.21 -9.93 16 13 C 0.42 6.50 7.97 -154.56 -1.23 5.27 16 14 N -0.75 -13.97 13.52 32.89 0.44 -13.52 16 15 C -0.08 -0.76 5.88 -29.04 -0.17 -0.93 16 16 C -0.14 -1.40 3.47 -104.48 -0.36 -1.77 16 17 C -0.06 -0.57 9.70 -39.28 -0.38 -0.95 16 18 C -0.17 -1.41 10.11 -39.44 -0.40 -1.81 16 19 C 0.10 0.91 11.18 -17.55 -0.20 0.72 16 20 N -0.48 -5.64 10.36 -13.25 -0.14 -5.78 16 21 C 0.11 1.25 10.68 -17.55 -0.19 1.06 16 22 C -0.20 -4.59 9.96 -26.73 -0.27 -4.85 16 23 C -0.14 -3.35 9.39 -26.73 -0.25 -3.60 16 24 H 0.26 7.03 8.32 -40.82 -0.34 6.69 16 25 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 26 H 0.03 0.50 8.09 -51.93 -0.42 0.08 16 27 H 0.40 5.27 8.58 -40.82 -0.35 4.92 16 28 H 0.33 5.61 6.60 -40.82 -0.27 5.34 16 29 H 0.10 0.76 8.09 -51.93 -0.42 0.34 16 30 H 0.10 0.73 8.09 -51.93 -0.42 0.31 16 31 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 32 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 33 H 0.16 1.02 8.06 -52.48 -0.42 0.59 16 34 H 0.16 1.55 8.06 -52.49 -0.42 1.13 16 35 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 36 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.06 1.33 8.14 -51.92 -0.42 0.91 16 38 H 0.09 2.17 8.14 -51.93 -0.42 1.75 16 LS Contribution 333.85 15.07 5.03 5.03 Total: -1.00 -33.94 333.85 -7.99 -41.92 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -5.23 Total: 8.41 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: -3.87 Total: -16.03 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: 1.23 Total: -53.58 kcal Atomic # 8 Polarization: -2.57 SS G_CDS: -0.13 Total: -2.70 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.94 -7.99 -41.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853678524.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.833 kcal (2) G-P(sol) polarization free energy of solvation -33.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds