Wall clock time and date at job start Mon Mar 30 2020 01:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99603 * 2 1 4 4 H 1.48501 * 109.46944 * 239.99804 * 3 2 1 5 5 H 1.48500 * 109.47029 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46833 * 120.00080 * 3 2 1 7 7 C 1.37876 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99863 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00009 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.46901 * 180.02562 * 9 7 2 11 11 C 1.46902 * 110.99794 * 189.99955 * 10 9 7 12 12 C 1.50697 * 109.47249 * 75.82430 * 11 10 9 13 13 C 1.38670 * 120.42410 * 84.43171 * 12 11 10 14 14 C 1.38626 * 118.42309 * 179.97438 * 13 12 11 15 15 C 1.38222 * 119.16335 * 0.25455 * 14 13 12 16 16 N 1.31863 * 120.76088 * 359.49906 * 15 14 13 17 17 C 1.31886 * 121.72463 * 0.49330 * 16 15 14 18 18 C 1.46901 * 111.00201 * 66.04376 * 10 9 7 19 19 N 1.46499 * 109.47416 * 209.10133 * 18 10 9 20 20 C 1.46352 * 134.66779 * 84.82034 * 19 18 10 21 21 C 1.52879 * 90.57806 * 179.97438 * 20 19 18 22 22 C 1.34606 * 134.66766 * 264.46501 * 19 18 10 23 23 O 1.21283 * 131.84350 * 0.02562 * 22 19 18 24 24 H 0.96994 * 120.00016 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47299 * 60.00112 * 9 7 2 26 26 H 1.09000 * 109.46874 * 299.99714 * 9 7 2 27 27 H 1.08995 * 109.47040 * 315.81945 * 11 10 9 28 28 H 1.09007 * 109.46794 * 195.81772 * 11 10 9 29 29 H 1.08008 * 120.78623 * 359.95880 * 13 12 11 30 30 H 1.08005 * 120.41710 * 179.97438 * 14 13 12 31 31 H 1.07996 * 119.62192 * 179.74853 * 15 14 13 32 32 H 1.07999 * 119.61555 * 179.75313 * 17 16 15 33 33 H 1.08999 * 109.47135 * 329.10568 * 18 10 9 34 34 H 1.09005 * 109.47061 * 89.10375 * 18 10 9 35 35 H 1.09001 * 113.05346 * 295.43966 * 20 19 18 36 36 H 1.09004 * 113.04863 * 64.52530 * 20 19 18 37 37 H 1.09001 * 114.38159 * 113.39189 * 21 20 19 38 38 H 1.08995 * 114.38291 * 246.57177 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2058 -3.6156 0.0018 11 6 1.5215 -4.8936 -0.2363 12 6 1.1660 -5.0086 -1.6962 13 6 2.0961 -5.4797 -2.6105 14 6 1.7247 -5.5691 -3.9431 15 6 0.4504 -5.1835 -4.3145 16 7 -0.4099 -4.7445 -3.4167 17 6 -0.0913 -4.6465 -2.1407 18 6 2.9702 -3.6533 1.2557 19 7 4.2901 -4.2376 1.0056 20 6 5.5743 -3.7155 0.5365 21 6 6.1988 -5.1063 0.6497 22 6 4.8158 -5.4716 1.1196 23 8 4.3357 -6.5253 1.4803 24 1 -0.4850 0.8400 0.0004 25 1 0.6248 -2.5571 -0.8896 26 1 0.6242 -2.5567 0.8903 27 1 0.6125 -4.9362 0.3635 28 1 2.1803 -5.7159 0.0431 29 1 3.0866 -5.7698 -2.2919 30 1 2.4238 -5.9312 -4.6825 31 1 0.1546 -5.2462 -5.3512 32 1 -0.8215 -4.2787 -1.4350 33 1 3.0882 -2.6401 1.6399 34 1 2.4372 -4.2598 1.9880 35 1 5.5364 -3.3467 -0.4885 36 1 6.0168 -2.9921 1.2214 37 1 6.4852 -5.5499 -0.3039 38 1 6.9689 -5.1928 1.4161 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000857229464.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:58 Heat of formation + Delta-G solvation = 24.114194 kcal Electronic energy + Delta-G solvation = -21269.397268 eV Core-core repulsion = 18112.428826 eV Total energy + Delta-G solvation = -3156.968442 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.67046 -41.07310 -38.38973 -37.30279 -34.83965 -33.63975 -32.64392 -31.01886 -29.18737 -26.95963 -25.54489 -25.01830 -24.46934 -23.47919 -21.92895 -19.46048 -18.62695 -18.01559 -17.72409 -17.63247 -17.42033 -17.21468 -16.66276 -16.19949 -15.89785 -15.30626 -14.77717 -14.58347 -14.13834 -14.07661 -13.94862 -13.90074 -13.62799 -13.19328 -13.05233 -12.67951 -12.61815 -12.55195 -12.46342 -12.35506 -12.00657 -11.36349 -10.93494 -10.70750 -10.62358 -10.39683 -10.00558 -9.78102 -9.20975 -8.20553 -6.30832 0.18403 0.38270 1.41929 1.44427 1.51751 1.53460 2.09911 2.39638 2.82559 3.05536 3.13326 3.38406 3.55397 3.81540 3.86250 3.93724 4.05906 4.10399 4.14917 4.31650 4.44166 4.47619 4.55993 4.73334 4.74731 4.85418 4.92036 5.08496 5.12269 5.18594 5.20702 5.38302 5.53444 5.70211 5.80233 5.83857 6.00952 6.19628 6.45293 6.83095 7.04125 7.24638 7.38973 8.90064 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.010156 B = 0.008159 C = 0.005146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2756.216295 B = 3430.771751 C = 5440.189673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.966 3.034 4 H -0.270 1.270 5 H -0.289 1.289 6 H -0.262 1.262 7 C -0.521 4.521 8 H 0.068 0.932 9 C 0.214 3.786 10 N -0.542 5.542 11 C 0.104 3.896 12 C -0.125 4.125 13 C -0.061 4.061 14 C -0.163 4.163 15 C 0.081 3.919 16 N -0.514 5.514 17 C 0.090 3.910 18 C 0.307 3.693 19 N -0.623 5.623 20 C 0.096 3.904 21 C -0.139 4.139 22 C 0.495 3.505 23 O -0.582 6.582 24 H 0.263 0.737 25 H 0.013 0.987 26 H -0.033 1.033 27 H 0.032 0.968 28 H 0.075 0.925 29 H 0.142 0.858 30 H 0.173 0.827 31 H 0.185 0.815 32 H 0.134 0.866 33 H 0.097 0.903 34 H 0.044 0.956 35 H 0.086 0.914 36 H 0.101 0.899 37 H 0.141 0.859 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.339 -8.932 -3.775 15.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.194 4.194 3 Si 0.791 3.209 4 H -0.195 1.195 5 H -0.215 1.215 6 H -0.187 1.187 7 C -0.560 4.560 8 H 0.086 0.914 9 C 0.088 3.912 10 N -0.269 5.269 11 C -0.025 4.025 12 C -0.128 4.128 13 C -0.088 4.088 14 C -0.183 4.183 15 C -0.076 4.076 16 N -0.223 5.223 17 C -0.066 4.066 18 C 0.097 3.903 19 N -0.359 5.359 20 C -0.025 4.025 21 C -0.179 4.179 22 C 0.284 3.716 23 O -0.461 6.461 24 H 0.072 0.928 25 H 0.031 0.969 26 H -0.016 1.016 27 H 0.050 0.950 28 H 0.093 0.907 29 H 0.159 0.841 30 H 0.190 0.810 31 H 0.202 0.798 32 H 0.152 0.848 33 H 0.115 0.885 34 H 0.062 0.938 35 H 0.104 0.896 36 H 0.119 0.881 37 H 0.159 0.841 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 11.195 -8.923 -4.165 14.909 hybrid contribution -0.347 0.760 1.132 1.407 sum 10.848 -8.162 -3.033 13.910 Atomic orbital electron populations 1.70080 1.07794 1.27927 1.51345 1.25873 0.95609 1.03081 0.94804 0.85486 0.78167 0.78078 0.79201 1.19469 1.21501 1.18712 1.21350 0.93652 0.90537 1.50426 0.91372 1.19365 0.89830 0.87848 0.94123 1.61766 1.27345 1.02471 1.35272 1.20867 0.97182 0.92619 0.91822 1.20755 0.95120 0.99903 0.96999 1.21606 0.98931 0.95025 0.93226 1.22470 0.98227 1.00910 0.96657 1.23332 0.90373 0.93988 0.99929 1.67639 1.37760 1.14332 1.02554 1.22536 0.95385 0.96017 0.92669 1.21526 0.81008 0.98583 0.89197 1.50553 1.10223 1.10861 1.64273 1.22739 0.79953 0.97826 1.02004 1.23496 0.93994 0.94383 1.06004 1.23284 0.90369 0.82179 0.75802 1.90644 1.74799 1.29588 1.51059 0.92788 0.96897 1.01576 0.95004 0.90666 0.84055 0.80967 0.79837 0.84820 0.88494 0.93807 0.89559 0.88127 0.84070 0.83667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.80 13.29 21.45 0.28 -54.52 16 2 C 0.01 0.27 5.46 84.65 0.46 0.74 16 3 Si 0.97 42.40 29.54 68.60 2.03 44.42 16 4 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 5 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 7 C -0.52 -27.68 8.14 25.60 0.21 -27.47 16 8 H 0.07 3.46 7.46 -2.91 -0.02 3.44 16 9 C 0.21 10.87 4.52 85.56 0.39 11.26 16 10 N -0.54 -22.44 4.51 -917.75 -4.14 -26.58 16 11 C 0.10 3.94 4.99 85.56 0.43 4.37 16 12 C -0.13 -4.57 5.05 -19.77 -0.10 -4.67 16 13 C -0.06 -1.86 9.88 22.47 0.22 -1.63 16 14 C -0.16 -4.11 10.11 22.36 0.23 -3.88 16 15 C 0.08 2.29 11.18 84.68 0.95 3.24 16 16 N -0.51 -18.91 10.36 -195.84 -2.03 -20.94 16 17 C 0.09 3.53 9.59 84.67 0.81 4.34 16 18 C 0.31 11.46 6.38 170.81 1.09 12.55 16 19 N -0.62 -18.86 3.68 -918.21 -3.38 -22.24 16 20 C 0.10 1.97 8.83 78.41 0.69 2.66 16 21 C -0.14 -2.19 8.56 29.77 0.25 -1.94 16 22 C 0.50 14.43 9.06 79.69 0.72 15.15 16 23 O -0.58 -21.99 18.00 -3.04 -0.05 -22.05 16 24 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 25 H 0.01 0.73 6.35 -2.39 -0.02 0.71 16 26 H -0.03 -1.85 8.12 -2.39 -0.02 -1.87 16 27 H 0.03 1.25 7.91 -2.39 -0.02 1.23 16 28 H 0.07 2.81 7.71 -2.38 -0.02 2.80 16 29 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 30 H 0.17 2.79 8.06 -2.91 -0.02 2.77 16 31 H 0.18 3.73 8.06 -2.91 -0.02 3.71 16 32 H 0.13 5.46 7.99 -2.91 -0.02 5.44 16 33 H 0.10 3.84 6.62 -2.39 -0.02 3.82 16 34 H 0.04 1.67 7.86 -2.38 -0.02 1.65 16 35 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 37 H 0.14 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.15 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -72.32 327.54 0.11 -72.20 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: 1.05 Total: 14.99 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: 6.35 Total: 14.71 kcal Atomic # 7 Polarization: -115.01 SS G_CDS: -9.26 Total: -124.27 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.05 Total: -22.05 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.42 kcal Total: -72.32 0.11 -72.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857229464.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.318 kcal (2) G-P(sol) polarization free energy of solvation -72.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds