Wall clock time and date at job start Mon Mar 30 2020 02:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86796 * 119.99836 * 2 1 4 4 H 1.48502 * 109.47426 * 270.00445 * 3 2 1 5 5 H 1.48501 * 109.47157 * 30.00382 * 3 2 1 6 6 H 1.48500 * 109.47019 * 150.00524 * 3 2 1 7 7 C 1.40022 * 120.00010 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99948 * 179.97438 * 7 2 1 9 9 C 1.41335 * 120.00341 * 359.97438 * 7 2 1 10 10 C 1.40608 * 119.78858 * 179.97438 * 9 7 2 11 11 C 1.38313 * 119.12791 * 180.02562 * 10 9 7 12 12 C 1.38691 * 118.67194 * 359.72927 * 11 10 9 13 13 C 1.39642 * 119.49349 * 0.53640 * 12 11 10 14 14 N 1.39253 * 119.57389 * 179.72162 * 13 12 11 15 15 C 1.34779 * 120.00089 * 185.40097 * 14 13 12 16 16 O 1.21581 * 119.99885 * 354.86384 * 15 14 13 17 17 N 1.34769 * 120.00097 * 175.13410 * 15 14 13 18 18 C 1.46499 * 120.00227 * 179.72685 * 17 15 14 19 19 C 1.53000 * 109.47460 * 180.02562 * 18 17 15 20 20 C 1.53780 * 113.61602 * 274.13965 * 19 18 17 21 21 C 1.53951 * 87.01815 * 220.04717 * 20 19 18 22 22 C 1.53772 * 87.11591 * 25.36212 * 21 20 19 23 23 N 1.31933 * 120.85034 * 359.45493 * 13 12 11 24 24 H 0.97003 * 120.00567 * 359.97438 * 1 2 3 25 25 H 1.07997 * 120.43399 * 359.97438 * 10 9 7 26 26 H 1.07998 * 120.66772 * 180.02562 * 11 10 9 27 27 H 1.07993 * 120.25680 * 180.27790 * 12 11 10 28 28 H 0.96999 * 119.99891 * 5.41411 * 14 13 12 29 29 H 0.96998 * 120.00050 * 359.73083 * 17 15 14 30 30 H 1.09004 * 109.47340 * 300.00210 * 18 17 15 31 31 H 1.09003 * 109.47418 * 60.00110 * 18 17 15 32 32 H 1.09001 * 112.84676 * 45.33340 * 19 18 17 33 33 H 1.09005 * 113.60915 * 334.56446 * 20 19 18 34 34 H 1.08997 * 113.61526 * 105.46674 * 20 19 18 35 35 H 1.09002 * 113.53536 * 270.80334 * 21 20 19 36 36 H 1.09006 * 113.74362 * 139.94530 * 21 20 19 37 37 H 1.08995 * 113.61883 * 220.09462 * 22 21 20 38 38 H 1.08999 * 113.69428 * 89.19579 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 2.4888 2.0465 -1.4001 5 1 1.4388 2.6526 0.7001 6 1 3.5390 1.4401 0.6999 7 6 2.0075 -1.2126 -0.0005 8 1 3.0876 -1.2126 -0.0010 9 6 1.3009 -2.4367 -0.0005 10 6 2.0085 -3.6517 -0.0016 11 6 1.3033 -4.8415 -0.0022 12 6 -0.0828 -4.7935 0.0042 13 6 -0.7278 -3.5550 -0.0005 14 7 -2.1194 -3.5048 -0.0001 15 6 -2.7511 -2.3197 -0.1144 16 8 -2.1093 -1.2872 -0.1240 17 7 -4.0946 -2.2790 -0.2127 18 6 -4.7817 -0.9905 -0.3310 19 6 -6.2908 -1.2239 -0.4258 20 6 -6.7837 -1.4937 -1.8572 21 6 -8.0017 -0.6156 -1.5173 22 6 -7.1136 0.0746 -0.4686 23 7 -0.0357 -2.4317 -0.0001 24 1 -0.4851 0.8400 0.0004 25 1 3.0885 -3.6559 -0.0029 26 1 1.8215 -5.7891 -0.0026 27 1 -0.6589 -5.7069 0.0084 28 1 -2.6342 -4.3228 0.0827 29 1 -4.6067 -3.1027 -0.2051 30 1 -4.5631 -0.3803 0.5454 31 1 -4.4364 -0.4755 -1.2275 32 1 -6.6539 -1.9470 0.3046 33 1 -6.1405 -1.0687 -2.6278 34 1 -7.0353 -2.5379 -2.0429 35 1 -8.8334 -1.1730 -1.0864 36 1 -8.3090 0.0423 -2.3302 37 1 -7.6310 0.2945 0.4651 38 1 -6.5603 0.9294 -0.8575 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881152984.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:53 Heat of formation + Delta-G solvation = 25.882195 kcal Electronic energy + Delta-G solvation = -20912.317099 eV Core-core repulsion = 17755.425323 eV Total energy + Delta-G solvation = -3156.891776 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.14844 -39.95464 -39.16656 -35.96519 -35.07446 -34.81012 -32.19104 -31.02786 -28.93023 -27.35499 -26.46020 -24.30007 -23.36627 -22.86828 -21.47619 -20.35084 -19.69060 -18.71527 -18.04703 -16.85560 -16.51347 -16.26095 -16.14407 -15.79117 -15.60863 -15.29317 -14.72486 -14.59819 -14.47807 -13.83839 -13.69006 -13.31326 -12.90197 -12.80469 -12.71246 -12.54083 -12.53746 -12.29933 -11.75600 -11.50233 -11.46583 -11.25629 -11.11080 -10.85072 -10.81217 -9.90089 -9.78656 -9.08970 -8.76341 -8.00487 -6.39905 0.98295 1.30035 1.39467 1.51938 1.54627 1.85435 2.27583 2.58934 3.05581 3.38772 3.72011 3.76669 3.88741 4.02381 4.09246 4.35923 4.39437 4.57689 4.72505 4.79727 4.87818 4.90208 4.90755 4.98203 5.03755 5.08452 5.12875 5.13771 5.29082 5.35402 5.60656 5.68567 5.77056 5.88248 5.94010 6.06154 6.34137 6.44572 6.83922 7.09182 7.30194 8.04545 8.40464 8.60206 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.017044 B = 0.005158 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.415404 B = 5427.077809 C = 6933.894741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.686 5.686 2 C 0.009 3.991 3 Si 0.974 3.026 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.255 1.255 7 C -0.468 4.468 8 H 0.086 0.914 9 C 0.237 3.763 10 C -0.331 4.331 11 C -0.034 4.034 12 C -0.346 4.346 13 C 0.363 3.637 14 N -0.662 5.662 15 C 0.654 3.346 16 O -0.519 6.519 17 N -0.734 5.734 18 C 0.158 3.842 19 C -0.115 4.115 20 C -0.137 4.137 21 C -0.133 4.133 22 C -0.134 4.134 23 N -0.508 5.508 24 H 0.268 0.732 25 H 0.104 0.896 26 H 0.138 0.862 27 H 0.133 0.867 28 H 0.417 0.583 29 H 0.405 0.595 30 H 0.041 0.959 31 H 0.040 0.960 32 H 0.111 0.889 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.694 -3.364 -1.278 16.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.305 5.305 2 C -0.217 4.217 3 Si 0.795 3.205 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.178 1.178 7 C -0.499 4.499 8 H 0.104 0.896 9 C 0.111 3.889 10 C -0.354 4.354 11 C -0.058 4.058 12 C -0.371 4.371 13 C 0.124 3.876 14 N -0.312 5.312 15 C 0.352 3.648 16 O -0.387 6.387 17 N -0.395 5.395 18 C 0.033 3.967 19 C -0.133 4.133 20 C -0.175 4.175 21 C -0.170 4.170 22 C -0.172 4.172 23 N -0.227 5.227 24 H 0.079 0.921 25 H 0.123 0.877 26 H 0.156 0.844 27 H 0.150 0.850 28 H 0.254 0.746 29 H 0.240 0.760 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.129 0.871 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.113 0.887 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -15.777 -1.393 -1.302 15.892 hybrid contribution 0.610 -0.817 0.043 1.020 sum -15.167 -2.210 -1.259 15.378 Atomic orbital electron populations 1.70573 1.07186 1.27779 1.24949 1.27063 0.96011 1.04021 0.94557 0.85345 0.79156 0.76900 0.79115 1.19114 1.19903 1.17811 1.19905 0.94429 0.90501 1.45025 0.89608 1.18897 0.87938 0.93436 0.88631 1.21812 0.99214 0.93847 1.20547 1.21031 0.93486 0.97338 0.93928 1.20921 0.95164 0.95527 1.25513 1.18872 0.84247 0.91105 0.93416 1.42406 1.03891 1.09024 1.75920 1.16802 0.82926 0.84889 0.80205 1.91374 1.64123 1.31726 1.51454 1.45001 1.03676 1.10184 1.80601 1.21079 0.91601 0.84163 0.99857 1.22812 0.91154 1.00170 0.99189 1.23009 0.97840 1.01026 0.95584 1.22817 0.96651 0.98707 0.98832 1.22894 0.97742 0.96112 1.00451 1.68661 1.07255 1.25418 1.21398 0.92131 0.87736 0.84389 0.84964 0.74561 0.75973 0.94011 0.94149 0.87135 0.91331 0.90373 0.88728 0.91058 0.90319 0.90696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -41.13 8.99 21.84 0.20 -40.94 16 2 C 0.01 0.51 5.50 85.29 0.47 0.98 16 3 Si 0.97 41.99 29.56 68.60 2.03 44.02 16 4 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 5 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 6 H -0.25 -10.43 7.11 99.48 0.71 -9.73 16 7 C -0.47 -27.47 9.14 23.47 0.21 -27.26 16 8 H 0.09 4.71 7.85 -2.91 -0.02 4.68 16 9 C 0.24 14.11 6.55 40.20 0.26 14.37 16 10 C -0.33 -17.17 9.83 22.87 0.22 -16.94 16 11 C -0.03 -1.49 10.15 22.40 0.23 -1.27 16 12 C -0.35 -15.09 9.95 22.72 0.23 -14.86 16 13 C 0.36 18.22 7.43 133.24 0.99 19.21 16 14 N -0.66 -26.61 5.39 -322.13 -1.74 -28.34 16 15 C 0.65 28.03 8.52 179.06 1.53 29.55 16 16 O -0.52 -28.54 12.11 -3.97 -0.05 -28.59 16 17 N -0.73 -21.99 5.56 -478.54 -2.66 -24.65 16 18 C 0.16 4.45 5.50 86.38 0.47 4.92 16 19 C -0.11 -2.10 3.75 -10.27 -0.04 -2.14 16 20 C -0.14 -2.28 7.65 31.18 0.24 -2.04 16 21 C -0.13 -1.81 8.09 31.18 0.25 -1.56 16 22 C -0.13 -2.21 7.65 31.12 0.24 -1.97 16 23 N -0.51 -30.29 5.74 -186.37 -1.07 -31.36 16 24 H 0.27 15.22 8.29 -92.71 -0.77 14.45 16 25 H 0.10 5.04 8.06 -2.91 -0.02 5.01 16 26 H 0.14 4.87 8.06 -2.91 -0.02 4.85 16 27 H 0.13 4.58 8.06 -2.91 -0.02 4.56 16 28 H 0.42 12.16 8.71 -92.71 -0.81 11.35 16 29 H 0.40 8.68 8.49 -92.71 -0.79 7.90 16 30 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.04 1.32 7.88 -2.39 -0.02 1.30 16 32 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.07 1.36 7.92 -2.38 -0.02 1.34 16 34 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 37 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.07 1.38 8.10 -2.39 -0.02 1.37 16 Total: -1.00 -77.32 318.62 1.50 -75.81 By element: Atomic # 1 Polarization: 33.57 SS G_CDS: -0.51 Total: 33.06 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: 5.30 Total: 0.99 kcal Atomic # 7 Polarization: -120.02 SS G_CDS: -5.27 Total: -125.29 kcal Atomic # 8 Polarization: -28.54 SS G_CDS: -0.05 Total: -28.59 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Total: -77.32 1.50 -75.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881152984.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.692 kcal (2) G-P(sol) polarization free energy of solvation -77.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds