Wall clock time and date at job start Mon Mar 30 2020 01:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34710 * 116.99774 * 2 1 4 4 O 1.21465 * 120.00202 * 0.02562 * 3 2 1 5 5 C 1.47725 * 119.99768 * 180.02562 * 3 2 1 6 6 C 1.39655 * 120.24666 * 0.02562 * 5 3 2 7 7 C 1.37705 * 119.70982 * 180.09334 * 6 5 3 8 8 C 1.38903 * 120.59506 * 0.02562 * 7 6 5 9 9 C 1.38021 * 119.95138 * 359.78004 * 8 7 6 10 10 C 1.38394 * 119.99840 * 0.30989 * 9 8 7 11 11 C 1.50745 * 121.64130 * 180.54336 * 9 8 7 12 12 C 1.52886 * 109.96620 * 342.81608 * 11 9 8 13 13 N 1.47153 * 108.49889 * 50.48865 * 12 11 9 14 14 C 1.46901 * 111.00012 * 165.28961 * 13 12 11 15 15 C 1.50699 * 109.46744 * 190.00331 * 14 13 12 16 16 H 1.08001 * 120.00760 * 359.97438 * 15 14 13 17 17 C 1.37883 * 119.99920 * 180.02562 * 15 14 13 18 18 N 1.31522 * 119.99757 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00086 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47174 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47015 * 119.99928 * 19 17 15 22 22 H 1.48503 * 109.46893 * 239.99684 * 19 17 15 23 23 C 1.46615 * 110.27319 * 288.72168 * 13 12 11 24 24 H 1.09004 * 109.47197 * 299.99657 * 1 2 3 25 25 H 1.09001 * 109.47477 * 59.99112 * 1 2 3 26 26 H 1.08998 * 109.47141 * 179.97438 * 1 2 3 27 27 H 1.07999 * 120.14443 * 0.37330 * 6 5 3 28 28 H 1.07996 * 119.69983 * 180.02562 * 7 6 5 29 29 H 1.08001 * 119.88076 * 179.82621 * 10 9 8 30 30 H 1.09001 * 109.38613 * 102.96591 * 11 9 8 31 31 H 1.09001 * 109.39193 * 222.65845 * 11 9 8 32 32 H 1.09000 * 109.63232 * 170.19376 * 12 11 9 33 33 H 1.09000 * 109.62635 * 290.78546 * 12 11 9 34 34 H 1.09007 * 109.46758 * 309.99411 * 14 13 12 35 35 H 1.08991 * 109.47251 * 69.99830 * 14 13 12 36 36 H 0.96993 * 119.99971 * 180.02562 * 18 17 15 37 37 H 1.09000 * 109.26429 * 292.34714 * 23 13 12 38 38 H 1.08999 * 109.26737 * 172.87685 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5388 1.2776 -0.0006 6 6 4.3044 0.1096 -0.0017 7 6 5.6788 0.1946 -0.0002 8 6 6.3107 1.4316 0.0028 9 6 5.5592 2.5893 -0.0002 10 6 4.1771 2.5170 0.0003 11 6 6.2050 3.9513 -0.0092 12 6 7.6707 3.8369 0.4106 13 7 8.3064 2.7830 -0.3959 14 6 9.7703 2.8556 -0.2974 15 6 10.3887 1.9325 -1.3155 16 1 9.7574 1.3497 -1.9699 17 6 11.7604 1.8310 -1.4108 18 7 12.5292 2.5402 -0.6134 19 14 12.5269 0.6862 -2.6722 20 1 11.4533 0.0060 -3.4402 21 1 13.3787 1.4720 -3.6008 22 1 13.3581 -0.3299 -1.9780 23 6 7.8170 1.4636 0.0156 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 3.8207 -0.8559 -0.0082 28 1 6.2708 -0.7087 -0.0015 29 1 3.5909 3.4241 0.0008 30 1 6.1480 4.3721 -1.0131 31 1 5.6794 4.6057 0.6862 32 1 8.1766 4.7866 0.2367 33 1 7.7295 3.5754 1.4671 34 1 10.0970 3.8779 -0.4882 35 1 10.0826 2.5551 0.7027 36 1 13.4942 2.4691 -0.6807 37 1 8.1729 1.2461 1.0227 38 1 8.1987 0.7081 -0.6712 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880349900.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:01 Heat of formation + Delta-G solvation = -78.807990 kcal Electronic energy + Delta-G solvation = -20523.081687 eV Core-core repulsion = 17329.357453 eV Total energy + Delta-G solvation = -3193.724234 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.72423 -40.72687 -38.17881 -37.45816 -35.07493 -33.78758 -32.89243 -30.42490 -29.35733 -28.41346 -26.42726 -24.47188 -23.96187 -23.30499 -22.16452 -20.48605 -18.71545 -18.48974 -18.06426 -17.39676 -17.05681 -16.84398 -16.23549 -15.86982 -15.54664 -15.24467 -14.88008 -14.64055 -14.37929 -14.22980 -14.14261 -13.75876 -13.41894 -13.10875 -13.04816 -12.88593 -12.71148 -12.51437 -12.33955 -12.19160 -11.93176 -11.82487 -11.75744 -11.43219 -11.18591 -10.62166 -9.93114 -9.65137 -9.06182 -8.20326 -6.30324 -0.36674 0.35549 1.42243 1.43547 1.43727 1.56694 1.66071 2.41155 2.70866 3.12085 3.23330 3.61206 3.71496 3.81797 3.92979 4.12531 4.25449 4.32441 4.34668 4.35462 4.49385 4.55364 4.61038 4.71603 4.79962 4.85045 4.90432 5.00353 5.09073 5.15781 5.21752 5.24977 5.27774 5.38263 5.56632 5.66451 5.84437 6.03501 6.30145 6.57005 6.63669 6.85694 7.39782 8.90980 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.032495 B = 0.003637 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.460215 B = 7697.353362 C = 8325.117964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.355 6.355 3 C 0.516 3.484 4 O -0.537 6.537 5 C -0.147 4.147 6 C -0.055 4.055 7 C -0.130 4.130 8 C -0.044 4.044 9 C -0.089 4.089 10 C -0.055 4.055 11 C -0.067 4.067 12 C 0.046 3.954 13 N -0.541 5.541 14 C 0.207 3.793 15 C -0.523 4.523 16 H 0.064 0.936 17 C 0.003 3.997 18 N -0.934 5.934 19 Si 0.968 3.032 20 H -0.262 1.262 21 H -0.280 1.280 22 H -0.278 1.278 23 C 0.099 3.901 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.136 0.864 27 H 0.162 0.838 28 H 0.150 0.850 29 H 0.141 0.859 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.075 0.925 33 H 0.029 0.971 34 H 0.009 0.991 35 H -0.033 1.033 36 H 0.264 0.736 37 H 0.037 0.963 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.813 -5.619 2.519 21.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.271 6.271 3 C 0.363 3.637 4 O -0.429 6.429 5 C -0.149 4.149 6 C -0.073 4.073 7 C -0.148 4.148 8 C -0.044 4.044 9 C -0.090 4.090 10 C -0.073 4.073 11 C -0.104 4.104 12 C -0.082 4.082 13 N -0.265 5.265 14 C 0.081 3.919 15 C -0.561 4.561 16 H 0.082 0.918 17 C -0.195 4.195 18 N -0.575 5.575 19 Si 0.793 3.207 20 H -0.186 1.186 21 H -0.206 1.206 22 H -0.204 1.204 23 C -0.029 4.029 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.154 0.846 27 H 0.179 0.821 28 H 0.168 0.832 29 H 0.159 0.841 30 H 0.103 0.897 31 H 0.120 0.880 32 H 0.093 0.907 33 H 0.047 0.953 34 H 0.027 0.973 35 H -0.016 1.016 36 H 0.073 0.927 37 H 0.055 0.945 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -21.001 -5.230 2.062 21.741 hybrid contribution 0.985 -0.236 0.399 1.088 sum -20.016 -5.465 2.462 20.895 Atomic orbital electron populations 1.23610 0.74175 1.05982 1.02666 1.86537 1.25322 1.31475 1.83791 1.21262 0.89141 0.81540 0.71726 1.90801 1.67385 1.36996 1.47674 1.19075 0.88878 0.95486 1.11416 1.21504 0.93046 0.98391 0.94400 1.21284 0.94823 0.97411 1.01263 1.20217 0.95024 0.93895 0.95290 1.19670 0.92619 0.95768 1.00897 1.21203 0.93352 0.97278 0.95491 1.20551 0.93448 0.93077 1.03340 1.22204 0.95402 0.95891 0.94690 1.62339 1.07567 1.02847 1.53743 1.19433 0.82367 0.96104 0.94034 1.21484 0.91561 1.24497 1.18561 0.91818 1.25895 0.97798 0.97680 0.98162 1.70086 1.04850 1.42503 1.40052 0.85349 0.78342 0.78424 0.78607 1.18630 1.20604 1.20375 1.20873 0.90158 0.93008 0.98860 0.91789 0.91882 0.84629 0.82053 0.83247 0.84122 0.89671 0.87988 0.90665 0.95276 0.97318 1.01568 0.92669 0.94470 0.89673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 113.37 1.20 1.57 16 2 O -0.36 -7.09 9.83 -56.19 -0.55 -7.64 16 3 C 0.52 12.93 7.90 70.33 0.56 13.48 16 4 O -0.54 -15.85 16.14 19.95 0.32 -15.53 16 5 C -0.15 -3.72 5.87 -20.14 -0.12 -3.83 16 6 C -0.06 -1.24 9.62 22.49 0.22 -1.02 16 7 C -0.13 -3.27 9.62 22.30 0.21 -3.05 16 8 C -0.04 -1.36 5.81 -19.76 -0.11 -1.48 16 9 C -0.09 -2.61 5.77 -19.86 -0.11 -2.73 16 10 C -0.06 -1.46 9.20 22.59 0.21 -1.25 16 11 C -0.07 -1.89 5.94 29.82 0.18 -1.71 16 12 C 0.05 1.62 5.57 86.22 0.48 2.10 16 13 N -0.54 -23.11 4.67 -905.74 -4.23 -27.34 16 14 C 0.21 10.83 4.71 85.56 0.40 11.23 16 15 C -0.52 -29.08 8.57 25.60 0.22 -28.86 16 16 H 0.06 3.48 7.15 -2.91 -0.02 3.46 16 17 C 0.00 0.15 5.46 84.65 0.46 0.61 16 18 N -0.93 -55.51 13.29 21.45 0.28 -55.22 16 19 Si 0.97 43.57 29.54 68.60 2.03 45.59 16 20 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 21 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 22 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 23 C 0.10 3.74 4.97 85.60 0.43 4.17 16 24 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 25 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.14 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.16 2.70 7.62 -2.91 -0.02 2.68 16 28 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 29 H 0.14 3.48 7.64 -2.91 -0.02 3.45 16 30 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.07 2.61 7.85 -2.39 -0.02 2.59 16 33 H 0.03 1.00 8.05 -2.39 -0.02 0.99 16 34 H 0.01 0.49 7.89 -2.38 -0.02 0.47 16 35 H -0.03 -1.89 8.06 -2.39 -0.02 -1.90 16 36 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 37 H 0.04 1.44 8.07 -2.39 -0.02 1.42 16 38 H 0.09 3.40 6.99 -2.39 -0.02 3.39 16 Total: -1.00 -67.03 320.73 3.12 -63.91 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: 1.05 Total: 7.00 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: 4.21 Total: -10.77 kcal Atomic # 7 Polarization: -78.62 SS G_CDS: -3.94 Total: -82.56 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: -0.23 Total: -23.17 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -67.03 3.12 -63.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880349900.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.894 kcal (2) G-P(sol) polarization free energy of solvation -67.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds