Wall clock time and date at job start Mon Mar 30 2020 02:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30735 * 1 3 3 Si 1.86803 * 119.99949 * 2 1 4 4 H 1.48507 * 109.47226 * 239.99469 * 3 2 1 5 5 H 1.48503 * 109.47134 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47462 * 119.99385 * 3 2 1 7 7 C 1.40033 * 120.00310 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00114 * 189.80263 * 7 2 1 9 9 C 1.41540 * 119.99998 * 9.80965 * 7 2 1 10 10 C 1.41168 * 120.99826 * 26.33506 * 9 7 2 11 11 C 1.36594 * 119.13106 * 180.25592 * 10 9 7 12 12 N 1.32069 * 121.25596 * 359.77777 * 11 10 9 13 13 C 1.32496 * 122.22942 * 359.97438 * 12 11 10 14 14 N 1.39454 * 119.64432 * 180.02562 * 13 12 11 15 15 C 1.34771 * 120.00636 * 354.63164 * 14 13 12 16 16 O 1.21584 * 119.99725 * 354.93980 * 15 14 13 17 17 N 1.34776 * 120.00560 * 174.94189 * 15 14 13 18 18 C 1.46498 * 120.00120 * 179.97438 * 17 15 14 19 19 C 1.53006 * 109.47137 * 180.02562 * 18 17 15 20 20 C 1.52997 * 109.47166 * 180.02562 * 19 18 17 21 21 C 1.52996 * 117.49722 * 243.75044 * 20 19 18 22 22 C 1.52996 * 117.49775 * 175.08720 * 20 19 18 23 23 C 1.38643 * 120.70388 * 359.97438 * 13 12 11 24 24 H 0.96999 * 120.00465 * 0.02562 * 1 2 3 25 25 H 1.08007 * 120.43301 * 0.03393 * 10 9 7 26 26 H 1.08000 * 119.37119 * 179.79087 * 11 10 9 27 27 H 0.97003 * 119.99764 * 174.63047 * 14 13 12 28 28 H 0.96998 * 119.99568 * 0.02562 * 17 15 14 29 29 H 1.09006 * 109.47348 * 300.00208 * 18 17 15 30 30 H 1.09005 * 109.47002 * 60.00282 * 18 17 15 31 31 H 1.08994 * 109.46649 * 300.00216 * 19 18 17 32 32 H 1.08998 * 109.46686 * 60.00282 * 19 18 17 33 33 H 1.09000 * 115.54882 * 29.41534 * 20 19 18 34 34 H 1.08999 * 117.50335 * 359.97438 * 21 20 19 35 35 H 1.09003 * 117.49970 * 145.02576 * 21 20 19 36 36 H 1.08999 * 117.49967 * 214.97742 * 22 20 19 37 37 H 1.08997 * 117.49712 * 359.97438 * 22 20 19 38 38 H 1.08001 * 120.66448 * 179.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.0952 1.6964 -1.2125 5 1 1.2763 2.7465 -0.0006 6 1 3.0950 1.6966 1.2125 7 6 2.0076 -1.2127 0.0005 8 1 3.0757 -1.2194 0.1598 9 6 1.3155 -2.4296 -0.2078 10 6 0.1068 -2.4631 -0.9364 11 6 -0.5321 -3.6579 -1.1099 12 7 -0.0381 -4.7776 -0.6135 13 6 1.0942 -4.8067 0.0739 14 7 1.5668 -6.0199 0.5734 15 6 0.8211 -7.1358 0.4504 16 8 -0.3012 -7.0690 -0.0124 17 7 1.3194 -8.3258 0.8405 18 6 0.5085 -9.5386 0.7073 19 6 1.3028 -10.7419 1.2194 20 6 0.4562 -12.0086 1.0797 21 6 0.0629 -12.7406 2.3644 22 6 1.1174 -13.3426 1.4322 23 6 1.8146 -3.6441 0.3010 24 1 -0.4851 0.8400 -0.0004 25 1 -0.3091 -1.5553 -1.3481 26 1 -1.4588 -3.6874 -1.6638 27 1 2.4324 -6.0607 1.0093 28 1 2.2146 -8.3790 1.2101 29 1 -0.4049 -9.4310 1.2924 30 1 0.2526 -9.6912 -0.3412 31 1 2.2163 -10.8496 0.6347 32 1 1.5583 -10.5890 2.2679 33 1 -0.2645 -12.0046 0.2620 34 1 0.4076 -12.3200 3.3090 35 1 -0.9163 -13.2186 2.3916 36 1 0.8314 -14.2163 0.8466 37 1 2.1556 -13.3178 1.7631 38 1 2.7373 -3.6686 0.8618 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871725012.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:31 Heat of formation + Delta-G solvation = 26.669072 kcal Electronic energy + Delta-G solvation = -19847.120913 eV Core-core repulsion = 16690.263259 eV Total energy + Delta-G solvation = -3156.857654 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.80904 -38.26189 -37.70879 -34.86921 -34.19932 -33.51775 -30.61967 -30.34011 -28.17745 -25.96751 -23.82841 -22.65964 -21.80732 -21.55961 -20.92286 -19.92027 -17.92502 -17.81966 -16.15025 -15.85938 -15.40326 -15.32550 -14.85615 -14.32180 -14.21989 -14.06661 -13.88500 -13.41036 -12.95516 -12.52565 -12.32002 -12.10136 -11.88866 -11.71617 -11.59926 -11.38981 -11.21808 -10.94505 -10.55901 -10.37366 -10.18786 -10.00289 -9.70665 -9.51874 -9.37030 -8.79492 -7.97443 -7.68934 -6.98642 -6.72105 -4.60301 2.75717 2.82042 2.99780 3.03120 3.05873 3.26492 3.50244 3.86364 3.90921 4.34114 4.56378 4.61922 4.64480 4.74010 4.96183 5.14642 5.30731 5.35389 5.39739 5.61761 5.73770 5.80620 5.82543 5.93673 5.99369 6.07918 6.55084 6.62270 6.72021 6.80723 6.95110 7.16795 7.29012 7.47207 7.58654 7.92664 8.12895 8.36783 8.52261 8.77158 8.78037 9.17684 9.77439 10.12911 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.057552 B = 0.002748 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.400897 B =10185.634597 C =10500.873211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.075 3.925 3 Si 0.916 3.084 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.455 4.455 8 H 0.080 0.920 9 C 0.146 3.854 10 C -0.224 4.224 11 C 0.104 3.896 12 N -0.553 5.553 13 C 0.366 3.634 14 N -0.671 5.671 15 C 0.690 3.310 16 O -0.531 6.531 17 N -0.756 5.756 18 C 0.144 3.856 19 C -0.100 4.100 20 C -0.149 4.149 21 C -0.180 4.180 22 C -0.181 4.181 23 C -0.306 4.306 24 H 0.283 0.717 25 H 0.131 0.869 26 H 0.122 0.878 27 H 0.402 0.598 28 H 0.390 0.610 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.109 0.891 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.635 -16.182 3.625 17.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.144 4.144 3 Si 0.740 3.260 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.487 4.487 8 H 0.098 0.902 9 C 0.138 3.862 10 C -0.247 4.247 11 C -0.046 4.046 12 N -0.272 5.272 13 C 0.137 3.863 14 N -0.319 5.319 15 C 0.390 3.610 16 O -0.402 6.402 17 N -0.414 5.414 18 C 0.020 3.980 19 C -0.137 4.137 20 C -0.168 4.168 21 C -0.217 4.217 22 C -0.218 4.218 23 C -0.332 4.332 24 H 0.094 0.906 25 H 0.149 0.851 26 H 0.140 0.860 27 H 0.236 0.764 28 H 0.223 0.777 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.127 0.873 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 2.854 -16.799 3.030 17.307 hybrid contribution 1.684 1.482 0.676 2.343 sum 4.538 -15.316 3.706 16.399 Atomic orbital electron populations 1.69744 1.07566 1.29446 1.34933 1.25964 0.94876 1.01468 0.92069 0.86244 0.79947 0.79817 0.79964 1.18775 1.20236 1.18952 1.19520 0.95720 0.90004 1.43431 0.90225 1.17592 0.90881 0.91433 0.86307 1.22077 0.99672 0.98278 1.04656 1.21634 0.97930 0.88061 0.97023 1.67190 1.13092 1.30122 1.16829 1.17758 0.91914 0.82753 0.93836 1.42580 1.21752 1.06362 1.61224 1.16083 0.85015 0.80047 0.79874 1.91021 1.17240 1.84439 1.47480 1.45202 1.19338 1.06326 1.70576 1.21069 0.93820 0.81801 1.01358 1.21367 0.98289 0.92322 1.01759 1.22187 1.02603 0.92222 0.99800 1.23070 0.99813 1.04308 0.94551 1.22979 0.98266 0.96647 1.03922 1.21177 1.05072 0.92407 1.14584 0.90617 0.85106 0.86034 0.76415 0.77705 0.91716 0.91731 0.90947 0.91224 0.87332 0.88729 0.88815 0.88826 0.88818 0.88099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.13 10.70 55.55 0.59 -19.53 16 2 C 0.07 1.84 5.31 -17.35 -0.09 1.75 16 3 Si 0.92 18.18 29.57 -169.99 -5.03 13.15 16 4 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 5 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 6 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 7 C -0.46 -11.79 9.13 -37.65 -0.34 -12.14 16 8 H 0.08 1.95 7.87 -52.49 -0.41 1.53 16 9 C 0.15 3.90 5.60 -106.55 -0.60 3.31 16 10 C -0.22 -5.92 8.73 -39.06 -0.34 -6.26 16 11 C 0.10 2.68 11.10 -18.04 -0.20 2.48 16 12 N -0.55 -14.66 7.89 -12.75 -0.10 -14.76 16 13 C 0.37 8.86 7.41 -154.68 -1.15 7.71 16 14 N -0.67 -12.84 5.40 -15.86 -0.09 -12.93 16 15 C 0.69 13.31 8.51 -86.92 -0.74 12.57 16 16 O -0.53 -12.88 14.64 5.29 0.08 -12.80 16 17 N -0.76 -10.09 5.56 -65.22 -0.36 -10.45 16 18 C 0.14 1.71 5.63 -4.04 -0.02 1.68 16 19 C -0.10 -0.82 5.61 -26.73 -0.15 -0.97 16 20 C -0.15 -1.18 5.73 -90.63 -0.52 -1.70 16 21 C -0.18 -1.31 10.18 -26.69 -0.27 -1.58 16 22 C -0.18 -1.24 10.25 -26.69 -0.27 -1.51 16 23 C -0.31 -7.48 9.74 -38.46 -0.37 -7.85 16 24 H 0.28 6.54 8.29 -40.82 -0.34 6.20 16 25 H 0.13 3.50 6.11 -52.48 -0.32 3.18 16 26 H 0.12 2.82 8.06 -52.49 -0.42 2.40 16 27 H 0.40 5.87 8.72 -40.82 -0.36 5.52 16 28 H 0.39 3.82 8.49 -40.82 -0.35 3.47 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.53 7.88 -51.93 -0.41 0.12 16 33 H 0.11 0.88 8.08 -51.93 -0.42 0.46 16 34 H 0.09 0.66 8.03 -51.93 -0.42 0.24 16 35 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 LS Contribution 326.46 15.07 4.92 4.92 Total: -1.00 -32.79 326.46 -10.25 -43.05 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -5.20 Total: 11.88 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -5.07 Total: -2.53 kcal Atomic # 7 Polarization: -57.71 SS G_CDS: 0.05 Total: -57.67 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: 0.08 Total: -12.80 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.03 Total: 13.15 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.79 -10.25 -43.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871725012.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.718 kcal (2) G-P(sol) polarization free energy of solvation -32.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds