Wall clock time and date at job start Mon Mar 30 2020 01:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35938 * 117.00189 * 2 1 4 4 C 1.35069 * 119.99520 * 114.36085 * 3 2 1 5 5 C 1.47176 * 120.00455 * 8.21656 * 4 3 2 6 6 C 1.39828 * 120.17181 * 187.26856 * 5 4 3 7 7 C 1.37895 * 119.82656 * 179.76620 * 6 5 4 8 8 C 1.38399 * 120.16773 * 0.51433 * 7 6 5 9 9 C 1.38397 * 120.34883 * 359.74454 * 8 7 6 10 10 C 1.37887 * 120.17165 * 359.97438 * 9 8 7 11 11 C 1.46948 * 120.00122 * 294.63677 * 3 2 1 12 12 O 1.21664 * 119.99995 * 179.72462 * 11 3 2 13 13 N 1.34779 * 119.99850 * 359.72275 * 11 3 2 14 14 C 1.46502 * 119.99975 * 180.02562 * 13 11 3 15 15 C 1.52998 * 109.47000 * 180.02562 * 14 13 11 16 16 C 1.50706 * 109.46850 * 179.97438 * 15 14 13 17 17 H 1.08002 * 120.00050 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99825 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99980 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99811 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47379 * 89.99887 * 20 18 16 22 22 H 1.48507 * 109.46844 * 209.99893 * 20 18 16 23 23 H 1.48496 * 109.47188 * 329.99740 * 20 18 16 24 24 H 1.08999 * 109.46945 * 293.83483 * 1 2 3 25 25 H 1.09004 * 109.46535 * 53.83376 * 1 2 3 26 26 H 1.09004 * 109.47051 * 173.83434 * 1 2 3 27 27 H 1.07997 * 119.99239 * 188.22025 * 4 3 2 28 28 H 1.08002 * 120.08722 * 0.02562 * 6 5 4 29 29 H 1.07996 * 119.91580 * 180.25159 * 7 6 5 30 30 H 1.08001 * 119.82219 * 179.71334 * 8 7 6 31 31 H 1.08000 * 119.91304 * 180.02562 * 9 8 7 32 32 H 1.07994 * 120.08940 * 180.02562 * 10 9 8 33 33 H 0.96997 * 120.00008 * 0.02562 * 13 11 3 34 34 H 1.08999 * 109.46899 * 299.99973 * 14 13 11 35 35 H 1.08997 * 109.46973 * 59.99950 * 14 13 11 36 36 H 1.08999 * 109.47163 * 299.99678 * 15 14 13 37 37 H 1.08997 * 109.47407 * 60.00082 * 15 14 13 38 38 H 0.97005 * 119.99727 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2112 0.0000 4 6 2.7827 1.5938 1.0656 5 6 3.0676 0.6354 2.1456 6 6 3.6972 1.0646 3.3181 7 6 3.9564 0.1615 4.3274 8 6 3.6047 -1.1687 4.1779 9 6 2.9861 -1.6022 3.0182 10 6 2.7150 -0.7103 2.0023 11 6 1.9072 2.1067 -1.1567 12 8 2.4554 3.1928 -1.1546 13 7 1.1723 1.7249 -2.2201 14 6 1.0340 2.6174 -3.3735 15 6 0.1558 1.9491 -4.4332 16 6 0.0131 2.8676 -5.6195 17 1 0.5005 3.8313 -5.6179 18 6 -0.7397 2.4774 -6.7067 19 7 -1.3328 1.3036 -6.7088 20 14 -0.9159 3.6155 -8.1774 21 1 0.1743 3.3425 -9.1481 22 1 -2.2295 3.3817 -8.8296 23 1 -0.8328 5.0270 -7.7238 24 1 -0.3633 0.4153 0.9400 25 1 -0.3632 0.6065 -0.8297 26 1 -0.3633 -1.0218 -0.1104 27 1 3.1625 2.6030 1.1251 28 1 3.9760 2.1015 3.4346 29 1 4.4390 0.4922 5.2352 30 1 3.8145 -1.8721 4.9701 31 1 2.7143 -2.6418 2.9091 32 1 2.2319 -1.0500 1.0981 33 1 0.7349 0.8591 -2.2216 34 1 0.5721 3.5523 -3.0562 35 1 2.0185 2.8229 -3.7939 36 1 0.6173 1.0141 -4.7506 37 1 -0.8286 1.7440 -4.0125 38 1 -1.8621 1.0289 -7.4739 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000857178644.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:02 Heat of formation + Delta-G solvation = -51.754670 kcal Electronic energy + Delta-G solvation = -20153.975791 eV Core-core repulsion = 16961.424677 eV Total energy + Delta-G solvation = -3192.551114 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.48558 -40.00968 -38.99202 -36.77326 -34.89754 -34.12911 -31.80897 -31.75351 -30.40631 -27.85396 -27.09550 -24.86038 -23.47673 -22.95464 -22.16832 -20.96577 -19.35905 -18.52115 -17.65743 -17.46959 -16.88211 -16.54479 -16.48141 -16.22853 -15.95820 -15.40570 -15.11693 -14.79321 -14.55240 -14.31420 -14.02008 -13.87470 -13.77939 -13.27045 -12.97269 -12.75766 -12.54696 -12.30272 -12.21760 -11.98512 -11.85486 -11.63120 -11.43304 -10.98899 -10.62919 -10.54697 -10.15100 -9.80214 -9.04211 -8.25887 -6.36677 -0.55296 0.56949 0.95342 1.41256 1.41735 1.53184 1.87764 2.10697 2.41652 2.61447 3.02729 3.08913 3.52362 3.95009 4.05436 4.19068 4.32652 4.38295 4.42094 4.43348 4.44731 4.57060 4.63800 4.72785 4.79272 4.83338 4.99738 5.11237 5.16474 5.30261 5.41715 5.52912 5.59023 5.69130 5.73812 5.76288 6.07300 6.12497 6.14788 6.54857 6.75971 7.04320 7.32773 8.86057 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.045543 B = 0.003008 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.649953 B = 9306.098907 C = 9787.069861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.321 6.321 3 C -0.006 4.006 4 C -0.038 4.038 5 C -0.094 4.094 6 C -0.105 4.105 7 C -0.134 4.134 8 C -0.110 4.110 9 C -0.138 4.138 10 C -0.112 4.112 11 C 0.528 3.472 12 O -0.577 6.577 13 N -0.711 5.711 14 C 0.137 3.863 15 C 0.023 3.977 16 C -0.548 4.548 17 H 0.060 0.940 18 C 0.007 3.993 19 N -0.926 5.926 20 Si 0.966 3.034 21 H -0.272 1.272 22 H -0.279 1.279 23 H -0.266 1.266 24 H 0.061 0.939 25 H 0.042 0.958 26 H 0.127 0.873 27 H 0.149 0.851 28 H 0.138 0.862 29 H 0.148 0.852 30 H 0.147 0.853 31 H 0.141 0.859 32 H 0.157 0.843 33 H 0.409 0.591 34 H 0.053 0.947 35 H 0.049 0.951 36 H 0.007 0.993 37 H 0.010 0.990 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.540 -6.703 22.482 24.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.238 6.238 3 C -0.053 4.053 4 C -0.058 4.058 5 C -0.094 4.094 6 C -0.123 4.123 7 C -0.152 4.152 8 C -0.128 4.128 9 C -0.156 4.156 10 C -0.129 4.129 11 C 0.317 3.683 12 O -0.460 6.460 13 N -0.362 5.362 14 C 0.014 3.986 15 C -0.014 4.014 16 C -0.586 4.586 17 H 0.078 0.922 18 C -0.191 4.191 19 N -0.565 5.565 20 Si 0.790 3.210 21 H -0.198 1.198 22 H -0.204 1.204 23 H -0.190 1.190 24 H 0.079 0.921 25 H 0.061 0.939 26 H 0.145 0.855 27 H 0.166 0.834 28 H 0.156 0.844 29 H 0.166 0.834 30 H 0.164 0.836 31 H 0.159 0.841 32 H 0.173 0.827 33 H 0.246 0.754 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.025 0.975 37 H 0.028 0.972 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.857 -6.234 22.335 24.181 hybrid contribution -0.633 0.348 -1.206 1.406 sum 6.224 -5.886 21.128 22.799 Atomic orbital electron populations 1.23410 0.77738 1.05463 1.01494 1.86002 1.21269 1.23981 1.92516 1.20667 1.03563 0.87446 0.93583 1.22602 0.95886 0.98504 0.88820 1.19006 1.02250 0.93573 0.94533 1.21630 0.97155 1.00935 0.92536 1.21397 1.00733 0.93497 0.99550 1.21703 0.96809 0.96428 0.97864 1.21484 0.99695 1.00572 0.93852 1.22584 0.96979 0.92499 1.00867 1.19207 0.78702 0.86560 0.83827 1.90765 1.49282 1.23768 1.82173 1.46296 1.50765 1.21708 1.17427 1.21336 0.99485 0.92713 0.85054 1.19131 0.94043 0.95675 0.92550 1.21450 1.31602 1.03385 1.02152 0.92199 1.25879 0.94833 0.96842 1.01592 1.70060 1.33309 1.21277 1.31901 0.85429 0.77693 0.79130 0.78705 1.19791 1.20431 1.19025 0.92068 0.93938 0.85532 0.83391 0.84383 0.83449 0.83560 0.84117 0.82668 0.75366 0.92905 0.93265 0.97493 0.97157 0.92479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.25 10.63 113.37 1.20 1.45 16 2 O -0.32 -7.91 6.03 -92.85 -0.56 -8.47 16 3 C -0.01 -0.18 5.94 23.82 0.14 -0.04 16 4 C -0.04 -0.98 9.46 23.89 0.23 -0.76 16 5 C -0.09 -2.10 5.86 -20.16 -0.12 -2.22 16 6 C -0.10 -1.90 9.80 22.57 0.22 -1.68 16 7 C -0.13 -1.97 10.03 22.23 0.22 -1.74 16 8 C -0.11 -1.56 10.04 22.35 0.22 -1.34 16 9 C -0.14 -2.31 10.03 22.22 0.22 -2.09 16 10 C -0.11 -2.38 9.06 22.58 0.20 -2.18 16 11 C 0.53 19.24 7.60 86.52 0.66 19.90 16 12 O -0.58 -24.63 16.26 -4.23 -0.07 -24.70 16 13 N -0.71 -26.38 5.04 -466.82 -2.35 -28.74 16 14 C 0.14 6.06 5.61 86.38 0.48 6.54 16 15 C 0.02 1.19 5.09 29.85 0.15 1.35 16 16 C -0.55 -30.70 9.11 25.60 0.23 -30.47 16 17 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 18 C 0.01 0.42 5.46 84.65 0.46 0.88 16 19 N -0.93 -54.25 13.29 21.45 0.28 -53.97 16 20 Si 0.97 43.61 29.54 68.60 2.03 45.63 16 21 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 22 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 23 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 24 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.04 0.97 5.89 -2.39 -0.01 0.96 16 26 H 0.13 1.82 8.14 -2.38 -0.02 1.80 16 27 H 0.15 3.77 7.56 -2.91 -0.02 3.75 16 28 H 0.14 2.03 8.06 -2.91 -0.02 2.00 16 29 H 0.15 1.36 8.06 -2.91 -0.02 1.33 16 30 H 0.15 1.25 8.06 -2.91 -0.02 1.22 16 31 H 0.14 1.74 8.06 -2.91 -0.02 1.71 16 32 H 0.16 3.44 4.70 -27.86 -0.13 3.30 16 33 H 0.41 13.56 6.01 -92.71 -0.56 13.00 16 34 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.05 2.25 8.14 -2.39 -0.02 2.24 16 36 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.27 14.63 8.31 -92.70 -0.77 13.86 16 Total: -1.00 -67.81 326.48 4.26 -63.55 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: 0.39 Total: 19.07 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: 4.54 Total: -12.39 kcal Atomic # 7 Polarization: -80.64 SS G_CDS: -2.07 Total: -82.70 kcal Atomic # 8 Polarization: -32.54 SS G_CDS: -0.63 Total: -33.16 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Total: -67.81 4.26 -63.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857178644.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.795 kcal (2) G-P(sol) polarization free energy of solvation -67.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds