Wall clock time and date at job start Mon Mar 30 2020 01:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 120.00076 * 2 1 4 4 H 1.48500 * 109.47426 * 270.00411 * 3 2 1 5 5 H 1.48496 * 109.47005 * 30.00857 * 3 2 1 6 6 H 1.48500 * 109.47046 * 150.00445 * 3 2 1 7 7 C 1.37871 * 120.00020 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00240 * 175.05495 * 7 2 1 9 9 C 1.50700 * 120.00071 * 355.32321 * 7 2 1 10 10 C 1.53005 * 115.54803 * 279.20888 * 9 7 2 11 11 O 1.42905 * 109.47081 * 294.87327 * 10 9 7 12 12 N 1.41595 * 114.00173 * 184.97339 * 11 10 9 13 13 C 1.36999 * 120.00341 * 185.01147 * 12 11 10 14 14 N 1.29327 * 119.99802 * 5.05795 * 13 12 11 15 15 C 1.50703 * 120.00281 * 185.04905 * 13 12 11 16 16 C 1.50695 * 109.47086 * 180.02562 * 15 13 12 17 17 C 1.38678 * 120.41867 * 269.72192 * 16 15 13 18 18 C 1.38628 * 118.41846 * 179.78488 * 17 16 15 19 19 C 1.38226 * 119.16142 * 0.51122 * 18 17 16 20 20 N 1.31850 * 120.76459 * 359.72917 * 19 18 17 21 21 C 1.31889 * 121.72797 * 359.97438 * 20 19 18 22 22 C 1.52999 * 117.49993 * 133.49866 * 9 7 2 23 23 C 1.52996 * 117.49778 * 64.87667 * 9 7 2 24 24 H 0.97002 * 119.99568 * 4.99005 * 1 2 3 25 25 H 1.08998 * 109.47143 * 54.87541 * 10 9 7 26 26 H 1.09004 * 109.47184 * 174.87813 * 10 9 7 27 27 H 0.97005 * 120.00100 * 5.01811 * 12 11 10 28 28 H 0.97000 * 120.00109 * 180.02562 * 14 13 12 29 29 H 1.09002 * 109.47119 * 300.00567 * 15 13 12 30 30 H 1.08998 * 109.46534 * 60.00743 * 15 13 12 31 31 H 1.07995 * 120.78978 * 0.02562 * 17 16 15 32 32 H 1.07997 * 120.42041 * 180.22337 * 18 17 16 33 33 H 1.08005 * 119.61894 * 179.74814 * 19 18 17 34 34 H 1.08001 * 119.61913 * 180.02562 * 21 20 19 35 35 H 1.08993 * 117.50200 * 0.02562 * 22 9 7 36 36 H 1.09001 * 117.49953 * 145.02030 * 22 9 7 37 37 H 1.09007 * 117.49811 * 214.98302 * 23 9 7 38 38 H 1.09001 * 117.50269 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0815 -1.1957 -0.0812 9 6 1.2548 -2.4970 0.1053 10 6 0.8317 -2.9019 1.5188 11 8 1.9946 -3.1530 2.3106 12 7 1.7128 -3.6435 3.6086 13 6 2.7304 -3.8287 4.5069 14 7 3.9340 -3.4643 4.2047 15 6 2.4475 -4.4568 5.8472 16 6 3.7258 -4.5454 6.6403 17 6 4.5304 -5.6714 6.5518 18 6 5.6994 -5.7071 7.2960 19 6 6.0166 -4.6313 8.1040 20 7 5.2250 -3.5788 8.1672 21 6 4.1083 -3.5079 7.4690 22 6 1.6415 -3.6153 -0.8646 23 6 0.3184 -2.8687 -1.0461 24 1 -0.4849 0.8369 -0.0731 25 1 0.2523 -2.0962 1.9695 26 1 0.2228 -3.8048 1.4712 27 1 0.7991 -3.8486 3.8618 28 1 4.6546 -3.5957 4.8405 29 1 1.7254 -3.8462 6.3894 30 1 2.0402 -5.4572 5.7009 31 1 4.2548 -6.4991 5.9153 32 1 6.3518 -6.5664 7.2487 33 1 6.9235 -4.6530 8.6901 34 1 3.4853 -2.6290 7.5464 35 1 2.4384 -3.4089 -1.5789 36 1 1.5947 -4.6400 -0.4957 37 1 -0.5989 -3.4022 -0.7967 38 1 0.2443 -2.1707 -1.8800 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853678524.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:40 Heat of formation + Delta-G solvation = 73.284124 kcal Electronic energy + Delta-G solvation = -20255.005658 eV Core-core repulsion = 17100.169384 eV Total energy + Delta-G solvation = -3154.836274 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.31229 -39.29031 -38.26431 -36.59362 -34.02792 -33.66426 -32.67835 -31.48551 -28.66499 -27.85707 -26.78276 -24.55143 -23.54339 -22.90914 -21.57819 -20.83021 -18.91918 -18.07306 -17.94191 -17.39899 -16.81162 -16.69900 -16.26281 -16.05181 -15.90314 -15.43214 -14.82774 -14.55356 -14.35678 -14.26208 -13.98476 -13.82533 -13.47336 -12.94491 -12.87296 -12.69841 -12.49128 -12.34713 -12.05146 -11.43692 -11.29138 -10.81744 -10.79413 -10.46099 -10.43654 -10.07259 -10.05702 -9.94373 -8.94728 -8.13217 -6.22836 0.04571 0.30056 1.26523 1.36798 1.39435 1.50351 1.81708 2.41278 2.80687 3.14878 3.37435 3.48023 3.70618 3.82570 3.89996 3.90188 4.02536 4.08714 4.24320 4.44712 4.48576 4.49730 4.59056 4.73076 4.75266 4.78878 4.85400 4.98858 5.15346 5.22453 5.26099 5.27263 5.55427 5.64817 5.73121 5.76538 6.37913 6.43235 6.76350 6.79691 6.98685 7.44301 7.83532 8.93971 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.022349 B = 0.003791 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.565741 B = 7384.410895 C = 8084.838320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.032 3.968 3 Si 0.943 3.057 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.282 1.282 7 C -0.504 4.504 8 H 0.037 0.963 9 C 0.012 3.988 10 C 0.095 3.905 11 O -0.153 6.153 12 N -0.592 5.592 13 C 0.426 3.574 14 N -0.803 5.803 15 C -0.063 4.063 16 C -0.146 4.146 17 C -0.069 4.069 18 C -0.167 4.167 19 C 0.087 3.913 20 N -0.513 5.513 21 C 0.094 3.906 22 C -0.187 4.187 23 C -0.137 4.137 24 H 0.262 0.738 25 H 0.035 0.965 26 H 0.056 0.944 27 H 0.423 0.577 28 H 0.340 0.660 29 H 0.124 0.876 30 H 0.131 0.869 31 H 0.154 0.846 32 H 0.166 0.834 33 H 0.179 0.821 34 H 0.157 0.843 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.976 -14.198 15.760 21.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.169 4.169 3 Si 0.769 3.231 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.208 1.208 7 C -0.542 4.542 8 H 0.056 0.944 9 C 0.010 3.990 10 C 0.017 3.983 11 O -0.157 6.157 12 N -0.281 5.281 13 C 0.143 3.857 14 N -0.439 5.439 15 C -0.106 4.106 16 C -0.149 4.149 17 C -0.095 4.095 18 C -0.187 4.187 19 C -0.069 4.069 20 N -0.222 5.222 21 C -0.062 4.062 22 C -0.224 4.224 23 C -0.175 4.175 24 H 0.071 0.929 25 H 0.053 0.947 26 H 0.074 0.926 27 H 0.266 0.734 28 H 0.158 0.842 29 H 0.142 0.858 30 H 0.149 0.851 31 H 0.171 0.829 32 H 0.184 0.816 33 H 0.196 0.804 34 H 0.174 0.826 35 H 0.092 0.908 36 H 0.111 0.889 37 H 0.104 0.896 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.716 -12.846 15.349 20.357 hybrid contribution -0.309 0.215 0.092 0.387 sum 3.408 -12.631 15.441 20.238 Atomic orbital electron populations 1.70033 1.06483 1.27361 1.50223 1.25514 0.95659 1.01360 0.94341 0.85791 0.78669 0.80294 0.78355 1.19639 1.20379 1.20752 1.20593 0.92176 0.90628 1.50784 0.94426 1.18748 1.00560 0.93385 0.86300 1.22354 0.87239 0.97202 0.91507 1.90709 1.26814 1.85943 1.12204 1.45543 1.08122 1.70900 1.03579 1.21428 0.88077 0.89421 0.86791 1.68961 1.01807 1.31852 1.41231 1.20311 0.96182 1.04826 0.89236 1.20592 0.98267 0.96302 0.99707 1.21893 0.93418 0.97586 0.96608 1.22502 0.97895 1.01129 0.97134 1.23324 0.98608 0.88655 0.96329 1.67717 1.05045 1.27129 1.22318 1.22895 0.93356 0.97877 0.92112 1.22958 0.98576 0.96387 1.04460 1.22467 0.92543 1.01513 1.00975 0.92906 0.94685 0.92556 0.73373 0.84192 0.85812 0.85096 0.82853 0.81640 0.80421 0.82587 0.90849 0.88938 0.89553 0.91571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.30 12.85 21.44 0.28 -51.02 16 2 C 0.03 1.79 5.44 84.65 0.46 2.25 16 3 Si 0.94 45.67 29.54 68.60 2.03 47.69 16 4 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 5 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 6 H -0.28 -14.06 7.11 99.48 0.71 -13.36 16 7 C -0.50 -29.17 8.75 25.60 0.22 -28.95 16 8 H 0.04 2.29 7.82 -2.91 -0.02 2.27 16 9 C 0.01 0.60 1.61 -52.93 -0.09 0.51 16 10 C 0.09 4.22 6.05 71.98 0.44 4.66 16 11 O -0.15 -6.96 11.04 -38.77 -0.43 -7.39 16 12 N -0.59 -19.19 6.48 -50.05 -0.32 -19.51 16 13 C 0.43 12.49 7.97 137.83 1.10 13.58 16 14 N -0.80 -29.83 13.52 -49.84 -0.67 -30.50 16 15 C -0.06 -1.05 5.88 29.10 0.17 -0.88 16 16 C -0.15 -2.70 3.47 -19.77 -0.07 -2.77 16 17 C -0.07 -1.09 9.70 22.47 0.22 -0.88 16 18 C -0.17 -2.36 10.11 22.36 0.23 -2.13 16 19 C 0.09 1.50 11.18 84.69 0.95 2.45 16 20 N -0.51 -11.74 10.36 -195.84 -2.03 -13.77 16 21 C 0.09 2.03 10.68 84.67 0.90 2.93 16 22 C -0.19 -8.17 9.96 30.59 0.30 -7.86 16 23 C -0.14 -6.26 9.39 30.59 0.29 -5.97 16 24 H 0.26 14.17 8.32 -92.71 -0.77 13.40 16 25 H 0.03 1.70 8.14 -2.39 -0.02 1.69 16 26 H 0.06 2.11 8.09 -2.38 -0.02 2.09 16 27 H 0.42 10.08 8.58 -92.70 -0.80 9.29 16 28 H 0.34 11.38 6.60 -92.71 -0.61 10.77 16 29 H 0.12 1.51 8.09 -2.39 -0.02 1.49 16 30 H 0.13 1.39 8.09 -2.39 -0.02 1.37 16 31 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 32 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 33 H 0.18 2.01 8.06 -2.91 -0.02 1.99 16 34 H 0.16 3.11 8.06 -2.91 -0.02 3.08 16 35 H 0.07 3.26 8.14 -2.39 -0.02 3.24 16 36 H 0.09 3.53 8.14 -2.39 -0.02 3.51 16 37 H 0.09 3.48 8.14 -2.38 -0.02 3.46 16 38 H 0.07 3.27 8.14 -2.39 -0.02 3.25 16 Total: -1.00 -74.81 333.85 3.64 -71.17 By element: Atomic # 1 Polarization: 26.72 SS G_CDS: -0.33 Total: 26.39 kcal Atomic # 6 Polarization: -28.18 SS G_CDS: 5.12 Total: -23.06 kcal Atomic # 7 Polarization: -112.06 SS G_CDS: -2.75 Total: -114.81 kcal Atomic # 8 Polarization: -6.96 SS G_CDS: -0.43 Total: -7.39 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.69 kcal Total: -74.81 3.64 -71.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853678524.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.453 kcal (2) G-P(sol) polarization free energy of solvation -74.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds