Wall clock time and date at job start Mon Mar 30 2020 01:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35938 * 117.00189 * 2 1 4 4 C 1.35069 * 119.99520 * 114.36085 * 3 2 1 5 5 C 1.47176 * 120.00455 * 8.21656 * 4 3 2 6 6 C 1.39828 * 120.17181 * 187.26856 * 5 4 3 7 7 C 1.37895 * 119.82656 * 179.76620 * 6 5 4 8 8 C 1.38399 * 120.16773 * 0.51433 * 7 6 5 9 9 C 1.38397 * 120.34883 * 359.74454 * 8 7 6 10 10 C 1.37887 * 120.17165 * 359.97438 * 9 8 7 11 11 C 1.46948 * 120.00122 * 294.63677 * 3 2 1 12 12 O 1.21664 * 119.99995 * 179.72462 * 11 3 2 13 13 N 1.34779 * 119.99850 * 359.72275 * 11 3 2 14 14 C 1.46502 * 119.99975 * 180.02562 * 13 11 3 15 15 C 1.52998 * 109.47000 * 180.02562 * 14 13 11 16 16 C 1.50706 * 109.46850 * 179.97438 * 15 14 13 17 17 H 1.08002 * 120.00050 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99825 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99980 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99811 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47379 * 89.99887 * 20 18 16 22 22 H 1.48507 * 109.46844 * 209.99893 * 20 18 16 23 23 H 1.48496 * 109.47188 * 329.99740 * 20 18 16 24 24 H 1.08999 * 109.46945 * 293.83483 * 1 2 3 25 25 H 1.09004 * 109.46535 * 53.83376 * 1 2 3 26 26 H 1.09004 * 109.47051 * 173.83434 * 1 2 3 27 27 H 1.07997 * 119.99239 * 188.22025 * 4 3 2 28 28 H 1.08002 * 120.08722 * 0.02562 * 6 5 4 29 29 H 1.07996 * 119.91580 * 180.25159 * 7 6 5 30 30 H 1.08001 * 119.82219 * 179.71334 * 8 7 6 31 31 H 1.08000 * 119.91304 * 180.02562 * 9 8 7 32 32 H 1.07994 * 120.08940 * 180.02562 * 10 9 8 33 33 H 0.96997 * 120.00008 * 0.02562 * 13 11 3 34 34 H 1.08999 * 109.46899 * 299.99973 * 14 13 11 35 35 H 1.08997 * 109.46973 * 59.99950 * 14 13 11 36 36 H 1.08999 * 109.47163 * 299.99678 * 15 14 13 37 37 H 1.08997 * 109.47407 * 60.00082 * 15 14 13 38 38 H 0.97005 * 119.99727 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2112 0.0000 4 6 2.7827 1.5938 1.0656 5 6 3.0676 0.6354 2.1456 6 6 3.6972 1.0646 3.3181 7 6 3.9564 0.1615 4.3274 8 6 3.6047 -1.1687 4.1779 9 6 2.9861 -1.6022 3.0182 10 6 2.7150 -0.7103 2.0023 11 6 1.9072 2.1067 -1.1567 12 8 2.4554 3.1928 -1.1546 13 7 1.1723 1.7249 -2.2201 14 6 1.0340 2.6174 -3.3735 15 6 0.1558 1.9491 -4.4332 16 6 0.0131 2.8676 -5.6195 17 1 0.5005 3.8313 -5.6179 18 6 -0.7397 2.4774 -6.7067 19 7 -1.3328 1.3036 -6.7088 20 14 -0.9159 3.6155 -8.1774 21 1 0.1743 3.3425 -9.1481 22 1 -2.2295 3.3817 -8.8296 23 1 -0.8328 5.0270 -7.7238 24 1 -0.3633 0.4153 0.9400 25 1 -0.3632 0.6065 -0.8297 26 1 -0.3633 -1.0218 -0.1104 27 1 3.1625 2.6030 1.1251 28 1 3.9760 2.1015 3.4346 29 1 4.4390 0.4922 5.2352 30 1 3.8145 -1.8721 4.9701 31 1 2.7143 -2.6418 2.9091 32 1 2.2319 -1.0500 1.0981 33 1 0.7349 0.8591 -2.2216 34 1 0.5721 3.5523 -3.0562 35 1 2.0185 2.8229 -3.7939 36 1 0.6173 1.0141 -4.7506 37 1 -0.8286 1.7440 -4.0125 38 1 -1.8621 1.0289 -7.4739 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857178644.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:02 Heat of formation + Delta-G solvation = -32.878741 kcal Electronic energy + Delta-G solvation = -20153.157270 eV Core-core repulsion = 16961.424677 eV Total energy + Delta-G solvation = -3191.732592 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.32938 -39.01234 -37.94325 -35.08124 -33.28135 -32.81423 -31.05237 -30.08099 -29.27952 -26.96717 -25.33689 -23.53712 -22.70135 -21.44643 -20.80576 -19.81704 -18.13915 -16.78324 -16.66076 -16.27486 -15.82248 -15.25146 -15.04205 -14.75252 -14.58573 -14.30382 -13.98944 -13.46793 -13.28770 -13.11761 -13.00949 -12.94507 -12.32407 -11.93074 -11.42084 -11.25662 -11.19256 -11.06619 -10.71905 -10.62946 -10.39250 -10.06765 -9.76820 -9.46135 -9.19287 -9.06097 -8.64321 -8.42894 -8.10289 -6.12345 -4.15402 0.41501 1.30534 1.87818 3.11533 3.27808 3.33793 3.37167 3.47789 3.62202 3.89053 4.38914 4.65122 4.74220 4.82727 4.95753 5.07622 5.19284 5.24136 5.24851 5.33334 5.45345 5.53894 5.69005 5.82337 5.92546 6.05091 6.24461 6.28586 6.31063 6.45294 6.58551 6.66814 6.77491 6.87703 7.14370 7.47492 7.56362 7.85348 7.91134 8.22967 8.47544 8.90295 9.49648 10.99256 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.045543 B = 0.003008 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.649953 B = 9306.098907 C = 9787.069861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.324 6.324 3 C 0.015 3.985 4 C -0.062 4.062 5 C -0.066 4.066 6 C -0.102 4.102 7 C -0.130 4.130 8 C -0.116 4.116 9 C -0.130 4.130 10 C -0.102 4.102 11 C 0.528 3.472 12 O -0.541 6.541 13 N -0.714 5.714 14 C 0.119 3.881 15 C 0.013 3.987 16 C -0.522 4.522 17 H 0.060 0.940 18 C 0.059 3.941 19 N -0.894 5.894 20 Si 0.898 3.102 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.272 1.272 24 H 0.052 0.948 25 H 0.057 0.943 26 H 0.101 0.899 27 H 0.150 0.850 28 H 0.124 0.876 29 H 0.121 0.879 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.163 0.837 33 H 0.399 0.601 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.023 0.977 37 H 0.022 0.978 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.016 -6.141 20.836 22.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.241 6.241 3 C -0.031 4.031 4 C -0.082 4.082 5 C -0.066 4.066 6 C -0.120 4.120 7 C -0.148 4.148 8 C -0.134 4.134 9 C -0.148 4.148 10 C -0.119 4.119 11 C 0.314 3.686 12 O -0.421 6.421 13 N -0.364 5.364 14 C -0.003 4.003 15 C -0.025 4.025 16 C -0.561 4.561 17 H 0.078 0.922 18 C -0.143 4.143 19 N -0.533 5.533 20 Si 0.725 3.275 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.197 1.197 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.119 0.881 27 H 0.167 0.833 28 H 0.142 0.858 29 H 0.139 0.861 30 H 0.137 0.863 31 H 0.140 0.860 32 H 0.179 0.821 33 H 0.235 0.765 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.041 0.959 37 H 0.040 0.960 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.337 -5.648 20.671 22.346 hybrid contribution -0.517 0.254 -0.873 1.046 sum 5.821 -5.394 19.798 21.329 Atomic orbital electron populations 1.23223 0.78643 1.04044 1.01676 1.85953 1.20336 1.25236 1.92610 1.21133 1.01107 0.86736 0.94173 1.22438 0.98338 0.98333 0.89134 1.18960 1.00132 0.93493 0.94023 1.21370 0.97911 0.99768 0.92912 1.21029 1.01210 0.93569 0.99025 1.21290 0.98544 0.95884 0.97703 1.21209 0.99786 0.99820 0.93994 1.22533 0.96699 0.92311 1.00405 1.18673 0.79952 0.86605 0.83406 1.90799 1.47842 1.22085 1.81400 1.46474 1.50182 1.21701 1.18052 1.21811 1.00984 0.92785 0.84738 1.19329 0.94299 0.96588 0.92271 1.21038 1.31310 1.02865 1.00872 0.92196 1.24999 0.95324 0.95297 0.98657 1.69956 1.32761 1.19695 1.30858 0.86499 0.77460 0.81081 0.82445 1.20520 1.21147 1.19721 0.92951 0.92422 0.88086 0.83287 0.85754 0.86085 0.86338 0.86021 0.82061 0.76488 0.92252 0.92244 0.95862 0.95975 0.92805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 10.63 101.05 1.07 1.26 16 2 O -0.32 -4.03 6.03 -19.55 -0.12 -4.14 16 3 C 0.01 0.21 5.94 -37.18 -0.22 -0.01 16 4 C -0.06 -0.81 9.46 -37.08 -0.35 -1.16 16 5 C -0.07 -0.78 5.86 -105.07 -0.62 -1.39 16 6 C -0.10 -1.03 9.80 -39.11 -0.38 -1.41 16 7 C -0.13 -1.16 10.03 -39.65 -0.40 -1.56 16 8 C -0.12 -1.02 10.04 -39.46 -0.40 -1.42 16 9 C -0.13 -1.25 10.03 -39.65 -0.40 -1.65 16 10 C -0.10 -1.16 9.06 -39.11 -0.35 -1.51 16 11 C 0.53 9.36 7.60 -12.73 -0.10 9.26 16 12 O -0.54 -11.22 16.26 5.22 0.08 -11.14 16 13 N -0.71 -12.84 5.04 -61.53 -0.31 -13.15 16 14 C 0.12 2.53 5.61 -4.04 -0.02 2.51 16 15 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 16 C -0.52 -14.41 9.11 -34.44 -0.31 -14.72 16 17 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -25.94 13.29 55.43 0.74 -25.20 16 20 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.65 5.89 -51.93 -0.31 0.35 16 26 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.15 1.89 7.56 -52.49 -0.40 1.49 16 28 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 29 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 30 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 31 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.16 1.85 4.70 -54.07 -0.25 1.59 16 33 H 0.40 6.42 6.01 -40.82 -0.25 6.17 16 34 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 35 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 36 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 326.48 15.07 4.92 4.92 Total: -1.00 -31.53 326.48 -7.39 -38.92 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -4.97 Total: 3.63 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: -2.71 Total: -10.09 kcal Atomic # 7 Polarization: -38.78 SS G_CDS: 0.43 Total: -38.35 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: -0.03 Total: -15.28 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.53 -7.39 -38.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857178644.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.045 kcal (2) G-P(sol) polarization free energy of solvation -31.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds