Wall clock time and date at job start Mon Mar 30 2020 02:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86799 * 119.99756 * 2 1 4 4 H 1.48501 * 109.47255 * 239.99788 * 3 2 1 5 5 H 1.48494 * 109.47213 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47210 * 120.00029 * 3 2 1 7 7 C 1.40032 * 120.00471 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00628 * 192.11441 * 7 2 1 9 9 C 1.41549 * 119.99642 * 12.11363 * 7 2 1 10 10 C 1.41164 * 120.99837 * 201.12579 * 9 7 2 11 11 C 1.36586 * 119.12828 * 180.02562 * 10 9 7 12 12 N 1.32063 * 121.26229 * 359.72240 * 11 10 9 13 13 C 1.32498 * 122.22637 * 0.57111 * 12 11 10 14 14 N 1.39463 * 119.64767 * 179.70836 * 13 12 11 15 15 C 1.34777 * 119.99996 * 6.01083 * 14 13 12 16 16 O 1.21574 * 120.00114 * 355.46135 * 15 14 13 17 17 N 1.34775 * 119.99698 * 175.45567 * 15 14 13 18 18 C 1.46499 * 119.99840 * 180.02562 * 17 15 14 19 19 C 1.54967 * 110.92138 * 91.54161 * 18 17 15 20 20 C 1.54272 * 104.16119 * 156.29373 * 19 18 17 21 21 C 1.53875 * 106.63615 * 336.44996 * 20 19 18 22 22 C 1.54262 * 106.60391 * 359.97255 * 21 20 19 23 23 C 1.38642 * 120.70510 * 359.43199 * 13 12 11 24 24 H 0.96995 * 120.00088 * 0.02562 * 1 2 3 25 25 H 1.08006 * 120.43361 * 0.02562 * 10 9 7 26 26 H 1.08003 * 119.36641 * 179.97438 * 11 10 9 27 27 H 0.97001 * 119.99476 * 186.01707 * 14 13 12 28 28 H 0.96999 * 120.00070 * 0.02562 * 17 15 14 29 29 H 1.08998 * 110.67480 * 328.24310 * 18 17 15 30 30 H 1.09002 * 110.47588 * 37.64803 * 19 18 17 31 31 H 1.09000 * 110.53441 * 274.97894 * 19 18 17 32 32 H 1.08994 * 110.03293 * 217.13581 * 20 19 18 33 33 H 1.09006 * 110.02687 * 95.75577 * 20 19 18 34 34 H 1.09006 * 110.02936 * 119.25998 * 21 20 19 35 35 H 1.09005 * 110.02945 * 240.63461 * 21 20 19 36 36 H 1.09002 * 110.48734 * 142.28942 * 22 21 20 37 37 H 1.08999 * 110.48462 * 264.80078 * 22 21 20 38 38 H 1.07995 * 120.66443 * 180.29862 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.0951 1.6965 -1.2125 5 1 1.2763 2.7464 -0.0006 6 1 3.0951 1.6965 1.2125 7 6 2.0077 -1.2127 0.0005 8 1 3.0696 -1.2230 0.1968 9 6 1.3236 -2.4250 -0.2562 10 6 1.8596 -3.6638 0.1571 11 6 1.1674 -4.8103 -0.1111 12 7 0.0080 -4.7792 -0.7426 13 6 -0.5399 -3.6467 -1.1583 14 7 -1.7642 -3.6768 -1.8256 15 6 -2.4418 -4.8363 -1.9384 16 8 -1.9489 -5.8705 -1.5316 17 7 -3.6660 -4.8492 -2.5019 18 6 -4.4029 -6.1095 -2.6240 19 6 -5.3105 -6.3417 -1.3895 20 6 -6.4117 -7.2918 -1.9040 21 6 -6.4816 -7.1001 -3.4291 22 6 -5.4209 -6.0395 -3.7893 23 6 0.0881 -2.4315 -0.9320 24 1 -0.4850 0.8400 -0.0004 25 1 2.8046 -3.7044 0.6784 26 1 1.5742 -5.7603 0.2030 27 1 -2.1278 -2.8632 -2.2086 28 1 -4.0592 -4.0241 -2.8267 29 1 -3.7164 -6.9450 -2.7604 30 1 -5.7453 -5.4003 -1.0535 31 1 -4.7469 -6.8118 -0.5836 32 1 -7.3689 -7.0339 -1.4509 33 1 -6.1536 -8.3244 -1.6688 34 1 -6.2568 -8.0396 -3.9342 35 1 -7.4732 -6.7502 -3.7164 36 1 -4.9374 -6.2890 -4.7338 37 1 -5.8743 -5.0498 -3.8435 38 1 -0.3614 -1.5084 -1.2668 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871719509.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:23 Heat of formation + Delta-G solvation = -23.051567 kcal Electronic energy + Delta-G solvation = -20582.650352 eV Core-core repulsion = 17423.636649 eV Total energy + Delta-G solvation = -3159.013703 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.45143 -40.01531 -38.64115 -36.12195 -35.47993 -34.56364 -32.38762 -30.49417 -29.61064 -28.22249 -27.88109 -23.89076 -23.61085 -21.85559 -21.61905 -21.03775 -19.55601 -19.41095 -17.84308 -17.22842 -16.74730 -16.47200 -16.20567 -16.00921 -15.89535 -15.26607 -14.70213 -14.52112 -14.30235 -14.24521 -14.14819 -13.26089 -13.15227 -12.85205 -12.66809 -12.54069 -12.10674 -12.03766 -12.02090 -11.91302 -11.69049 -11.51444 -11.28256 -11.21937 -11.17030 -10.01740 -9.90886 -9.60862 -8.81625 -8.57454 -6.57291 0.85520 1.03144 1.42187 1.53540 1.60601 1.66346 2.20800 2.28721 2.85285 3.20483 3.64265 3.76186 3.80788 3.99701 4.16837 4.48324 4.49269 4.55654 4.63842 4.73318 4.78606 4.87224 4.93297 4.94424 5.10561 5.11588 5.16752 5.22907 5.28082 5.30116 5.49652 5.52442 5.66636 5.67405 5.87870 6.01837 6.28476 6.58506 6.81108 6.84626 7.03121 7.65086 7.92846 8.27419 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.031173 B = 0.003700 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.007173 B = 7566.000992 C = 8186.970311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.036 3.964 3 Si 0.992 3.008 4 H -0.260 1.260 5 H -0.265 1.265 6 H -0.261 1.261 7 C -0.479 4.479 8 H 0.084 0.916 9 C 0.110 3.890 10 C -0.299 4.299 11 C 0.112 3.888 12 N -0.581 5.581 13 C 0.349 3.651 14 N -0.661 5.661 15 C 0.688 3.312 16 O -0.582 6.582 17 N -0.724 5.724 18 C 0.152 3.848 19 C -0.138 4.138 20 C -0.119 4.119 21 C -0.116 4.116 22 C -0.120 4.120 23 C -0.267 4.267 24 H 0.292 0.708 25 H 0.115 0.885 26 H 0.146 0.854 27 H 0.419 0.581 28 H 0.410 0.590 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.040 0.960 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.944 -2.852 -7.246 15.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.181 4.181 3 Si 0.812 3.188 4 H -0.184 1.184 5 H -0.189 1.189 6 H -0.185 1.185 7 C -0.509 4.509 8 H 0.102 0.898 9 C 0.102 3.898 10 C -0.323 4.323 11 C -0.041 4.041 12 N -0.302 5.302 13 C 0.122 3.878 14 N -0.310 5.310 15 C 0.387 3.613 16 O -0.456 6.456 17 N -0.381 5.381 18 C 0.046 3.954 19 C -0.177 4.177 20 C -0.157 4.157 21 C -0.154 4.154 22 C -0.158 4.158 23 C -0.293 4.293 24 H 0.103 0.897 25 H 0.133 0.867 26 H 0.163 0.837 27 H 0.257 0.743 28 H 0.246 0.754 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.059 0.941 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.107 0.893 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -13.240 -4.491 -7.053 15.660 hybrid contribution 0.735 2.031 0.248 2.174 sum -12.505 -2.460 -6.805 14.448 Atomic orbital electron populations 1.69760 1.08951 1.30846 1.34139 1.26865 0.95698 1.04657 0.90842 0.85104 0.78652 0.75021 0.80049 1.18388 1.18885 1.18542 1.19895 0.96800 0.91124 1.43088 0.89782 1.18023 0.91317 0.93308 0.87144 1.21826 1.04387 0.93897 1.12224 1.21893 0.90041 0.97743 0.94437 1.67328 1.14080 1.28273 1.20472 1.18236 0.86188 0.90325 0.93037 1.42442 1.19529 1.11129 1.57883 1.16329 0.81731 0.83690 0.79517 1.90963 1.69261 1.32070 1.53354 1.45020 1.15721 1.12150 1.65180 1.21941 0.92203 0.84979 0.96239 1.22763 0.97045 1.00424 0.97451 1.22063 0.98247 0.98991 0.96361 1.22065 0.99371 0.98945 0.95050 1.22588 0.95369 1.01277 0.96587 1.21772 1.01155 0.95784 1.10600 0.89675 0.86669 0.83701 0.74325 0.75390 0.91439 0.91041 0.94142 0.90300 0.91858 0.91040 0.89538 0.90538 0.89337 0.84498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.46 10.50 21.84 0.23 -39.24 16 2 C 0.04 1.72 5.31 85.29 0.45 2.17 16 3 Si 0.99 35.72 29.58 68.60 2.03 37.75 16 4 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 5 H -0.26 -8.91 7.11 99.48 0.71 -8.20 16 6 H -0.26 -9.23 7.11 99.48 0.71 -8.52 16 7 C -0.48 -24.92 9.15 23.52 0.22 -24.71 16 8 H 0.08 4.17 7.88 -2.91 -0.02 4.14 16 9 C 0.11 6.01 5.65 -21.11 -0.12 5.89 16 10 C -0.30 -15.28 9.85 22.60 0.22 -15.06 16 11 C 0.11 5.65 11.10 84.27 0.94 6.58 16 12 N -0.58 -31.45 7.86 -194.27 -1.53 -32.98 16 13 C 0.35 17.82 7.42 132.76 0.98 18.80 16 14 N -0.66 -27.08 5.39 -322.37 -1.74 -28.82 16 15 C 0.69 27.67 8.52 179.05 1.53 29.20 16 16 O -0.58 -29.18 14.25 -3.95 -0.06 -29.23 16 17 N -0.72 -20.07 5.19 -451.54 -2.34 -22.42 16 18 C 0.15 3.77 3.26 46.31 0.15 3.92 16 19 C -0.14 -3.25 6.53 31.70 0.21 -3.04 16 20 C -0.12 -1.98 6.80 31.32 0.21 -1.76 16 21 C -0.12 -1.56 6.80 31.32 0.21 -1.34 16 22 C -0.12 -1.90 6.45 31.67 0.20 -1.69 16 23 C -0.27 -14.06 8.67 23.00 0.20 -13.86 16 24 H 0.29 12.66 8.29 -92.71 -0.77 11.89 16 25 H 0.12 5.34 8.06 -2.91 -0.02 5.32 16 26 H 0.15 6.35 8.06 -2.91 -0.02 6.33 16 27 H 0.42 13.78 8.72 -92.71 -0.81 12.97 16 28 H 0.41 8.29 8.59 -92.71 -0.80 7.50 16 29 H 0.07 2.09 7.54 -2.39 -0.02 2.07 16 30 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 34 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 35 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 36 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.09 1.11 8.02 -2.39 -0.02 1.09 16 38 H 0.14 7.10 5.81 -2.91 -0.02 7.08 16 Total: -1.00 -70.40 317.57 1.48 -68.92 By element: Atomic # 1 Polarization: 41.44 SS G_CDS: -0.51 Total: 40.93 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: 5.41 Total: 5.09 kcal Atomic # 7 Polarization: -118.07 SS G_CDS: -5.38 Total: -123.45 kcal Atomic # 8 Polarization: -29.18 SS G_CDS: -0.06 Total: -29.23 kcal Atomic # 14 Polarization: 35.72 SS G_CDS: 2.03 Total: 37.75 kcal Total: -70.40 1.48 -68.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871719509.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.867 kcal (2) G-P(sol) polarization free energy of solvation -70.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds