Wall clock time and date at job start Mon Mar 30 2020 01:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86798 * 119.99811 * 2 1 4 4 H 1.48503 * 109.47388 * 270.00129 * 3 2 1 5 5 H 1.48500 * 109.47254 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47255 * 150.00063 * 3 2 1 7 7 C 1.37873 * 120.00227 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99930 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99998 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47068 * 180.02562 * 9 7 2 11 11 C 1.34777 * 120.00183 * 180.02562 * 10 9 7 12 12 O 1.21582 * 119.99619 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00509 * 179.97438 * 11 10 9 14 14 C 1.39393 * 120.00517 * 185.09034 * 13 11 10 15 15 C 1.39059 * 119.78507 * 174.91188 * 14 13 11 16 16 C 1.38111 * 118.77917 * 180.08967 * 15 14 13 17 17 C 1.39395 * 118.97756 * 359.89475 * 16 15 14 18 18 C 1.37494 * 119.29293 * 359.93842 * 17 16 15 19 19 N 1.31993 * 119.77776 * 354.89309 * 14 13 11 20 20 C 1.50737 * 122.35073 * 180.40981 * 18 17 16 21 21 C 1.52715 * 110.58689 * 342.10926 * 20 18 17 22 22 C 1.53333 * 108.41758 * 51.28960 * 21 20 18 23 23 C 1.50521 * 117.87333 * 179.72290 * 17 16 15 24 24 H 0.96999 * 120.00593 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47005 * 60.00257 * 9 7 2 26 26 H 1.08995 * 109.47074 * 300.00300 * 9 7 2 27 27 H 0.96998 * 120.00028 * 359.97438 * 10 9 7 28 28 H 0.97007 * 119.99723 * 5.09207 * 13 11 10 29 29 H 1.08003 * 120.61003 * 0.08442 * 15 14 13 30 30 H 1.07997 * 120.50875 * 180.17463 * 16 15 14 31 31 H 1.09000 * 109.25713 * 221.82573 * 20 18 17 32 32 H 1.08999 * 109.22877 * 102.37771 * 20 18 17 33 33 H 1.09001 * 109.67673 * 291.55759 * 21 20 18 34 34 H 1.09005 * 109.67658 * 171.01833 * 21 20 18 35 35 H 1.08994 * 109.68763 * 170.44834 * 22 21 20 36 36 H 1.08999 * 109.68885 * 49.87766 * 22 21 20 37 37 H 1.09010 * 109.25182 * 282.97400 * 23 17 16 38 38 H 1.09001 * 109.25887 * 42.40262 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 1.7539 -4.8833 -0.0011 12 8 0.5586 -5.1055 -0.0011 13 7 2.6297 -5.9077 -0.0016 14 6 2.1688 -7.2188 -0.1092 15 6 3.0792 -8.2645 -0.2161 16 6 2.5997 -9.5552 -0.3236 17 6 1.2218 -9.7663 -0.3190 18 6 0.3764 -8.6878 -0.2068 19 7 0.8710 -7.4595 -0.1086 20 6 -1.1234 -8.8374 -0.1854 21 6 -1.5348 -10.2017 -0.7346 22 6 -0.7318 -11.2819 0.0000 23 6 0.7264 -11.1822 -0.4439 24 1 -0.4851 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6247 -2.5570 0.8896 27 1 3.1567 -3.4353 -0.0009 28 1 3.5809 -5.7326 0.0730 29 1 4.1417 -8.0708 -0.2152 30 1 3.2818 -10.3885 -0.4052 31 1 -1.5715 -8.0540 -0.7966 32 1 -1.4792 -8.7407 0.8403 33 1 -1.3203 -10.2475 -1.8023 34 1 -2.6004 -10.3588 -0.5667 35 1 -1.1257 -12.2667 -0.2510 36 1 -0.7999 -11.1219 1.0761 37 1 0.8085 -11.5014 -1.4829 38 1 1.3377 -11.8334 0.1809 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880947667.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:42 Heat of formation + Delta-G solvation = -24.745568 kcal Electronic energy + Delta-G solvation = -20443.581301 eV Core-core repulsion = 17284.494141 eV Total energy + Delta-G solvation = -3159.087160 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.94666 -40.62881 -37.80231 -36.13006 -35.33666 -34.33370 -34.09275 -30.87913 -30.41564 -29.02970 -25.64665 -24.55112 -23.92602 -23.46826 -21.85174 -20.88765 -19.87632 -18.63243 -18.06133 -17.19687 -16.80717 -16.72104 -16.44792 -15.78494 -15.48388 -15.20569 -14.85123 -14.73360 -14.63889 -14.20030 -14.05617 -14.00375 -13.58645 -13.11793 -12.96511 -12.90283 -12.70599 -12.22826 -11.79369 -11.73410 -11.54420 -11.49129 -11.34341 -11.24780 -10.81394 -10.54121 -9.95166 -9.88253 -8.97544 -8.29444 -6.46612 0.18827 0.45401 1.42137 1.45997 1.55502 1.61977 2.17075 2.37809 2.94425 3.05604 3.13259 3.56940 3.77756 3.98514 4.02830 4.06132 4.13710 4.33153 4.44534 4.59307 4.69844 4.82168 4.89897 4.93174 5.04987 5.07328 5.13230 5.20053 5.23401 5.28563 5.42865 5.43935 5.47310 5.49133 5.63644 5.81155 5.94780 6.04113 6.64328 6.99519 7.23151 7.41533 7.69728 8.83102 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.039260 B = 0.003308 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.029685 B = 8461.665098 C = 9117.953864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.989 3.011 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.254 1.254 7 C -0.555 4.555 8 H 0.086 0.914 9 C 0.287 3.713 10 N -0.717 5.717 11 C 0.680 3.320 12 O -0.591 6.591 13 N -0.658 5.658 14 C 0.350 3.650 15 C -0.201 4.201 16 C -0.046 4.046 17 C -0.164 4.164 18 C 0.134 3.866 19 N -0.535 5.535 20 C -0.071 4.071 21 C -0.111 4.111 22 C -0.118 4.118 23 C -0.066 4.066 24 H 0.269 0.731 25 H -0.016 1.016 26 H -0.015 1.015 27 H 0.406 0.594 28 H 0.430 0.570 29 H 0.172 0.828 30 H 0.180 0.820 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.060 0.940 37 H 0.089 0.911 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.211 -24.722 -0.967 26.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.811 3.189 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.178 1.178 7 C -0.593 4.593 8 H 0.104 0.896 9 C 0.164 3.836 10 N -0.373 5.373 11 C 0.379 3.621 12 O -0.467 6.467 13 N -0.309 5.309 14 C 0.116 3.884 15 C -0.224 4.224 16 C -0.072 4.072 17 C -0.168 4.168 18 C -0.002 4.002 19 N -0.250 5.250 20 C -0.109 4.109 21 C -0.148 4.148 22 C -0.156 4.156 23 C -0.104 4.104 24 H 0.078 0.922 25 H 0.002 0.998 26 H 0.003 0.997 27 H 0.242 0.758 28 H 0.270 0.730 29 H 0.189 0.811 30 H 0.198 0.802 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.113 0.887 36 H 0.079 0.921 37 H 0.107 0.893 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.394 -23.967 -0.897 24.822 hybrid contribution 1.127 1.139 0.039 1.603 sum 7.521 -22.828 -0.858 24.050 Atomic orbital electron populations 1.70151 1.08370 1.28630 1.49857 1.26105 0.95798 1.03996 0.93807 0.85102 0.78454 0.76689 0.78608 1.19564 1.20949 1.17770 1.21592 0.94385 0.90268 1.53042 0.89587 1.18419 0.88043 0.83205 0.93907 1.45341 1.11106 1.03361 1.77452 1.16444 0.85401 0.81494 0.78773 1.90963 1.15761 1.83869 1.56077 1.42568 1.10604 1.02465 1.75311 1.18535 0.89736 0.84712 0.95400 1.21756 1.01103 0.91739 1.07786 1.21831 0.94825 0.96999 0.93541 1.20761 0.94138 0.97375 1.04524 1.21271 0.97314 0.86733 0.94837 1.67381 1.15170 1.25444 1.17037 1.20397 0.89093 0.99477 1.01930 1.21555 1.00996 0.92086 1.00199 1.21587 0.94517 0.99420 1.00042 1.20424 0.96778 0.89978 1.03175 0.92209 0.99784 0.99717 0.75830 0.73009 0.81058 0.80222 0.92666 0.90881 0.91430 0.89698 0.88678 0.92134 0.89310 0.88490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.52 13.29 21.44 0.28 -57.24 16 2 C 0.00 0.14 5.46 84.65 0.46 0.60 16 3 Si 0.99 42.92 29.54 68.60 2.03 44.94 16 4 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 6 H -0.25 -10.19 7.11 99.48 0.71 -9.48 16 7 C -0.56 -30.90 9.28 25.60 0.24 -30.66 16 8 H 0.09 4.28 7.60 -2.91 -0.02 4.26 16 9 C 0.29 16.54 5.43 85.63 0.46 17.00 16 10 N -0.72 -32.45 5.55 -482.32 -2.68 -35.13 16 11 C 0.68 31.10 8.52 179.06 1.53 32.63 16 12 O -0.59 -33.55 14.61 -3.97 -0.06 -33.61 16 13 N -0.66 -21.94 5.40 -322.44 -1.74 -23.68 16 14 C 0.35 11.64 7.43 133.03 0.99 12.63 16 15 C -0.20 -4.34 9.96 22.44 0.22 -4.11 16 16 C -0.05 -0.83 9.74 22.52 0.22 -0.61 16 17 C -0.16 -3.61 5.74 -19.82 -0.11 -3.72 16 18 C 0.13 4.20 6.62 42.25 0.28 4.48 16 19 N -0.54 -21.34 7.72 -181.21 -1.40 -22.74 16 20 C -0.07 -2.01 5.91 29.77 0.18 -1.83 16 21 C -0.11 -2.01 5.97 30.61 0.18 -1.82 16 22 C -0.12 -1.60 5.99 30.62 0.18 -1.42 16 23 C -0.07 -0.88 5.68 29.71 0.17 -0.71 16 24 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 25 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 26 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 27 H 0.41 14.76 8.34 -92.71 -0.77 13.98 16 28 H 0.43 9.80 8.72 -92.70 -0.81 8.99 16 29 H 0.17 2.26 8.06 -2.91 -0.02 2.24 16 30 H 0.18 1.54 8.06 -2.91 -0.02 1.52 16 31 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.07 1.20 8.10 -2.39 -0.02 1.18 16 34 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 35 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.06 0.91 8.10 -2.39 -0.02 0.89 16 37 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 38 H 0.10 0.85 8.13 -2.39 -0.02 0.83 16 Total: -1.00 -84.09 319.54 0.94 -83.15 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: -0.49 Total: 21.85 kcal Atomic # 6 Polarization: 17.47 SS G_CDS: 5.00 Total: 22.46 kcal Atomic # 7 Polarization: -133.26 SS G_CDS: -5.53 Total: -138.79 kcal Atomic # 8 Polarization: -33.55 SS G_CDS: -0.06 Total: -33.61 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.94 kcal Total: -84.09 0.94 -83.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880947667.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.401 kcal (2) G-P(sol) polarization free energy of solvation -84.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds