Wall clock time and date at job start Mon Mar 30 2020 02:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86796 * 119.99836 * 2 1 4 4 H 1.48502 * 109.47426 * 270.00445 * 3 2 1 5 5 H 1.48501 * 109.47157 * 30.00382 * 3 2 1 6 6 H 1.48500 * 109.47019 * 150.00524 * 3 2 1 7 7 C 1.40022 * 120.00010 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99948 * 179.97438 * 7 2 1 9 9 C 1.41335 * 120.00341 * 359.97438 * 7 2 1 10 10 C 1.40608 * 119.78858 * 179.97438 * 9 7 2 11 11 C 1.38313 * 119.12791 * 180.02562 * 10 9 7 12 12 C 1.38691 * 118.67194 * 359.72927 * 11 10 9 13 13 C 1.39642 * 119.49349 * 0.53640 * 12 11 10 14 14 N 1.39253 * 119.57389 * 179.72162 * 13 12 11 15 15 C 1.34779 * 120.00089 * 185.40097 * 14 13 12 16 16 O 1.21581 * 119.99885 * 354.86384 * 15 14 13 17 17 N 1.34769 * 120.00097 * 175.13410 * 15 14 13 18 18 C 1.46499 * 120.00227 * 179.72685 * 17 15 14 19 19 C 1.53000 * 109.47460 * 180.02562 * 18 17 15 20 20 C 1.53780 * 113.61602 * 274.13965 * 19 18 17 21 21 C 1.53951 * 87.01815 * 220.04717 * 20 19 18 22 22 C 1.53772 * 87.11591 * 25.36212 * 21 20 19 23 23 N 1.31933 * 120.85034 * 359.45493 * 13 12 11 24 24 H 0.97003 * 120.00567 * 359.97438 * 1 2 3 25 25 H 1.07997 * 120.43399 * 359.97438 * 10 9 7 26 26 H 1.07998 * 120.66772 * 180.02562 * 11 10 9 27 27 H 1.07993 * 120.25680 * 180.27790 * 12 11 10 28 28 H 0.96999 * 119.99891 * 5.41411 * 14 13 12 29 29 H 0.96998 * 120.00050 * 359.73083 * 17 15 14 30 30 H 1.09004 * 109.47340 * 300.00210 * 18 17 15 31 31 H 1.09003 * 109.47418 * 60.00110 * 18 17 15 32 32 H 1.09001 * 112.84676 * 45.33340 * 19 18 17 33 33 H 1.09005 * 113.60915 * 334.56446 * 20 19 18 34 34 H 1.08997 * 113.61526 * 105.46674 * 20 19 18 35 35 H 1.09002 * 113.53536 * 270.80334 * 21 20 19 36 36 H 1.09006 * 113.74362 * 139.94530 * 21 20 19 37 37 H 1.08995 * 113.61883 * 220.09462 * 22 21 20 38 38 H 1.08999 * 113.69428 * 89.19579 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 2.4888 2.0465 -1.4001 5 1 1.4388 2.6526 0.7001 6 1 3.5390 1.4401 0.6999 7 6 2.0075 -1.2126 -0.0005 8 1 3.0876 -1.2126 -0.0010 9 6 1.3009 -2.4367 -0.0005 10 6 2.0085 -3.6517 -0.0016 11 6 1.3033 -4.8415 -0.0022 12 6 -0.0828 -4.7935 0.0042 13 6 -0.7278 -3.5550 -0.0005 14 7 -2.1194 -3.5048 -0.0001 15 6 -2.7511 -2.3197 -0.1144 16 8 -2.1093 -1.2872 -0.1240 17 7 -4.0946 -2.2790 -0.2127 18 6 -4.7817 -0.9905 -0.3310 19 6 -6.2908 -1.2239 -0.4258 20 6 -6.7837 -1.4937 -1.8572 21 6 -8.0017 -0.6156 -1.5173 22 6 -7.1136 0.0746 -0.4686 23 7 -0.0357 -2.4317 -0.0001 24 1 -0.4851 0.8400 0.0004 25 1 3.0885 -3.6559 -0.0029 26 1 1.8215 -5.7891 -0.0026 27 1 -0.6589 -5.7069 0.0084 28 1 -2.6342 -4.3228 0.0827 29 1 -4.6067 -3.1027 -0.2051 30 1 -4.5631 -0.3803 0.5454 31 1 -4.4364 -0.4755 -1.2275 32 1 -6.6539 -1.9470 0.3046 33 1 -6.1405 -1.0687 -2.6278 34 1 -7.0353 -2.5379 -2.0429 35 1 -8.8334 -1.1730 -1.0864 36 1 -8.3090 0.0423 -2.3302 37 1 -7.6310 0.2945 0.4651 38 1 -6.5603 0.9294 -0.8575 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881152984.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:54 Heat of formation + Delta-G solvation = 47.445964 kcal Electronic energy + Delta-G solvation = -20911.382023 eV Core-core repulsion = 17755.425323 eV Total energy + Delta-G solvation = -3155.956701 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.59736 -38.79075 -37.49740 -34.19727 -33.54163 -32.91121 -30.23570 -29.23207 -27.64488 -25.73530 -25.41606 -23.01787 -21.72365 -21.07580 -19.96925 -19.32373 -17.92514 -17.11552 -16.24619 -15.78000 -14.95799 -14.68940 -14.48589 -14.39213 -14.21018 -13.59527 -13.36051 -12.94417 -12.77332 -12.56505 -12.13603 -12.00112 -11.84157 -11.53473 -11.10328 -10.89825 -10.69478 -10.59269 -10.46982 -10.40690 -10.32164 -9.87320 -9.62261 -9.03430 -8.96265 -8.35872 -7.89109 -7.14259 -6.87385 -6.04562 -4.33204 2.90189 3.18698 3.21327 3.23829 3.32511 3.34615 4.11980 4.30193 4.48410 4.52082 4.60070 4.72598 4.97270 5.01902 5.27637 5.42317 5.57908 5.64233 5.75053 5.77837 5.92027 6.06701 6.11794 6.16510 6.18047 6.38914 6.53847 6.68233 6.86541 6.90792 7.09007 7.30378 7.44211 7.68419 7.81699 7.87460 8.23743 8.36651 8.74591 8.87320 9.12523 9.68711 10.34059 10.56235 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.017044 B = 0.005158 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.415404 B = 5427.077809 C = 6933.894741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.648 5.648 2 C 0.056 3.944 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.426 4.426 8 H 0.082 0.918 9 C 0.271 3.729 10 C -0.307 4.307 11 C -0.036 4.036 12 C -0.359 4.359 13 C 0.387 3.613 14 N -0.674 5.674 15 C 0.662 3.338 16 O -0.464 6.464 17 N -0.759 5.759 18 C 0.155 3.845 19 C -0.123 4.123 20 C -0.136 4.136 21 C -0.143 4.143 22 C -0.131 4.131 23 N -0.471 5.471 24 H 0.271 0.729 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.090 0.910 28 H 0.394 0.606 29 H 0.383 0.617 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.226 -1.885 -1.300 14.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.266 5.266 2 C -0.173 4.173 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.457 4.457 8 H 0.100 0.900 9 C 0.146 3.854 10 C -0.331 4.331 11 C -0.060 4.060 12 C -0.385 4.385 13 C 0.147 3.853 14 N -0.323 5.323 15 C 0.360 3.640 16 O -0.328 6.328 17 N -0.419 5.419 18 C 0.031 3.969 19 C -0.141 4.141 20 C -0.173 4.173 21 C -0.181 4.181 22 C -0.169 4.169 23 N -0.190 5.190 24 H 0.083 0.917 25 H 0.114 0.886 26 H 0.113 0.887 27 H 0.108 0.892 28 H 0.227 0.773 29 H 0.215 0.785 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.110 0.890 33 H 0.102 0.898 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.237 0.162 -1.324 14.299 hybrid contribution 0.239 -1.080 0.053 1.107 sum -13.998 -0.918 -1.270 14.085 Atomic orbital electron populations 1.70354 1.05564 1.27264 1.23456 1.26192 0.95129 1.00490 0.95500 0.86553 0.80562 0.82094 0.78954 1.19723 1.20380 1.18795 1.19570 0.94007 0.89403 1.42691 0.90024 1.18400 0.87189 0.91938 0.87877 1.21619 0.98507 0.93563 1.19378 1.20539 0.93130 0.96489 0.95875 1.20436 0.94752 0.94803 1.28537 1.18353 0.82515 0.90864 0.93525 1.42577 1.05203 1.07973 1.76515 1.16468 0.81455 0.85452 0.80649 1.91383 1.62405 1.29877 1.49127 1.45278 1.05633 1.08575 1.82425 1.21018 0.88923 0.85196 1.01805 1.22802 0.94548 0.98844 0.97937 1.23018 0.97494 1.00037 0.96783 1.22841 0.96904 0.99151 0.99190 1.22861 0.97741 0.96881 0.99453 1.68706 1.06830 1.23143 1.20329 0.91677 0.88629 0.88675 0.89209 0.77328 0.78508 0.92056 0.91976 0.88979 0.89827 0.91641 0.90422 0.91542 0.91417 0.89693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.65 -18.50 8.99 55.55 0.50 -18.00 16 2 C 0.06 1.52 5.50 -17.35 -0.10 1.43 16 3 Si 0.89 19.69 29.56 -169.99 -5.02 14.66 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 7 C -0.43 -12.02 9.14 -37.74 -0.34 -12.37 16 8 H 0.08 2.15 7.85 -52.48 -0.41 1.74 16 9 C 0.27 7.83 6.55 -85.00 -0.56 7.27 16 10 C -0.31 -7.94 9.83 -38.66 -0.38 -8.32 16 11 C -0.04 -0.84 10.15 -39.39 -0.40 -1.24 16 12 C -0.36 -8.29 9.95 -38.89 -0.39 -8.67 16 13 C 0.39 9.76 7.43 -154.98 -1.15 8.61 16 14 N -0.67 -13.83 5.39 -15.79 -0.09 -13.91 16 15 C 0.66 14.02 8.52 -86.92 -0.74 13.28 16 16 O -0.46 -12.22 12.11 5.29 0.06 -12.15 16 17 N -0.76 -11.59 5.56 -65.23 -0.36 -11.95 16 18 C 0.16 2.17 5.50 -4.04 -0.02 2.15 16 19 C -0.12 -1.22 3.75 -89.81 -0.34 -1.56 16 20 C -0.14 -1.25 7.65 -25.83 -0.20 -1.45 16 21 C -0.14 -1.16 8.09 -25.83 -0.21 -1.37 16 22 C -0.13 -1.18 7.65 -25.92 -0.20 -1.38 16 23 N -0.47 -13.65 5.74 -10.26 -0.06 -13.71 16 24 H 0.27 7.29 8.29 -40.82 -0.34 6.95 16 25 H 0.10 2.29 8.06 -52.49 -0.42 1.86 16 26 H 0.10 1.88 8.06 -52.49 -0.42 1.45 16 27 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 28 H 0.39 6.21 8.71 -40.82 -0.36 5.86 16 29 H 0.38 4.53 8.49 -40.82 -0.35 4.18 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 0.97 7.88 -51.93 -0.41 0.56 16 32 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.08 0.85 7.92 -51.93 -0.41 0.44 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 LS Contribution 318.62 15.07 4.80 4.80 Total: -1.00 -33.64 318.62 -10.48 -44.12 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -5.29 Total: 9.76 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -5.02 Total: -3.61 kcal Atomic # 7 Polarization: -57.57 SS G_CDS: -0.01 Total: -57.57 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.06 Total: -12.15 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.66 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.64 -10.48 -44.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881152984.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.567 kcal (2) G-P(sol) polarization free energy of solvation -33.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds