Wall clock time and date at job start Mon Mar 30 2020 01:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99603 * 2 1 4 4 H 1.48501 * 109.46944 * 239.99804 * 3 2 1 5 5 H 1.48500 * 109.47029 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46833 * 120.00080 * 3 2 1 7 7 C 1.37876 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99863 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00009 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.46901 * 180.02562 * 9 7 2 11 11 C 1.46902 * 110.99794 * 189.99955 * 10 9 7 12 12 C 1.50697 * 109.47249 * 75.82430 * 11 10 9 13 13 C 1.38670 * 120.42410 * 84.43171 * 12 11 10 14 14 C 1.38626 * 118.42309 * 179.97438 * 13 12 11 15 15 C 1.38222 * 119.16335 * 0.25455 * 14 13 12 16 16 N 1.31863 * 120.76088 * 359.49906 * 15 14 13 17 17 C 1.31886 * 121.72463 * 0.49330 * 16 15 14 18 18 C 1.46901 * 111.00201 * 66.04376 * 10 9 7 19 19 N 1.46499 * 109.47416 * 209.10133 * 18 10 9 20 20 C 1.46352 * 134.66779 * 84.82034 * 19 18 10 21 21 C 1.52879 * 90.57806 * 179.97438 * 20 19 18 22 22 C 1.34606 * 134.66766 * 264.46501 * 19 18 10 23 23 O 1.21283 * 131.84350 * 0.02562 * 22 19 18 24 24 H 0.96994 * 120.00016 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47299 * 60.00112 * 9 7 2 26 26 H 1.09000 * 109.46874 * 299.99714 * 9 7 2 27 27 H 1.08995 * 109.47040 * 315.81945 * 11 10 9 28 28 H 1.09007 * 109.46794 * 195.81772 * 11 10 9 29 29 H 1.08008 * 120.78623 * 359.95880 * 13 12 11 30 30 H 1.08005 * 120.41710 * 179.97438 * 14 13 12 31 31 H 1.07996 * 119.62192 * 179.74853 * 15 14 13 32 32 H 1.07999 * 119.61555 * 179.75313 * 17 16 15 33 33 H 1.08999 * 109.47135 * 329.10568 * 18 10 9 34 34 H 1.09005 * 109.47061 * 89.10375 * 18 10 9 35 35 H 1.09001 * 113.05346 * 295.43966 * 20 19 18 36 36 H 1.09004 * 113.04863 * 64.52530 * 20 19 18 37 37 H 1.09001 * 114.38159 * 113.39189 * 21 20 19 38 38 H 1.08995 * 114.38291 * 246.57177 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2058 -3.6156 0.0018 11 6 1.5215 -4.8936 -0.2363 12 6 1.1660 -5.0086 -1.6962 13 6 2.0961 -5.4797 -2.6105 14 6 1.7247 -5.5691 -3.9431 15 6 0.4504 -5.1835 -4.3145 16 7 -0.4099 -4.7445 -3.4167 17 6 -0.0913 -4.6465 -2.1407 18 6 2.9702 -3.6533 1.2557 19 7 4.2901 -4.2376 1.0056 20 6 5.5743 -3.7155 0.5365 21 6 6.1988 -5.1063 0.6497 22 6 4.8158 -5.4716 1.1196 23 8 4.3357 -6.5253 1.4803 24 1 -0.4850 0.8400 0.0004 25 1 0.6248 -2.5571 -0.8896 26 1 0.6242 -2.5567 0.8903 27 1 0.6125 -4.9362 0.3635 28 1 2.1803 -5.7159 0.0431 29 1 3.0866 -5.7698 -2.2919 30 1 2.4238 -5.9312 -4.6825 31 1 0.1546 -5.2462 -5.3512 32 1 -0.8215 -4.2787 -1.4350 33 1 3.0882 -2.6401 1.6399 34 1 2.4372 -4.2598 1.9880 35 1 5.5364 -3.3467 -0.4885 36 1 6.0168 -2.9921 1.2214 37 1 6.4852 -5.5499 -0.3039 38 1 6.9689 -5.1928 1.4161 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857229464.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:59 Heat of formation + Delta-G solvation = 45.947204 kcal Electronic energy + Delta-G solvation = -21268.450518 eV Core-core repulsion = 18112.428826 eV Total energy + Delta-G solvation = -3156.021692 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.50756 -39.78208 -36.82638 -36.01264 -32.92237 -32.19686 -31.37814 -29.65784 -27.42473 -25.56935 -24.09145 -23.77371 -23.17795 -21.97671 -20.36526 -18.26821 -16.81821 -16.69737 -16.48798 -16.36977 -16.17349 -15.83752 -15.06386 -14.66620 -14.41625 -13.77031 -13.33561 -13.24334 -12.90128 -12.70382 -12.54169 -12.38388 -11.95074 -11.84906 -11.74446 -11.47093 -11.22515 -11.03652 -10.80705 -10.75244 -10.11521 -9.67548 -9.49144 -9.33066 -9.09118 -8.70343 -8.55802 -8.48548 -7.53613 -6.13907 -4.16970 1.46598 1.66069 2.71745 3.24603 3.30428 3.30755 3.32167 4.06363 4.12869 4.33470 4.76734 4.79691 4.96141 5.07369 5.10951 5.21310 5.24101 5.32692 5.41889 5.46631 5.57049 5.72067 5.72527 5.88112 5.98418 6.08767 6.12015 6.15747 6.41885 6.64492 6.71965 6.96269 7.05741 7.14144 7.19139 7.64238 7.87182 7.99818 8.32770 8.33847 8.46833 8.89091 9.47869 10.96434 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.010156 B = 0.008159 C = 0.005146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2756.216295 B = 3430.771751 C = 5440.189673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.516 4.516 8 H 0.062 0.938 9 C 0.196 3.804 10 N -0.546 5.546 11 C 0.094 3.906 12 C -0.108 4.108 13 C -0.056 4.056 14 C -0.180 4.180 15 C 0.086 3.914 16 N -0.487 5.487 17 C 0.113 3.887 18 C 0.303 3.697 19 N -0.611 5.611 20 C 0.101 3.899 21 C -0.177 4.177 22 C 0.510 3.490 23 O -0.536 6.536 24 H 0.264 0.736 25 H 0.040 0.960 26 H -0.005 1.005 27 H 0.042 0.958 28 H 0.073 0.927 29 H 0.126 0.874 30 H 0.128 0.872 31 H 0.149 0.851 32 H 0.153 0.847 33 H 0.111 0.889 34 H 0.052 0.948 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.114 0.886 38 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.949 -8.793 -2.275 12.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.555 4.555 8 H 0.080 0.920 9 C 0.071 3.929 10 N -0.272 5.272 11 C -0.035 4.035 12 C -0.110 4.110 13 C -0.083 4.083 14 C -0.199 4.199 15 C -0.071 4.071 16 N -0.195 5.195 17 C -0.044 4.044 18 C 0.094 3.906 19 N -0.347 5.347 20 C -0.023 4.023 21 C -0.217 4.217 22 C 0.296 3.704 23 O -0.412 6.412 24 H 0.073 0.927 25 H 0.058 0.942 26 H 0.013 0.987 27 H 0.060 0.940 28 H 0.091 0.909 29 H 0.144 0.856 30 H 0.146 0.854 31 H 0.166 0.834 32 H 0.170 0.830 33 H 0.128 0.872 34 H 0.070 0.930 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.133 0.867 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 7.755 -8.779 -2.672 12.015 hybrid contribution 0.699 0.804 0.715 1.283 sum 8.454 -7.975 -1.958 11.785 Atomic orbital electron populations 1.69929 1.06035 1.27150 1.49938 1.24971 0.94853 0.99286 0.95152 0.86574 0.79495 0.82821 0.78597 1.20196 1.21264 1.20239 1.21035 0.93287 0.89811 1.51325 0.92026 1.19783 0.89844 0.86506 0.96757 1.61790 1.28325 1.02851 1.34253 1.20974 0.97829 0.93630 0.91041 1.20780 0.94701 0.98457 0.97086 1.21338 0.98795 0.95524 0.92612 1.22030 0.98117 1.03054 0.96736 1.22635 0.90196 0.95351 0.98925 1.67666 1.36186 1.13173 1.02484 1.22704 0.95028 0.94431 0.92212 1.21784 0.79476 0.99194 0.90135 1.50386 1.10375 1.09795 1.64165 1.22469 0.82013 0.96157 1.01630 1.23447 0.97051 0.97025 1.04208 1.22136 0.88206 0.83249 0.76805 1.90671 1.73307 1.28003 1.49186 0.92652 0.94236 0.98719 0.94002 0.90855 0.85571 0.85397 0.83410 0.83010 0.87151 0.93003 0.89577 0.90088 0.86739 0.86926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.43 13.29 55.43 0.74 -24.69 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.52 -13.46 8.14 -34.44 -0.28 -13.74 16 8 H 0.06 1.57 7.46 -52.49 -0.39 1.18 16 9 C 0.20 4.72 4.52 -4.98 -0.02 4.69 16 10 N -0.55 -10.92 4.51 -241.43 -1.09 -12.01 16 11 C 0.09 1.70 4.99 -4.98 -0.02 1.68 16 12 C -0.11 -1.92 5.05 -104.48 -0.53 -2.44 16 13 C -0.06 -0.89 9.88 -39.28 -0.39 -1.28 16 14 C -0.18 -2.53 10.11 -39.44 -0.40 -2.93 16 15 C 0.09 1.31 11.18 -17.54 -0.20 1.11 16 16 N -0.49 -8.86 10.36 -13.25 -0.14 -8.99 16 17 C 0.11 2.10 9.59 -17.55 -0.17 1.93 16 18 C 0.30 5.51 6.38 -63.32 -0.40 5.10 16 19 N -0.61 -9.54 3.68 -204.13 -0.75 -10.29 16 20 C 0.10 1.18 8.83 -16.47 -0.15 1.04 16 21 C -0.18 -1.77 8.56 -28.01 -0.24 -2.01 16 22 C 0.51 7.84 9.06 -23.41 -0.21 7.63 16 23 O -0.54 -10.22 18.00 5.55 0.10 -10.12 16 24 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 25 H 0.04 1.04 6.35 -51.93 -0.33 0.71 16 26 H 0.00 -0.13 8.12 -51.93 -0.42 -0.55 16 27 H 0.04 0.75 7.91 -51.93 -0.41 0.34 16 28 H 0.07 1.33 7.71 -51.93 -0.40 0.93 16 29 H 0.13 1.84 8.06 -52.48 -0.42 1.42 16 30 H 0.13 1.38 8.06 -52.48 -0.42 0.95 16 31 H 0.15 1.75 8.06 -52.49 -0.42 1.33 16 32 H 0.15 2.78 7.99 -52.49 -0.42 2.36 16 33 H 0.11 2.12 6.62 -51.93 -0.34 1.78 16 34 H 0.05 0.93 7.86 -51.93 -0.41 0.52 16 35 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 327.54 15.07 4.94 4.94 Total: -1.00 -31.82 327.54 -9.55 -41.37 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -5.22 Total: 1.82 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: -3.11 Total: 2.31 kcal Atomic # 7 Polarization: -54.75 SS G_CDS: -1.24 Total: -55.99 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.10 Total: -10.12 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.82 -9.55 -41.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857229464.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.315 kcal (2) G-P(sol) polarization free energy of solvation -31.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds