Wall clock time and date at job start Mon Mar 30 2020 02:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30735 * 1 3 3 Si 1.86803 * 119.99949 * 2 1 4 4 H 1.48507 * 109.47226 * 239.99469 * 3 2 1 5 5 H 1.48503 * 109.47134 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47462 * 119.99385 * 3 2 1 7 7 C 1.40033 * 120.00310 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00114 * 189.80263 * 7 2 1 9 9 C 1.41540 * 119.99998 * 9.80965 * 7 2 1 10 10 C 1.41168 * 120.99826 * 26.33506 * 9 7 2 11 11 C 1.36594 * 119.13106 * 180.25592 * 10 9 7 12 12 N 1.32069 * 121.25596 * 359.77777 * 11 10 9 13 13 C 1.32496 * 122.22942 * 359.97438 * 12 11 10 14 14 N 1.39454 * 119.64432 * 180.02562 * 13 12 11 15 15 C 1.34771 * 120.00636 * 354.63164 * 14 13 12 16 16 O 1.21584 * 119.99725 * 354.93980 * 15 14 13 17 17 N 1.34776 * 120.00560 * 174.94189 * 15 14 13 18 18 C 1.46498 * 120.00120 * 179.97438 * 17 15 14 19 19 C 1.53006 * 109.47137 * 180.02562 * 18 17 15 20 20 C 1.52997 * 109.47166 * 180.02562 * 19 18 17 21 21 C 1.52996 * 117.49722 * 243.75044 * 20 19 18 22 22 C 1.52996 * 117.49775 * 175.08720 * 20 19 18 23 23 C 1.38643 * 120.70388 * 359.97438 * 13 12 11 24 24 H 0.96999 * 120.00465 * 0.02562 * 1 2 3 25 25 H 1.08007 * 120.43301 * 0.03393 * 10 9 7 26 26 H 1.08000 * 119.37119 * 179.79087 * 11 10 9 27 27 H 0.97003 * 119.99764 * 174.63047 * 14 13 12 28 28 H 0.96998 * 119.99568 * 0.02562 * 17 15 14 29 29 H 1.09006 * 109.47348 * 300.00208 * 18 17 15 30 30 H 1.09005 * 109.47002 * 60.00282 * 18 17 15 31 31 H 1.08994 * 109.46649 * 300.00216 * 19 18 17 32 32 H 1.08998 * 109.46686 * 60.00282 * 19 18 17 33 33 H 1.09000 * 115.54882 * 29.41534 * 20 19 18 34 34 H 1.08999 * 117.50335 * 359.97438 * 21 20 19 35 35 H 1.09003 * 117.49970 * 145.02576 * 21 20 19 36 36 H 1.08999 * 117.49967 * 214.97742 * 22 20 19 37 37 H 1.08997 * 117.49712 * 359.97438 * 22 20 19 38 38 H 1.08001 * 120.66448 * 179.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.0952 1.6964 -1.2125 5 1 1.2763 2.7465 -0.0006 6 1 3.0950 1.6966 1.2125 7 6 2.0076 -1.2127 0.0005 8 1 3.0757 -1.2194 0.1598 9 6 1.3155 -2.4296 -0.2078 10 6 0.1068 -2.4631 -0.9364 11 6 -0.5321 -3.6579 -1.1099 12 7 -0.0381 -4.7776 -0.6135 13 6 1.0942 -4.8067 0.0739 14 7 1.5668 -6.0199 0.5734 15 6 0.8211 -7.1358 0.4504 16 8 -0.3012 -7.0690 -0.0124 17 7 1.3194 -8.3258 0.8405 18 6 0.5085 -9.5386 0.7073 19 6 1.3028 -10.7419 1.2194 20 6 0.4562 -12.0086 1.0797 21 6 0.0629 -12.7406 2.3644 22 6 1.1174 -13.3426 1.4322 23 6 1.8146 -3.6441 0.3010 24 1 -0.4851 0.8400 -0.0004 25 1 -0.3091 -1.5553 -1.3481 26 1 -1.4588 -3.6874 -1.6638 27 1 2.4324 -6.0607 1.0093 28 1 2.2146 -8.3790 1.2101 29 1 -0.4049 -9.4310 1.2924 30 1 0.2526 -9.6912 -0.3412 31 1 2.2163 -10.8496 0.6347 32 1 1.5583 -10.5890 2.2679 33 1 -0.2645 -12.0046 0.2620 34 1 0.4076 -12.3200 3.3090 35 1 -0.9163 -13.2186 2.3916 36 1 0.8314 -14.2163 0.8466 37 1 2.1556 -13.3178 1.7631 38 1 2.7373 -3.6686 0.8618 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871725012.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:30 Heat of formation + Delta-G solvation = 6.193136 kcal Electronic energy + Delta-G solvation = -19848.008816 eV Core-core repulsion = 16690.263259 eV Total energy + Delta-G solvation = -3157.745557 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.41026 -39.86655 -38.57381 -36.38774 -35.70539 -35.31159 -32.56901 -31.49802 -29.83167 -27.90852 -24.95424 -23.66202 -23.29998 -23.09162 -21.93953 -21.19327 -19.69410 -19.31375 -17.82078 -17.03797 -16.83565 -16.42063 -16.20041 -16.04689 -15.87006 -15.38186 -15.11019 -14.81388 -14.49976 -14.25099 -14.15488 -13.19778 -12.97825 -12.85216 -12.83179 -12.69484 -12.33341 -12.24436 -12.07304 -11.86073 -11.47607 -11.30940 -11.18855 -11.09855 -10.78083 -10.07404 -9.94747 -9.62568 -8.84291 -8.58068 -6.57880 0.84274 1.00727 1.41836 1.54435 1.59449 1.62848 2.20816 2.29640 2.86030 2.92372 3.20028 3.76625 3.77408 3.96905 4.05669 4.13041 4.26592 4.35909 4.58723 4.69023 4.72434 4.83664 4.85109 4.94574 5.01256 5.05415 5.08979 5.12730 5.26584 5.30462 5.39225 5.50323 5.52853 5.65022 5.91957 5.97712 6.27045 6.55998 6.80349 6.83896 7.03122 7.62876 7.91299 8.29789 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.057552 B = 0.002748 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.400897 B =10185.634597 C =10500.873211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.032 3.968 3 Si 0.994 3.006 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.256 1.256 7 C -0.480 4.480 8 H 0.089 0.911 9 C 0.117 3.883 10 C -0.243 4.243 11 C 0.097 3.903 12 N -0.581 5.581 13 C 0.365 3.635 14 N -0.659 5.659 15 C 0.687 3.313 16 O -0.585 6.585 17 N -0.729 5.729 18 C 0.144 3.856 19 C -0.085 4.085 20 C -0.164 4.164 21 C -0.185 4.185 22 C -0.171 4.171 23 C -0.313 4.313 24 H 0.291 0.709 25 H 0.121 0.879 26 H 0.136 0.864 27 H 0.424 0.576 28 H 0.412 0.588 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.651 -16.656 4.630 18.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.184 4.184 3 Si 0.814 3.186 4 H -0.182 1.182 5 H -0.194 1.194 6 H -0.180 1.180 7 C -0.511 4.511 8 H 0.107 0.893 9 C 0.109 3.891 10 C -0.266 4.266 11 C -0.053 4.053 12 N -0.301 5.301 13 C 0.135 3.865 14 N -0.309 5.309 15 C 0.386 3.614 16 O -0.460 6.460 17 N -0.388 5.388 18 C 0.020 3.980 19 C -0.122 4.122 20 C -0.183 4.183 21 C -0.222 4.222 22 C -0.208 4.208 23 C -0.339 4.339 24 H 0.102 0.898 25 H 0.139 0.861 26 H 0.154 0.846 27 H 0.262 0.738 28 H 0.249 0.751 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.113 0.887 36 H 0.118 0.882 37 H 0.122 0.878 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 4.936 -17.345 4.077 18.489 hybrid contribution 1.029 1.538 0.390 1.891 sum 5.965 -15.808 4.467 17.476 Atomic orbital electron populations 1.69813 1.09207 1.30969 1.34660 1.26937 0.95645 1.04952 0.90860 0.85074 0.78522 0.74793 0.80246 1.18203 1.19401 1.18048 1.19869 0.96335 0.90663 1.44241 0.89299 1.18024 0.91352 0.92892 0.86839 1.22039 1.00530 0.98116 1.05940 1.21885 0.98463 0.87952 0.97036 1.67290 1.14444 1.30297 1.18083 1.18015 0.91146 0.84465 0.92905 1.42389 1.22629 1.05045 1.60822 1.16319 0.84381 0.81167 0.79535 1.90989 1.19684 1.85387 1.49915 1.44973 1.20267 1.04761 1.68798 1.21186 0.93957 0.82316 1.00588 1.21260 0.98044 0.90444 1.02473 1.22179 1.03173 0.92763 1.00199 1.23154 1.00287 1.04255 0.94474 1.23059 0.98644 0.95932 1.03204 1.21372 1.05958 0.91872 1.14712 0.89801 0.86131 0.84630 0.73804 0.75115 0.93176 0.93082 0.89618 0.89934 0.88059 0.88283 0.88658 0.88205 0.87831 0.85661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.07 10.70 21.84 0.23 -41.84 16 2 C 0.03 1.57 5.31 85.29 0.45 2.02 16 3 Si 0.99 36.37 29.57 68.60 2.03 38.40 16 4 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 5 H -0.27 -9.44 7.11 99.48 0.71 -8.73 16 6 H -0.26 -9.00 7.11 99.48 0.71 -8.29 16 7 C -0.48 -24.88 9.13 23.52 0.21 -24.66 16 8 H 0.09 4.29 7.87 -2.91 -0.02 4.26 16 9 C 0.12 6.35 5.60 -21.11 -0.12 6.23 16 10 C -0.24 -13.25 8.73 22.60 0.20 -13.06 16 11 C 0.10 5.14 11.10 84.27 0.94 6.08 16 12 N -0.58 -31.38 7.89 -194.27 -1.53 -32.92 16 13 C 0.36 17.65 7.41 132.76 0.98 18.63 16 14 N -0.66 -24.54 5.40 -322.37 -1.74 -26.28 16 15 C 0.69 26.06 8.51 179.06 1.52 27.58 16 16 O -0.58 -28.79 14.64 -3.98 -0.06 -28.85 16 17 N -0.73 -18.26 5.56 -478.52 -2.66 -20.92 16 18 C 0.14 3.26 5.63 86.38 0.49 3.75 16 19 C -0.08 -1.20 5.61 30.60 0.17 -1.03 16 20 C -0.16 -2.34 5.73 -10.80 -0.06 -2.40 16 21 C -0.18 -2.36 10.18 30.62 0.31 -2.05 16 22 C -0.17 -1.95 10.25 30.62 0.31 -1.64 16 23 C -0.31 -15.25 9.74 23.00 0.22 -15.03 16 24 H 0.29 13.47 8.29 -92.71 -0.77 12.70 16 25 H 0.12 6.71 6.11 -2.91 -0.02 6.69 16 26 H 0.14 6.51 8.06 -2.91 -0.02 6.49 16 27 H 0.42 11.49 8.72 -92.71 -0.81 10.68 16 28 H 0.41 6.86 8.49 -92.71 -0.79 6.07 16 29 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 30 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 31 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.08 1.00 7.88 -2.39 -0.02 0.98 16 33 H 0.10 1.58 8.08 -2.39 -0.02 1.56 16 34 H 0.10 1.17 8.03 -2.39 -0.02 1.16 16 35 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.13 5.30 8.06 -2.91 -0.02 5.28 16 Total: -1.00 -72.28 326.46 1.40 -70.87 By element: Atomic # 1 Polarization: 37.61 SS G_CDS: -0.50 Total: 37.10 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: 5.64 Total: 4.43 kcal Atomic # 7 Polarization: -116.26 SS G_CDS: -5.70 Total: -121.96 kcal Atomic # 8 Polarization: -28.79 SS G_CDS: -0.06 Total: -28.85 kcal Atomic # 14 Polarization: 36.37 SS G_CDS: 2.03 Total: 38.40 kcal Total: -72.28 1.40 -70.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871725012.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.067 kcal (2) G-P(sol) polarization free energy of solvation -72.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds