Wall clock time and date at job start Mon Mar 30 2020 01:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42896 * 114.00105 * 2 1 4 4 H 1.09003 * 110.91708 * 333.90924 * 3 2 1 5 5 C 1.55150 * 111.00751 * 210.00178 * 3 2 1 6 6 C 1.54318 * 102.94711 * 206.42491 * 5 3 2 7 7 N 1.47027 * 107.27111 * 22.19435 * 6 5 3 8 8 C 1.34769 * 125.65254 * 181.02643 * 7 6 5 9 9 O 1.21605 * 120.00496 * 174.88779 * 8 7 6 10 10 C 1.47439 * 120.00045 * 354.87903 * 8 7 6 11 11 C 1.39226 * 120.27987 * 312.59150 * 10 8 7 12 12 C 1.38220 * 120.09070 * 180.02562 * 11 10 8 13 13 C 1.38830 * 120.67486 * 0.02562 * 12 11 10 14 14 C 1.37603 * 120.57210 * 359.69593 * 13 12 11 15 15 C 1.40704 * 119.87667 * 0.57554 * 14 13 12 16 16 C 1.40894 * 120.32826 * 179.72357 * 15 14 13 17 17 H 1.07999 * 120.00005 * 149.17384 * 16 15 14 18 18 C 1.40278 * 119.99654 * 329.17398 * 16 15 14 19 19 N 1.30626 * 120.00063 * 349.09469 * 18 16 15 20 20 Si 1.86797 * 119.99634 * 169.09414 * 18 16 15 21 21 H 1.48493 * 109.47194 * 269.99838 * 20 18 16 22 22 H 1.48503 * 109.46964 * 30.00469 * 20 18 16 23 23 H 1.48505 * 109.46754 * 149.99639 * 20 18 16 24 24 C 1.47425 * 108.69884 * 1.28695 * 7 6 5 25 25 H 1.09000 * 109.46849 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47062 * 299.99543 * 1 2 3 27 27 H 1.08994 * 109.47543 * 59.99627 * 1 2 3 28 28 H 1.09002 * 110.71881 * 88.06046 * 5 3 2 29 29 H 1.08999 * 110.72385 * 324.79001 * 5 3 2 30 30 H 1.09006 * 109.88325 * 262.77922 * 6 5 3 31 31 H 1.09000 * 110.01469 * 141.68522 * 6 5 3 32 32 H 1.08000 * 119.95707 * 0.02562 * 11 10 8 33 33 H 1.08004 * 119.66386 * 179.97438 * 12 11 10 34 34 H 1.07999 * 119.71581 * 179.97438 * 13 12 11 35 35 H 1.07995 * 120.06340 * 180.29786 * 14 13 12 36 36 H 0.97004 * 120.00216 * 180.02562 * 19 18 16 37 37 H 1.09000 * 110.36560 * 94.48438 * 24 7 6 38 38 H 1.08999 * 110.36461 * 216.80968 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3332 2.0329 -0.4478 5 6 3.3823 1.3033 -0.7242 6 6 4.1233 2.4854 -0.0646 7 7 3.4910 2.7228 1.2414 8 6 3.8376 3.6855 2.1185 9 8 3.1842 3.8496 3.1309 10 6 5.0090 4.5398 1.8508 11 6 6.2165 3.9713 1.4543 12 6 7.3124 4.7758 1.2048 13 6 7.2258 6.1542 1.3456 14 6 6.0445 6.7456 1.7304 15 6 4.9157 5.9487 1.9961 16 6 3.7030 6.5438 2.3964 17 1 2.7625 6.0828 2.1332 18 6 3.7172 7.7352 3.1368 19 7 4.8389 8.1797 3.6374 20 14 2.1321 8.6858 3.4070 21 1 1.9477 9.6642 2.3053 22 1 0.9860 7.7416 3.4277 23 1 2.2024 9.4072 4.7032 24 6 2.4192 1.7293 1.4352 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 3.2546 1.4763 -1.7928 29 1 3.9119 0.3677 -0.5445 30 1 4.0315 3.3748 -0.6880 31 1 5.1755 2.2362 0.0728 32 1 6.2970 2.9002 1.3415 33 1 8.2459 4.3274 0.8980 34 1 8.0919 6.7681 1.1470 35 1 5.9850 7.8191 1.8327 36 1 4.8487 9.0034 4.1497 37 1 2.7935 0.8717 1.9944 38 1 1.5727 2.1806 1.9526 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000866347978.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:37 Heat of formation + Delta-G solvation = -75.113256 kcal Electronic energy + Delta-G solvation = -21275.932387 eV Core-core repulsion = 18082.368368 eV Total energy + Delta-G solvation = -3193.564018 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.18275 -39.57464 -38.50657 -37.19116 -35.60973 -32.51408 -31.74962 -31.18960 -29.57670 -27.62441 -27.15474 -25.01391 -23.04606 -22.82940 -22.10687 -20.43324 -19.17552 -18.20042 -18.11684 -17.23029 -16.68871 -16.34419 -16.13564 -15.91327 -15.74472 -15.23893 -14.66856 -14.57564 -14.37906 -14.17551 -13.76822 -13.56104 -13.48295 -13.00599 -12.87322 -12.84804 -12.64496 -12.53431 -12.27263 -12.25663 -11.85739 -11.65881 -11.45468 -11.15125 -10.74558 -10.54684 -9.65672 -9.36198 -9.32141 -8.69889 -6.42616 0.61188 0.99962 1.30355 1.43023 1.47422 1.92332 2.13706 2.17024 2.70539 2.84853 3.43130 3.60280 3.65329 3.95450 4.12191 4.25363 4.35664 4.38896 4.46401 4.53832 4.60365 4.65739 4.73533 4.82852 4.84649 4.86608 4.99205 5.06713 5.12133 5.21174 5.32259 5.45201 5.58564 5.84800 5.99033 6.09169 6.16055 6.27503 6.51348 6.65400 6.84439 6.92453 7.40470 8.26846 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.017590 B = 0.005887 C = 0.004665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.447772 B = 4755.272005 C = 6001.083975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.386 6.386 3 C 0.084 3.916 4 H 0.087 0.913 5 C -0.113 4.113 6 C 0.101 3.899 7 N -0.624 5.624 8 C 0.590 3.410 9 O -0.587 6.587 10 C -0.268 4.268 11 C -0.057 4.057 12 C -0.231 4.231 13 C -0.091 4.091 14 C -0.178 4.178 15 C 0.116 3.884 16 C -0.470 4.470 17 H 0.055 0.945 18 C 0.036 3.964 19 N -0.819 5.819 20 Si 0.978 3.022 21 H -0.249 1.249 22 H -0.275 1.275 23 H -0.262 1.262 24 C 0.083 3.917 25 H 0.106 0.894 26 H 0.039 0.961 27 H 0.057 0.943 28 H 0.114 0.886 29 H 0.096 0.904 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.124 0.876 33 H 0.133 0.867 34 H 0.122 0.878 35 H 0.105 0.895 36 H 0.291 0.709 37 H 0.070 0.930 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.519 -10.454 -10.353 15.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.304 6.304 3 C 0.025 3.975 4 H 0.105 0.895 5 C -0.151 4.151 6 C -0.021 4.021 7 N -0.360 5.360 8 C 0.384 3.616 9 O -0.468 6.468 10 C -0.272 4.272 11 C -0.075 4.075 12 C -0.250 4.250 13 C -0.110 4.110 14 C -0.198 4.198 15 C 0.113 3.887 16 C -0.499 4.499 17 H 0.074 0.926 18 C -0.179 4.179 19 N -0.445 5.445 20 Si 0.798 3.202 21 H -0.173 1.173 22 H -0.199 1.199 23 H -0.186 1.186 24 C -0.040 4.040 25 H 0.124 0.876 26 H 0.057 0.943 27 H 0.075 0.925 28 H 0.132 0.868 29 H 0.115 0.885 30 H 0.084 0.916 31 H 0.101 0.899 32 H 0.142 0.858 33 H 0.151 0.849 34 H 0.140 0.860 35 H 0.123 0.877 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.639 -10.300 -9.627 14.561 hybrid contribution -0.891 0.869 0.782 1.470 sum -4.530 -9.430 -8.845 13.700 Atomic orbital electron populations 1.23050 0.79399 1.04243 1.00766 1.87874 1.21519 1.26290 1.94691 1.23227 0.96056 0.85367 0.92849 0.89530 1.22741 0.93162 0.98194 1.00976 1.22265 0.98379 0.98784 0.82715 1.48354 1.36238 1.31739 1.19624 1.18285 0.83875 0.78092 0.81389 1.90653 1.55773 1.70727 1.29665 1.19689 0.94625 0.93273 1.19657 1.20949 0.91820 0.98719 0.96052 1.20769 0.98873 0.93294 1.12066 1.21174 0.96653 0.95527 0.97619 1.21294 0.93949 0.99249 1.05272 1.17742 0.93732 0.90089 0.87154 1.19592 0.93450 1.06359 1.30482 0.92643 1.26697 1.01311 0.96990 0.92916 1.69724 1.29367 1.20269 1.25167 0.85279 0.77427 0.78127 0.79324 1.17276 1.19925 1.18606 1.22670 0.90576 0.91456 0.99293 0.87610 0.94251 0.92475 0.86786 0.88529 0.91556 0.89915 0.85849 0.84912 0.86042 0.87677 0.89826 0.91206 0.92711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 10.85 113.37 1.23 1.58 16 2 O -0.39 -8.60 10.51 -148.98 -1.57 -10.17 16 3 C 0.08 2.00 3.56 32.06 0.11 2.11 16 4 H 0.09 1.94 7.83 -2.39 -0.02 1.92 16 5 C -0.11 -2.29 6.68 31.78 0.21 -2.08 16 6 C 0.10 2.83 5.98 86.73 0.52 3.34 16 7 N -0.62 -23.69 3.32 -815.19 -2.71 -26.40 16 8 C 0.59 29.33 6.71 86.67 0.58 29.92 16 9 O -0.59 -34.31 15.97 -4.05 -0.06 -34.38 16 10 C -0.27 -13.48 5.38 -19.70 -0.11 -13.59 16 11 C -0.06 -2.38 8.41 22.50 0.19 -2.19 16 12 C -0.23 -9.12 10.03 22.41 0.22 -8.90 16 13 C -0.09 -3.96 10.01 22.26 0.22 -3.74 16 14 C -0.18 -9.23 8.64 22.72 0.20 -9.03 16 15 C 0.12 6.48 5.54 -21.11 -0.12 6.36 16 16 C -0.47 -27.31 7.81 23.42 0.18 -27.13 16 17 H 0.06 3.35 7.06 -2.91 -0.02 3.33 16 18 C 0.04 1.94 5.24 85.37 0.45 2.39 16 19 N -0.82 -44.30 10.99 21.88 0.24 -44.06 16 20 Si 0.98 41.48 29.58 68.60 2.03 43.51 16 21 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 22 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 23 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 24 C 0.08 2.70 6.67 86.93 0.58 3.28 16 25 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.06 0.78 8.12 -2.39 -0.02 0.76 16 28 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 31 H 0.08 2.18 5.90 -2.39 -0.01 2.16 16 32 H 0.12 4.33 6.43 -2.91 -0.02 4.31 16 33 H 0.13 4.19 8.06 -2.91 -0.02 4.16 16 34 H 0.12 4.47 8.06 -2.91 -0.02 4.44 16 35 H 0.11 5.66 6.39 -2.91 -0.02 5.64 16 36 H 0.29 14.12 8.29 -92.71 -0.77 13.36 16 37 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.05 1.97 7.99 -2.39 -0.02 1.95 16 Total: -1.00 -71.20 316.18 3.46 -67.74 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: 1.06 Total: 21.43 kcal Atomic # 6 Polarization: -22.15 SS G_CDS: 4.48 Total: -17.68 kcal Atomic # 7 Polarization: -67.99 SS G_CDS: -2.47 Total: -70.46 kcal Atomic # 8 Polarization: -42.92 SS G_CDS: -1.63 Total: -44.55 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Total: -71.20 3.46 -67.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866347978.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.377 kcal (2) G-P(sol) polarization free energy of solvation -71.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds