Wall clock time and date at job start Mon Mar 30 2020 02:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86801 * 119.99996 * 2 1 4 4 H 1.48501 * 109.47093 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46772 * 300.00157 * 3 2 1 6 6 H 1.48496 * 109.46797 * 60.00008 * 3 2 1 7 7 C 1.40027 * 120.00048 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00397 * 198.96826 * 7 2 1 9 9 C 1.41548 * 119.99898 * 18.96741 * 7 2 1 10 10 C 1.41169 * 120.99666 * 198.20191 * 9 7 2 11 11 C 1.36593 * 119.12896 * 180.02562 * 10 9 7 12 12 N 1.32067 * 121.25513 * 359.74099 * 11 10 9 13 13 C 1.32493 * 122.23185 * 0.53669 * 12 11 10 14 14 N 1.39460 * 119.64912 * 179.74411 * 13 12 11 15 15 C 1.34780 * 119.99802 * 354.07304 * 14 13 12 16 16 O 1.21573 * 120.00246 * 4.04829 * 15 14 13 17 17 N 1.34783 * 119.99658 * 184.04030 * 15 14 13 18 18 C 1.46503 * 119.99479 * 180.02562 * 17 15 14 19 19 C 1.53007 * 109.46679 * 180.02562 * 18 17 15 20 20 C 1.53777 * 113.61054 * 274.13585 * 19 18 17 21 21 C 1.53956 * 87.01801 * 220.04839 * 20 19 18 22 22 C 1.53773 * 113.61247 * 176.52964 * 19 18 17 23 23 C 1.38641 * 120.70344 * 359.46758 * 13 12 11 24 24 H 0.96993 * 119.99840 * 0.02562 * 1 2 3 25 25 H 1.07997 * 120.43465 * 0.02562 * 10 9 7 26 26 H 1.07994 * 119.36937 * 179.97438 * 11 10 9 27 27 H 0.96995 * 119.99885 * 173.80048 * 14 13 12 28 28 H 0.97000 * 120.00084 * 0.02562 * 17 15 14 29 29 H 1.09004 * 109.47085 * 300.00172 * 18 17 15 30 30 H 1.08999 * 109.47389 * 60.00456 * 18 17 15 31 31 H 1.09002 * 112.84830 * 45.33134 * 19 18 17 32 32 H 1.09001 * 113.62035 * 334.56804 * 20 19 18 33 33 H 1.09006 * 113.61196 * 105.47428 * 20 19 18 34 34 H 1.09004 * 113.53748 * 270.81609 * 21 20 19 35 35 H 1.09000 * 113.74482 * 139.94592 * 21 20 19 36 36 H 1.09001 * 113.61500 * 254.52830 * 22 19 18 37 37 H 1.09001 * 113.61671 * 25.34917 * 22 19 18 38 38 H 1.07997 * 120.66527 * 180.27537 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.7015 1.3464 -0.0006 5 1 1.8826 2.3964 -1.2125 6 1 1.8827 2.3964 1.2125 7 6 2.0076 -1.2127 0.0005 8 1 3.0436 -1.2380 0.3046 9 6 1.3575 -2.4054 -0.3974 10 6 1.8857 -3.6696 -0.0572 11 6 1.2272 -4.7960 -0.4614 12 7 0.1074 -4.7224 -1.1576 13 6 -0.4311 -3.5642 -1.5095 14 7 -1.6131 -3.5494 -2.2496 15 6 -2.1373 -4.7044 -2.7052 16 8 -1.6212 -5.7647 -2.4095 17 7 -3.2339 -4.6840 -3.4887 18 6 -3.8040 -5.9395 -3.9834 19 6 -5.0332 -5.6376 -4.8432 20 6 -6.3320 -5.4950 -4.0323 21 6 -7.0303 -6.2664 -5.1670 22 6 -5.6596 -6.8878 -5.4829 23 6 0.1648 -2.3666 -1.1450 24 1 -0.4849 0.8400 -0.0004 25 1 2.7984 -3.7451 0.5152 26 1 1.6281 -5.7651 -0.2037 27 1 -2.0599 -2.7083 -2.4331 28 1 -3.6455 -3.8380 -3.7249 29 1 -3.0609 -6.4643 -4.5840 30 1 -4.0954 -6.5640 -3.1389 31 1 -4.8669 -4.8230 -5.5481 32 1 -6.3162 -6.0327 -3.0842 33 1 -6.6720 -4.4644 -3.9300 34 1 -7.4113 -5.6232 -5.9603 35 1 -7.7674 -6.9893 -4.8175 36 1 -5.4574 -6.9800 -6.5500 37 1 -5.4583 -7.8071 -4.9330 38 1 -0.2771 -1.4228 -1.4284 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871719824.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:27 Heat of formation + Delta-G solvation = 23.665667 kcal Electronic energy + Delta-G solvation = -20292.838406 eV Core-core repulsion = 17135.850514 eV Total energy + Delta-G solvation = -3156.987892 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.87243 -38.97340 -37.82462 -34.45975 -33.87563 -33.68476 -30.49165 -29.08621 -27.52281 -25.98706 -25.82412 -23.11757 -21.90286 -21.43449 -20.18764 -19.53145 -17.95923 -17.60945 -16.33755 -15.76707 -15.29381 -15.09116 -14.71332 -14.49257 -14.15268 -14.01268 -13.53986 -13.32509 -12.83370 -12.66467 -12.60347 -12.33061 -12.10339 -11.72574 -11.44558 -11.17171 -10.88454 -10.80225 -10.58529 -10.44799 -10.27089 -10.09481 -9.72282 -9.51496 -9.31098 -8.71117 -7.99932 -7.66074 -6.99101 -6.77746 -4.59638 2.72593 2.82298 3.01059 3.06715 3.11087 3.28089 3.83690 3.93219 4.35953 4.40973 4.48887 4.61976 4.68683 4.78559 5.13427 5.31025 5.48941 5.53831 5.65043 5.67819 5.75337 5.79231 5.86972 6.03621 6.04540 6.26791 6.59567 6.66951 6.80354 6.85625 6.95428 7.17452 7.35165 7.49515 7.53555 7.89152 8.14555 8.45103 8.50577 8.76552 8.77183 9.25541 9.80218 10.03158 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.028138 B = 0.003496 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.865441 B = 8006.581194 C = 8832.930600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.078 3.922 3 Si 0.911 3.089 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.450 4.450 8 H 0.083 0.917 9 C 0.141 3.859 10 C -0.289 4.289 11 C 0.121 3.879 12 N -0.556 5.556 13 C 0.356 3.644 14 N -0.669 5.669 15 C 0.689 3.311 16 O -0.535 6.535 17 N -0.754 5.754 18 C 0.152 3.848 19 C -0.124 4.124 20 C -0.137 4.137 21 C -0.143 4.143 22 C -0.131 4.131 23 C -0.256 4.256 24 H 0.281 0.719 25 H 0.100 0.900 26 H 0.121 0.879 27 H 0.403 0.597 28 H 0.390 0.610 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.478 -3.216 -8.956 14.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.142 4.142 3 Si 0.735 3.265 4 H -0.182 1.182 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.481 4.481 8 H 0.101 0.899 9 C 0.132 3.868 10 C -0.313 4.313 11 C -0.033 4.033 12 N -0.276 5.276 13 C 0.130 3.870 14 N -0.316 5.316 15 C 0.389 3.611 16 O -0.406 6.406 17 N -0.412 5.412 18 C 0.027 3.973 19 C -0.143 4.143 20 C -0.174 4.174 21 C -0.181 4.181 22 C -0.169 4.169 23 C -0.282 4.282 24 H 0.092 0.908 25 H 0.119 0.881 26 H 0.139 0.861 27 H 0.238 0.762 28 H 0.223 0.777 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.113 0.887 32 H 0.102 0.898 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.103 0.897 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.650 -4.905 -8.953 15.490 hybrid contribution 0.293 2.481 0.111 2.501 sum -11.357 -2.423 -8.842 14.595 Atomic orbital electron populations 1.69794 1.07780 1.29217 1.34019 1.25994 0.94732 1.01623 0.91828 0.86220 0.81124 0.80552 0.78627 1.18231 1.19598 1.19880 1.19636 0.98691 0.90983 1.38781 0.89932 1.17563 0.90060 0.92189 0.86953 1.21607 1.04677 0.93733 1.11261 1.21462 0.90828 0.96886 0.94089 1.67214 1.13980 1.26288 1.20083 1.17973 0.85880 0.90835 0.92287 1.42570 1.25344 1.08216 1.55513 1.16123 0.80509 0.84917 0.79559 1.91005 1.61031 1.28550 1.59987 1.45196 1.31010 1.09351 1.55631 1.21110 0.93601 0.85696 0.96863 1.22818 0.93772 0.99423 0.98259 1.23032 0.95724 1.00843 0.97827 1.22842 0.96617 0.99748 0.98860 1.22863 0.95835 0.97322 1.00887 1.21637 1.01887 0.95795 1.08849 0.90801 0.88146 0.86124 0.76230 0.77674 0.91876 0.91798 0.88748 0.89807 0.91459 0.90308 0.91452 0.91304 0.89698 0.84862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.11 10.70 55.55 0.59 -18.51 16 2 C 0.08 1.87 5.21 -17.34 -0.09 1.78 16 3 Si 0.91 17.80 29.60 -169.99 -5.03 12.77 16 4 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 5 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 6 H -0.27 -5.27 7.11 56.52 0.40 -4.86 16 7 C -0.45 -11.63 9.13 -37.65 -0.34 -11.97 16 8 H 0.08 2.05 7.92 -52.49 -0.42 1.63 16 9 C 0.14 3.76 5.66 -106.55 -0.60 3.15 16 10 C -0.29 -7.25 9.85 -39.06 -0.38 -7.64 16 11 C 0.12 3.01 11.10 -18.04 -0.20 2.81 16 12 N -0.56 -14.79 7.86 -12.76 -0.10 -14.89 16 13 C 0.36 8.93 7.42 -154.68 -1.15 7.79 16 14 N -0.67 -13.67 5.40 -15.86 -0.09 -13.76 16 15 C 0.69 13.83 8.53 -86.91 -0.74 13.09 16 16 O -0.53 -13.16 14.60 5.30 0.08 -13.09 16 17 N -0.75 -10.71 5.56 -65.22 -0.36 -11.07 16 18 C 0.15 1.89 5.50 -4.04 -0.02 1.87 16 19 C -0.12 -1.10 3.75 -89.81 -0.34 -1.43 16 20 C -0.14 -1.13 7.65 -25.83 -0.20 -1.33 16 21 C -0.14 -1.03 8.09 -25.83 -0.21 -1.23 16 22 C -0.13 -1.02 7.64 -25.92 -0.20 -1.22 16 23 C -0.26 -6.60 8.69 -38.46 -0.33 -6.94 16 24 H 0.28 6.14 8.29 -40.82 -0.34 5.81 16 25 H 0.10 2.31 8.06 -52.49 -0.42 1.88 16 26 H 0.12 2.63 8.06 -52.49 -0.42 2.21 16 27 H 0.40 6.75 8.71 -40.82 -0.36 6.39 16 28 H 0.39 4.32 8.49 -40.82 -0.35 3.98 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.87 7.88 -51.93 -0.41 0.46 16 31 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.08 0.75 7.92 -51.93 -0.41 0.34 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 38 H 0.13 3.39 5.87 -52.49 -0.31 3.08 16 LS Contribution 321.38 15.07 4.84 4.84 Total: -1.00 -32.12 321.38 -10.06 -42.18 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -5.18 Total: 12.81 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: -4.81 Total: -1.28 kcal Atomic # 7 Polarization: -58.28 SS G_CDS: 0.05 Total: -58.23 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.08 Total: -13.09 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.03 Total: 12.77 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.12 -10.06 -42.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871719824.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.843 kcal (2) G-P(sol) polarization free energy of solvation -32.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds