Wall clock time and date at job start Mon Mar 30 2020 02:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86801 * 119.99996 * 2 1 4 4 H 1.48501 * 109.47093 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46772 * 300.00157 * 3 2 1 6 6 H 1.48496 * 109.46797 * 60.00008 * 3 2 1 7 7 C 1.40027 * 120.00048 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00397 * 198.96826 * 7 2 1 9 9 C 1.41548 * 119.99898 * 18.96741 * 7 2 1 10 10 C 1.41169 * 120.99666 * 198.20191 * 9 7 2 11 11 C 1.36593 * 119.12896 * 180.02562 * 10 9 7 12 12 N 1.32067 * 121.25513 * 359.74099 * 11 10 9 13 13 C 1.32493 * 122.23185 * 0.53669 * 12 11 10 14 14 N 1.39460 * 119.64912 * 179.74411 * 13 12 11 15 15 C 1.34780 * 119.99802 * 354.07304 * 14 13 12 16 16 O 1.21573 * 120.00246 * 4.04829 * 15 14 13 17 17 N 1.34783 * 119.99658 * 184.04030 * 15 14 13 18 18 C 1.46503 * 119.99479 * 180.02562 * 17 15 14 19 19 C 1.53007 * 109.46679 * 180.02562 * 18 17 15 20 20 C 1.53777 * 113.61054 * 274.13585 * 19 18 17 21 21 C 1.53956 * 87.01801 * 220.04839 * 20 19 18 22 22 C 1.53773 * 113.61247 * 176.52964 * 19 18 17 23 23 C 1.38641 * 120.70344 * 359.46758 * 13 12 11 24 24 H 0.96993 * 119.99840 * 0.02562 * 1 2 3 25 25 H 1.07997 * 120.43465 * 0.02562 * 10 9 7 26 26 H 1.07994 * 119.36937 * 179.97438 * 11 10 9 27 27 H 0.96995 * 119.99885 * 173.80048 * 14 13 12 28 28 H 0.97000 * 120.00084 * 0.02562 * 17 15 14 29 29 H 1.09004 * 109.47085 * 300.00172 * 18 17 15 30 30 H 1.08999 * 109.47389 * 60.00456 * 18 17 15 31 31 H 1.09002 * 112.84830 * 45.33134 * 19 18 17 32 32 H 1.09001 * 113.62035 * 334.56804 * 20 19 18 33 33 H 1.09006 * 113.61196 * 105.47428 * 20 19 18 34 34 H 1.09004 * 113.53748 * 270.81609 * 21 20 19 35 35 H 1.09000 * 113.74482 * 139.94592 * 21 20 19 36 36 H 1.09001 * 113.61500 * 254.52830 * 22 19 18 37 37 H 1.09001 * 113.61671 * 25.34917 * 22 19 18 38 38 H 1.07997 * 120.66527 * 180.27537 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.7015 1.3464 -0.0006 5 1 1.8826 2.3964 -1.2125 6 1 1.8827 2.3964 1.2125 7 6 2.0076 -1.2127 0.0005 8 1 3.0436 -1.2380 0.3046 9 6 1.3575 -2.4054 -0.3974 10 6 1.8857 -3.6696 -0.0572 11 6 1.2272 -4.7960 -0.4614 12 7 0.1074 -4.7224 -1.1576 13 6 -0.4311 -3.5642 -1.5095 14 7 -1.6131 -3.5494 -2.2496 15 6 -2.1373 -4.7044 -2.7052 16 8 -1.6212 -5.7647 -2.4095 17 7 -3.2339 -4.6840 -3.4887 18 6 -3.8040 -5.9395 -3.9834 19 6 -5.0332 -5.6376 -4.8432 20 6 -6.3320 -5.4950 -4.0323 21 6 -7.0303 -6.2664 -5.1670 22 6 -5.6596 -6.8878 -5.4829 23 6 0.1648 -2.3666 -1.1450 24 1 -0.4849 0.8400 -0.0004 25 1 2.7984 -3.7451 0.5152 26 1 1.6281 -5.7651 -0.2037 27 1 -2.0599 -2.7083 -2.4331 28 1 -3.6455 -3.8380 -3.7249 29 1 -3.0609 -6.4643 -4.5840 30 1 -4.0954 -6.5640 -3.1389 31 1 -4.8669 -4.8230 -5.5481 32 1 -6.3162 -6.0327 -3.0842 33 1 -6.6720 -4.4644 -3.9300 34 1 -7.4113 -5.6232 -5.9603 35 1 -7.7674 -6.9893 -4.8175 36 1 -5.4574 -6.9800 -6.5500 37 1 -5.4583 -7.8071 -4.9330 38 1 -0.2771 -1.4228 -1.4284 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871719824.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:27 Heat of formation + Delta-G solvation = 3.732387 kcal Electronic energy + Delta-G solvation = -20293.702778 eV Core-core repulsion = 17135.850514 eV Total energy + Delta-G solvation = -3157.852264 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.42094 -40.09684 -39.36802 -36.20543 -35.48861 -35.30198 -32.42141 -30.70553 -28.78371 -27.91135 -26.46420 -24.22679 -23.77201 -22.97487 -21.75185 -20.43608 -19.53774 -19.29232 -17.88085 -17.09569 -16.72833 -16.50737 -16.06104 -15.99699 -15.82160 -15.42193 -14.79383 -14.73751 -14.64712 -14.34142 -14.02345 -13.30879 -13.17348 -12.90385 -12.84805 -12.65778 -12.58495 -12.02224 -11.90795 -11.53981 -11.48784 -11.38863 -11.15139 -11.12671 -11.09867 -10.06390 -9.95119 -9.58807 -8.84484 -8.62360 -6.55533 0.86021 1.01383 1.42138 1.55864 1.59758 1.66419 2.20370 2.28303 2.82247 3.20404 3.69379 3.73717 3.79973 3.85217 4.01465 4.17572 4.34556 4.54093 4.70134 4.77174 4.87102 4.90012 4.90392 4.94837 5.00741 5.11320 5.12927 5.13717 5.25883 5.32582 5.51338 5.53410 5.65229 5.67287 5.86044 5.99546 6.28084 6.57887 6.81231 6.83183 7.02341 7.64081 7.93323 8.23677 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.028138 B = 0.003496 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.865441 B = 8006.581194 C = 8832.930600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.040 3.960 3 Si 0.989 3.011 4 H -0.259 1.259 5 H -0.261 1.261 6 H -0.264 1.264 7 C -0.478 4.478 8 H 0.084 0.916 9 C 0.111 3.889 10 C -0.303 4.303 11 C 0.114 3.886 12 N -0.585 5.585 13 C 0.352 3.648 14 N -0.661 5.661 15 C 0.686 3.314 16 O -0.583 6.583 17 N -0.728 5.728 18 C 0.151 3.849 19 C -0.117 4.117 20 C -0.140 4.140 21 C -0.135 4.135 22 C -0.131 4.131 23 C -0.272 4.272 24 H 0.294 0.706 25 H 0.115 0.885 26 H 0.146 0.854 27 H 0.419 0.581 28 H 0.410 0.590 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.109 0.891 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.469 -1.705 -9.908 16.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.178 4.178 3 Si 0.809 3.191 4 H -0.183 1.183 5 H -0.185 1.185 6 H -0.189 1.189 7 C -0.508 4.508 8 H 0.102 0.898 9 C 0.103 3.897 10 C -0.327 4.327 11 C -0.039 4.039 12 N -0.305 5.305 13 C 0.125 3.875 14 N -0.310 5.310 15 C 0.386 3.614 16 O -0.458 6.458 17 N -0.387 5.387 18 C 0.027 3.973 19 C -0.136 4.136 20 C -0.177 4.177 21 C -0.172 4.172 22 C -0.169 4.169 23 C -0.298 4.298 24 H 0.105 0.895 25 H 0.133 0.867 26 H 0.163 0.837 27 H 0.257 0.743 28 H 0.246 0.754 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.127 0.873 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.110 0.890 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -12.714 -3.376 -9.940 16.488 hybrid contribution 0.539 1.998 0.416 2.111 sum -12.175 -1.378 -9.524 15.519 Atomic orbital electron populations 1.69804 1.09107 1.31045 1.32848 1.26871 0.95564 1.04706 0.90706 0.85060 0.79371 0.75578 0.79127 1.18256 1.18527 1.18907 1.19924 0.99044 0.91954 1.39851 0.89784 1.18008 0.90865 0.93246 0.87611 1.21792 1.05442 0.93533 1.11902 1.21891 0.90504 0.98015 0.93466 1.67330 1.14917 1.27039 1.21259 1.18199 0.86876 0.90366 0.92082 1.42447 1.24298 1.09393 1.54873 1.16338 0.81366 0.83930 0.79804 1.90967 1.62845 1.30120 1.61900 1.45014 1.28951 1.11148 1.53554 1.21263 0.94708 0.84598 0.96732 1.22832 0.91998 1.00673 0.98098 1.23042 0.95480 1.01431 0.97739 1.22824 0.96233 0.99665 0.98516 1.22892 0.96090 0.96598 1.01340 1.21626 1.02376 0.95955 1.09868 0.89504 0.86719 0.83696 0.74318 0.75432 0.93075 0.93122 0.87290 0.90884 0.90678 0.89028 0.90931 0.90291 0.90164 0.84969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.73 10.70 21.84 0.23 -38.49 16 2 C 0.04 1.87 5.21 85.29 0.44 2.32 16 3 Si 0.99 35.43 29.60 68.60 2.03 37.46 16 4 H -0.26 -9.23 7.11 99.48 0.71 -8.52 16 5 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 6 H -0.26 -9.06 7.11 99.48 0.71 -8.35 16 7 C -0.48 -24.84 9.13 23.52 0.21 -24.62 16 8 H 0.08 4.19 7.92 -2.91 -0.02 4.17 16 9 C 0.11 6.03 5.66 -21.11 -0.12 5.92 16 10 C -0.30 -15.47 9.85 22.60 0.22 -15.25 16 11 C 0.11 5.77 11.10 84.27 0.94 6.70 16 12 N -0.59 -31.73 7.86 -194.27 -1.53 -33.26 16 13 C 0.35 17.96 7.42 132.76 0.98 18.94 16 14 N -0.66 -27.12 5.40 -322.36 -1.74 -28.86 16 15 C 0.69 27.62 8.53 179.05 1.53 29.14 16 16 O -0.58 -29.32 14.60 -3.95 -0.06 -29.38 16 17 N -0.73 -20.08 5.56 -478.52 -2.66 -22.74 16 18 C 0.15 3.68 5.50 86.38 0.47 4.15 16 19 C -0.12 -1.86 3.75 -10.27 -0.04 -1.90 16 20 C -0.14 -2.04 7.65 31.18 0.24 -1.80 16 21 C -0.14 -1.60 8.09 31.18 0.25 -1.35 16 22 C -0.13 -1.79 7.64 31.12 0.24 -1.56 16 23 C -0.27 -14.31 8.69 23.00 0.20 -14.11 16 24 H 0.29 12.48 8.29 -92.71 -0.77 11.71 16 25 H 0.11 5.34 8.06 -2.91 -0.02 5.31 16 26 H 0.15 6.36 8.06 -2.91 -0.02 6.34 16 27 H 0.42 13.84 8.71 -92.71 -0.81 13.03 16 28 H 0.41 8.30 8.49 -92.71 -0.79 7.51 16 29 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 30 H 0.05 1.39 7.88 -2.39 -0.02 1.37 16 31 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.07 1.24 7.92 -2.39 -0.02 1.22 16 33 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 34 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.08 1.18 8.10 -2.39 -0.02 1.16 16 38 H 0.13 6.82 5.87 -2.91 -0.02 6.81 16 Total: -1.00 -70.10 321.38 1.35 -68.75 By element: Atomic # 1 Polarization: 40.43 SS G_CDS: -0.50 Total: 39.92 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: 5.57 Total: 6.59 kcal Atomic # 7 Polarization: -117.65 SS G_CDS: -5.69 Total: -123.35 kcal Atomic # 8 Polarization: -29.32 SS G_CDS: -0.06 Total: -29.38 kcal Atomic # 14 Polarization: 35.43 SS G_CDS: 2.03 Total: 37.46 kcal Total: -70.10 1.35 -68.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871719824.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.482 kcal (2) G-P(sol) polarization free energy of solvation -70.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds