Wall clock time and date at job start Mon Mar 30 2020 01:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34710 * 116.99774 * 2 1 4 4 O 1.21465 * 120.00202 * 0.02562 * 3 2 1 5 5 C 1.47725 * 119.99768 * 180.02562 * 3 2 1 6 6 C 1.39655 * 120.24666 * 0.02562 * 5 3 2 7 7 C 1.37705 * 119.70982 * 180.09334 * 6 5 3 8 8 C 1.38903 * 120.59506 * 0.02562 * 7 6 5 9 9 C 1.38021 * 119.95138 * 359.78004 * 8 7 6 10 10 C 1.38394 * 119.99840 * 0.30989 * 9 8 7 11 11 C 1.50745 * 121.64130 * 180.54336 * 9 8 7 12 12 C 1.52886 * 109.96620 * 342.81608 * 11 9 8 13 13 N 1.47153 * 108.49889 * 50.48865 * 12 11 9 14 14 C 1.46901 * 111.00012 * 165.28961 * 13 12 11 15 15 C 1.50699 * 109.46744 * 190.00331 * 14 13 12 16 16 H 1.08001 * 120.00760 * 359.97438 * 15 14 13 17 17 C 1.37883 * 119.99920 * 180.02562 * 15 14 13 18 18 N 1.31522 * 119.99757 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00086 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47174 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47015 * 119.99928 * 19 17 15 22 22 H 1.48503 * 109.46893 * 239.99684 * 19 17 15 23 23 C 1.46615 * 110.27319 * 288.72168 * 13 12 11 24 24 H 1.09004 * 109.47197 * 299.99657 * 1 2 3 25 25 H 1.09001 * 109.47477 * 59.99112 * 1 2 3 26 26 H 1.08998 * 109.47141 * 179.97438 * 1 2 3 27 27 H 1.07999 * 120.14443 * 0.37330 * 6 5 3 28 28 H 1.07996 * 119.69983 * 180.02562 * 7 6 5 29 29 H 1.08001 * 119.88076 * 179.82621 * 10 9 8 30 30 H 1.09001 * 109.38613 * 102.96591 * 11 9 8 31 31 H 1.09001 * 109.39193 * 222.65845 * 11 9 8 32 32 H 1.09000 * 109.63232 * 170.19376 * 12 11 9 33 33 H 1.09000 * 109.62635 * 290.78546 * 12 11 9 34 34 H 1.09007 * 109.46758 * 309.99411 * 14 13 12 35 35 H 1.08991 * 109.47251 * 69.99830 * 14 13 12 36 36 H 0.96993 * 119.99971 * 180.02562 * 18 17 15 37 37 H 1.09000 * 109.26429 * 292.34714 * 23 13 12 38 38 H 1.08999 * 109.26737 * 172.87685 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5388 1.2776 -0.0006 6 6 4.3044 0.1096 -0.0017 7 6 5.6788 0.1946 -0.0002 8 6 6.3107 1.4316 0.0028 9 6 5.5592 2.5893 -0.0002 10 6 4.1771 2.5170 0.0003 11 6 6.2050 3.9513 -0.0092 12 6 7.6707 3.8369 0.4106 13 7 8.3064 2.7830 -0.3959 14 6 9.7703 2.8556 -0.2974 15 6 10.3887 1.9325 -1.3155 16 1 9.7574 1.3497 -1.9699 17 6 11.7604 1.8310 -1.4108 18 7 12.5292 2.5402 -0.6134 19 14 12.5269 0.6862 -2.6722 20 1 11.4533 0.0060 -3.4402 21 1 13.3787 1.4720 -3.6008 22 1 13.3581 -0.3299 -1.9780 23 6 7.8170 1.4636 0.0156 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 3.8207 -0.8559 -0.0082 28 1 6.2708 -0.7087 -0.0015 29 1 3.5909 3.4241 0.0008 30 1 6.1480 4.3721 -1.0131 31 1 5.6794 4.6057 0.6862 32 1 8.1766 4.7866 0.2367 33 1 7.7295 3.5754 1.4671 34 1 10.0970 3.8779 -0.4882 35 1 10.0826 2.5551 0.7027 36 1 13.4942 2.4691 -0.6807 37 1 8.1729 1.2461 1.0227 38 1 8.1987 0.7081 -0.6712 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880349900.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:02 Heat of formation + Delta-G solvation = -60.719018 kcal Electronic energy + Delta-G solvation = -20522.297290 eV Core-core repulsion = 17329.357453 eV Total energy + Delta-G solvation = -3192.939837 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.68482 -39.55418 -36.84813 -36.37727 -33.29132 -32.34490 -31.53040 -29.12647 -28.24537 -26.98162 -24.94352 -23.21144 -22.54132 -21.95905 -20.84907 -19.25546 -17.61123 -17.15711 -16.48521 -16.38243 -15.66833 -15.41995 -14.65275 -14.52409 -14.34538 -13.96301 -13.63383 -13.47836 -13.27337 -12.91155 -12.65187 -12.38103 -12.14908 -11.90748 -11.67259 -11.32516 -11.16337 -11.02384 -10.99596 -10.71839 -10.62765 -10.50865 -10.34256 -9.84127 -9.23935 -8.81762 -8.52771 -8.46216 -7.36762 -6.08041 -4.09941 0.73879 1.42824 2.51056 2.54841 3.28121 3.36019 3.40573 3.80659 4.37918 4.61356 4.75964 4.83741 4.87293 4.94548 4.96277 5.07318 5.25582 5.27340 5.30812 5.39076 5.60419 5.69410 5.80761 5.93654 6.05521 6.08180 6.12290 6.20329 6.30091 6.33461 6.40990 6.51865 6.75202 6.96613 7.17833 7.24266 7.62596 7.73236 7.98194 8.10152 8.44881 8.97909 9.54992 11.02792 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.032495 B = 0.003637 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.460215 B = 7697.353362 C = 8325.117964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.356 6.356 3 C 0.513 3.487 4 O -0.513 6.513 5 C -0.144 4.144 6 C -0.067 4.067 7 C -0.133 4.133 8 C -0.023 4.023 9 C -0.080 4.080 10 C -0.054 4.054 11 C -0.074 4.074 12 C 0.048 3.952 13 N -0.531 5.531 14 C 0.192 3.808 15 C -0.510 4.510 16 H 0.064 0.936 17 C 0.056 3.944 18 N -0.898 5.898 19 Si 0.897 3.103 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.285 1.285 23 C 0.093 3.907 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.101 0.899 27 H 0.134 0.866 28 H 0.132 0.868 29 H 0.133 0.867 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.028 0.972 34 H 0.034 0.966 35 H -0.007 1.007 36 H 0.261 0.739 37 H 0.046 0.954 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.893 -4.070 3.085 19.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.359 3.641 4 O -0.402 6.402 5 C -0.145 4.145 6 C -0.085 4.085 7 C -0.151 4.151 8 C -0.024 4.024 9 C -0.080 4.080 10 C -0.072 4.072 11 C -0.112 4.112 12 C -0.080 4.080 13 N -0.255 5.255 14 C 0.067 3.933 15 C -0.548 4.548 16 H 0.082 0.918 17 C -0.146 4.146 18 N -0.537 5.537 19 Si 0.725 3.275 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.211 1.211 23 C -0.035 4.035 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.119 0.881 27 H 0.152 0.848 28 H 0.150 0.850 29 H 0.151 0.849 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.046 0.954 34 H 0.052 0.948 35 H 0.011 0.989 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -19.050 -3.667 2.624 19.576 hybrid contribution 0.511 -0.696 0.182 0.883 sum -18.539 -4.363 2.807 19.251 Atomic orbital electron populations 1.23258 0.76238 1.03635 1.02565 1.86554 1.23352 1.32888 1.84465 1.21313 0.89267 0.81227 0.72281 1.90810 1.66909 1.36062 1.46432 1.18880 0.88353 0.95205 1.12043 1.21264 0.93707 0.97547 0.96029 1.21105 0.94132 0.97718 1.02189 1.20369 0.96890 0.92330 0.92778 1.19621 0.92071 0.95924 1.00419 1.21167 0.93933 0.96510 0.95606 1.20583 0.95552 0.92462 1.02580 1.22109 0.93703 0.97181 0.95032 1.62440 1.10125 1.00699 1.52269 1.19794 0.79392 0.98162 0.95974 1.21189 0.91071 1.24267 1.18299 0.91755 1.24995 0.97253 0.96137 0.96180 1.69964 1.04464 1.40947 1.38355 0.86446 0.79240 0.80532 0.81254 1.19599 1.20975 1.21093 1.21014 0.87936 0.94716 0.99849 0.91911 0.91883 0.88055 0.84809 0.85009 0.84907 0.89731 0.90906 0.90459 0.95362 0.94785 0.98885 0.92906 0.93595 0.88165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.56 101.05 1.07 1.36 16 2 O -0.36 -4.07 9.83 -40.52 -0.40 -4.47 16 3 C 0.51 7.00 7.90 34.61 0.27 7.27 16 4 O -0.51 -8.00 16.14 -19.24 -0.31 -8.31 16 5 C -0.14 -1.97 5.87 -105.05 -0.62 -2.59 16 6 C -0.07 -0.84 9.62 -39.25 -0.38 -1.22 16 7 C -0.13 -1.81 9.62 -39.53 -0.38 -2.19 16 8 C -0.02 -0.37 5.81 -104.47 -0.61 -0.97 16 9 C -0.08 -1.22 5.77 -104.62 -0.60 -1.82 16 10 C -0.05 -0.76 9.20 -39.08 -0.36 -1.12 16 11 C -0.07 -1.08 5.94 -27.92 -0.17 -1.25 16 12 C 0.05 0.84 5.57 -3.74 -0.02 0.81 16 13 N -0.53 -11.04 4.67 -237.63 -1.11 -12.15 16 14 C 0.19 4.80 4.71 -4.98 -0.02 4.78 16 15 C -0.51 -13.85 8.57 -34.44 -0.30 -14.15 16 16 H 0.06 1.73 7.15 -52.49 -0.38 1.36 16 17 C 0.06 1.54 5.46 -17.81 -0.10 1.45 16 18 N -0.90 -26.09 13.29 55.43 0.74 -25.35 16 19 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 20 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 C 0.09 1.72 4.97 -5.14 -0.03 1.70 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.13 1.38 7.62 -52.49 -0.40 0.98 16 28 H 0.13 1.54 8.06 -52.49 -0.42 1.11 16 29 H 0.13 1.76 7.64 -52.49 -0.40 1.36 16 30 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.08 1.31 7.85 -51.93 -0.41 0.90 16 33 H 0.03 0.48 8.05 -51.93 -0.42 0.06 16 34 H 0.03 0.91 7.89 -51.92 -0.41 0.50 16 35 H -0.01 -0.18 8.06 -51.93 -0.42 -0.60 16 36 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 37 H 0.05 0.86 8.07 -51.93 -0.42 0.44 16 38 H 0.10 1.96 6.99 -51.93 -0.36 1.59 16 LS Contribution 320.73 15.07 4.83 4.83 Total: -1.00 -30.84 320.73 -8.78 -39.62 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -5.28 Total: -2.36 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: -2.23 Total: -7.95 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: -0.37 Total: -37.50 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: -0.71 Total: -12.77 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.84 -8.78 -39.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880349900.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.100 kcal (2) G-P(sol) polarization free energy of solvation -30.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds