Wall clock time and date at job start Mon Mar 30 2020 01:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 119.99864 * 2 1 4 4 H 1.48500 * 109.47046 * 239.99496 * 3 2 1 5 5 H 1.48501 * 109.47421 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47536 * 119.99799 * 3 2 1 7 7 C 1.37882 * 120.00177 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00239 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99607 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.46872 * 179.97438 * 9 7 2 11 11 C 1.34776 * 120.00318 * 179.72803 * 10 9 7 12 12 O 1.21592 * 119.99749 * 0.27166 * 11 10 9 13 13 N 1.34773 * 120.00329 * 180.27529 * 11 10 9 14 14 C 1.39946 * 119.99875 * 175.37572 * 13 11 10 15 15 C 1.38864 * 120.06762 * 214.81342 * 14 13 11 16 16 C 1.38117 * 119.92799 * 179.77210 * 15 14 13 17 17 C 1.38284 * 120.07015 * 0.50862 * 16 15 14 18 18 C 1.50699 * 119.92987 * 179.76645 * 17 16 15 19 19 H 1.08997 * 115.54601 * 154.26046 * 18 17 16 20 20 C 1.52995 * 117.50039 * 8.58839 * 18 17 16 21 21 C 1.52999 * 117.49722 * 299.96323 * 18 17 16 22 22 H 1.08997 * 117.50325 * 0.02562 * 21 18 17 23 23 N 1.46902 * 117.49749 * 214.98234 * 21 18 17 24 24 C 1.38279 * 120.13695 * 359.74998 * 17 16 15 25 25 C 1.38111 * 120.07160 * 359.97438 * 24 17 16 26 26 H 0.96996 * 120.00208 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47310 * 60.00414 * 9 7 2 28 28 H 1.08996 * 109.47700 * 299.99694 * 9 7 2 29 29 H 0.96997 * 119.99867 * 359.97438 * 10 9 7 30 30 H 0.96999 * 119.99595 * 355.38157 * 13 11 10 31 31 H 1.08003 * 120.03668 * 0.02562 * 15 14 13 32 32 H 1.08000 * 119.96866 * 180.25537 * 16 15 14 33 33 H 1.08997 * 117.49930 * 359.97438 * 20 18 17 34 34 H 1.08997 * 117.49839 * 144.99718 * 20 18 17 35 35 H 1.00901 * 111.00261 * 180.02562 * 23 21 18 36 36 H 1.00904 * 111.00113 * 303.95620 * 23 21 18 37 37 H 1.08007 * 119.96625 * 179.97438 * 24 17 16 38 38 H 1.08008 * 120.03504 * 180.02562 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 1.7539 -4.8834 0.0061 12 8 0.5585 -5.1056 0.0061 13 7 2.6297 -5.9077 0.0117 14 6 2.1662 -7.2241 0.1151 15 6 2.9062 -8.1695 0.8129 16 6 2.4436 -9.4667 0.9172 17 6 1.2501 -9.8270 0.3188 18 6 0.7510 -11.2446 0.4301 19 1 -0.3280 -11.3712 0.3424 20 6 1.4978 -12.1840 1.3791 21 6 1.6412 -12.3533 -0.1347 22 1 2.5881 -12.0576 -0.5865 23 7 0.9763 -13.5076 -0.7541 24 6 0.5136 -8.8892 -0.3813 25 6 0.9679 -7.5890 -0.4844 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5571 -0.8897 28 1 0.6241 -2.5568 0.8902 29 1 3.1567 -3.4354 0.0002 30 1 3.5814 -5.7325 -0.0559 31 1 3.8404 -7.8898 1.2771 32 1 3.0165 -10.2015 1.4633 33 1 2.3503 -11.7769 1.9227 34 1 0.9100 -12.9287 1.9158 35 1 1.6524 -14.1762 -1.0915 36 1 0.3299 -13.9403 -0.1115 37 1 -0.4179 -9.1737 -0.8480 38 1 0.3920 -6.8568 -1.0310 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868179996.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:00 Heat of formation + Delta-G solvation = 19.734287 kcal Electronic energy + Delta-G solvation = -19783.299928 eV Core-core repulsion = 16626.141559 eV Total energy + Delta-G solvation = -3157.158369 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.29149 -39.11800 -37.37375 -34.52887 -34.08158 -32.40875 -31.56298 -30.81566 -28.85707 -26.97008 -23.98625 -22.71377 -22.34216 -21.71870 -20.65090 -19.97710 -18.18403 -17.62917 -16.92591 -16.01739 -15.63352 -15.16557 -14.98612 -14.77956 -14.44516 -14.12901 -13.98768 -13.30394 -13.19281 -12.85836 -12.77214 -12.48054 -12.02981 -11.99584 -11.66142 -11.56026 -11.19655 -11.00221 -10.89841 -10.58582 -10.31896 -9.85881 -9.43226 -9.42151 -8.87051 -8.76577 -8.73615 -8.04355 -7.60971 -6.17983 -4.25201 1.39439 1.55212 3.17266 3.24475 3.29790 3.32026 3.45331 3.77606 3.97327 4.11969 4.30494 4.57051 4.68255 4.76336 4.86568 4.93110 5.08364 5.18060 5.21396 5.45632 5.50664 5.59337 5.70486 5.79906 5.94393 6.14869 6.42848 6.51809 6.68756 6.72632 6.78841 6.99703 7.05029 7.27137 7.39820 7.48783 7.51140 7.81821 7.97761 8.67609 8.82634 9.18983 9.41950 10.92124 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.063647 B = 0.002655 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.821834 B =10543.514242 C =10787.418398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.266 3.734 10 N -0.722 5.722 11 C 0.690 3.310 12 O -0.582 6.582 13 N -0.697 5.697 14 C 0.177 3.823 15 C -0.153 4.153 16 C -0.104 4.104 17 C -0.081 4.081 18 C -0.097 4.097 19 H 0.111 0.889 20 C -0.217 4.217 21 C 0.042 3.958 22 H 0.120 0.880 23 N -0.817 5.817 24 C -0.090 4.090 25 C -0.118 4.118 26 H 0.267 0.733 27 H 0.027 0.973 28 H 0.027 0.973 29 H 0.388 0.612 30 H 0.402 0.598 31 H 0.122 0.878 32 H 0.121 0.879 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.347 0.653 36 H 0.343 0.657 37 H 0.123 0.877 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.186 -23.415 1.018 24.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.583 4.583 8 H 0.081 0.919 9 C 0.145 3.855 10 N -0.374 5.374 11 C 0.390 3.610 12 O -0.460 6.460 13 N -0.344 5.344 14 C 0.081 3.919 15 C -0.174 4.174 16 C -0.122 4.122 17 C -0.082 4.082 18 C -0.116 4.116 19 H 0.129 0.871 20 C -0.257 4.257 21 C -0.070 4.070 22 H 0.137 0.863 23 N -0.345 5.345 24 C -0.109 4.109 25 C -0.138 4.138 26 H 0.077 0.923 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.221 0.779 30 H 0.237 0.763 31 H 0.140 0.860 32 H 0.139 0.861 33 H 0.118 0.882 34 H 0.112 0.888 35 H 0.160 0.840 36 H 0.156 0.844 37 H 0.141 0.859 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 5.592 -22.815 0.472 23.495 hybrid contribution 1.755 0.668 0.871 2.070 sum 7.347 -22.147 1.343 23.373 Atomic orbital electron populations 1.69964 1.06093 1.27484 1.48630 1.24947 0.94936 0.99434 0.94682 0.86450 0.79388 0.82238 0.78671 1.20066 1.21044 1.20075 1.21167 0.93250 0.90355 1.53532 0.91935 1.19046 0.87713 0.80872 0.97831 1.45781 1.11105 1.04169 1.76335 1.16170 0.85165 0.81047 0.78585 1.90877 1.13935 1.83663 1.57520 1.42816 1.09882 1.03797 1.77939 1.17581 0.95227 0.83179 0.95921 1.20802 1.01658 0.93596 1.01345 1.20678 0.96008 0.95533 0.99992 1.18944 0.95574 0.93298 1.00403 1.21169 0.98415 0.88550 1.03487 0.87057 1.23832 1.03914 1.03647 0.94288 1.22480 0.98353 0.94065 0.92150 0.86267 1.58405 1.21761 1.11743 1.42562 1.20843 0.99495 0.92230 0.98354 1.21424 0.96522 0.96217 0.99652 0.92331 0.95495 0.95513 0.77931 0.76287 0.85989 0.86149 0.88214 0.88772 0.83983 0.84389 0.85945 0.83792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.00 13.29 55.43 0.74 -25.26 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.91 20.76 29.54 -169.99 -5.02 15.74 16 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.54 -14.70 9.28 -34.44 -0.32 -15.01 16 8 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 9 C 0.27 7.05 5.43 -5.19 -0.03 7.02 16 10 N -0.72 -15.23 5.55 -66.41 -0.37 -15.59 16 11 C 0.69 14.20 8.41 -86.92 -0.73 13.47 16 12 O -0.58 -14.25 13.78 5.28 0.07 -14.18 16 13 N -0.70 -10.86 5.34 -14.22 -0.08 -10.94 16 14 C 0.18 2.72 6.30 -83.69 -0.53 2.19 16 15 C -0.15 -1.90 9.97 -39.39 -0.39 -2.29 16 16 C -0.10 -1.17 9.29 -39.61 -0.37 -1.54 16 17 C -0.08 -0.97 5.61 -104.59 -0.59 -1.56 16 18 C -0.10 -0.95 5.97 -91.78 -0.55 -1.49 16 19 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 20 C -0.22 -1.65 9.56 -26.73 -0.26 -1.90 16 21 C 0.04 0.34 6.86 -67.71 -0.46 -0.13 16 22 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16 23 N -0.82 -5.67 9.90 -4.67 -0.05 -5.71 16 24 C -0.09 -1.25 9.73 -39.61 -0.39 -1.63 16 25 C -0.12 -1.92 8.70 -39.40 -0.34 -2.26 16 26 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 27 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.39 6.89 8.34 -40.82 -0.34 6.55 16 30 H 0.40 4.78 8.84 -40.82 -0.36 4.42 16 31 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 32 H 0.12 1.06 6.01 -52.49 -0.32 0.75 16 33 H 0.10 0.72 6.17 -51.93 -0.32 0.40 16 34 H 0.09 0.61 8.09 -51.93 -0.42 0.19 16 35 H 0.35 1.75 9.08 -39.29 -0.36 1.39 16 36 H 0.34 1.92 8.78 -39.29 -0.35 1.58 16 37 H 0.12 1.51 8.06 -52.48 -0.42 1.08 16 38 H 0.14 2.70 6.22 -52.48 -0.33 2.38 16 LS Contribution 325.38 15.07 4.90 4.90 Total: -1.00 -32.80 325.38 -9.70 -42.50 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -4.86 Total: 12.03 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -5.05 Total: -3.48 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: 0.25 Total: -57.51 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: 0.07 Total: -14.18 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.80 -9.70 -42.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868179996.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.232 kcal (2) G-P(sol) polarization free energy of solvation -32.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds