Wall clock time and date at job start Mon Mar 30 2020 02:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 120.00072 * 2 1 4 4 H 1.48496 * 109.46960 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47072 * 300.00179 * 3 2 1 6 6 H 1.48509 * 109.46711 * 59.99776 * 3 2 1 7 7 C 1.37876 * 119.99960 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00331 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99848 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.47279 * 179.97438 * 9 7 2 11 11 C 1.39183 * 120.00063 * 179.97438 * 10 9 7 12 12 C 1.39417 * 120.83580 * 0.02562 * 11 10 9 13 13 C 1.38227 * 119.26598 * 179.97438 * 12 11 10 14 14 N 1.31654 * 120.99636 * 359.97438 * 13 12 11 15 15 C 1.32829 * 121.82648 * 0.02562 * 14 13 12 16 16 C 1.48184 * 119.69267 * 179.97438 * 15 14 13 17 17 O 1.21509 * 120.00133 * 179.97438 * 16 15 14 18 18 N 1.34781 * 119.99289 * 359.97438 * 16 15 14 19 19 C 1.47015 * 125.65469 * 359.69932 * 18 16 15 20 20 C 1.54311 * 107.27686 * 180.96669 * 19 18 16 21 21 C 1.55151 * 102.86435 * 22.52056 * 20 19 18 22 22 C 1.47427 * 125.64288 * 179.97438 * 18 16 15 23 23 C 1.39044 * 120.61950 * 359.97438 * 15 14 13 24 24 H 0.97000 * 119.99736 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.47239 * 59.99483 * 9 7 2 26 26 H 1.09004 * 109.47312 * 299.99790 * 9 7 2 27 27 H 0.97005 * 119.99561 * 359.97438 * 10 9 7 28 28 H 1.08002 * 120.36836 * 359.97438 * 12 11 10 29 29 H 1.07999 * 119.50273 * 180.02562 * 13 12 11 30 30 H 1.09005 * 109.88170 * 300.50990 * 19 18 16 31 31 H 1.09004 * 109.88335 * 61.66892 * 19 18 16 32 32 H 1.09000 * 110.92409 * 264.10613 * 20 19 18 33 33 H 1.09003 * 110.59218 * 140.78833 * 20 19 18 34 34 H 1.09001 * 111.00484 * 206.22873 * 21 20 19 35 35 H 1.09004 * 110.99971 * 82.38094 * 21 20 19 36 36 H 1.08999 * 110.37265 * 274.68073 * 22 18 16 37 37 H 1.09005 * 110.36743 * 36.89615 * 22 18 16 38 38 H 1.07998 * 120.51774 * 180.02562 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7390 -4.9249 0.0011 12 6 0.3721 -5.1996 0.0011 13 6 -0.0528 -6.5149 0.0011 14 7 0.8126 -7.5070 0.0006 15 6 2.1235 -7.2930 0.0005 16 6 3.0554 -8.4451 0.0005 17 8 4.2557 -8.2558 0.0000 18 7 2.5715 -9.7031 0.0011 19 6 1.1489 -10.0740 0.0080 20 6 1.0773 -11.6153 0.0308 21 6 2.4575 -12.0166 0.6147 22 6 3.3812 -10.9351 0.0006 23 6 2.6297 -5.9979 0.0005 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5570 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 3.1567 -3.4354 0.0002 28 1 -0.3468 -4.3936 0.0011 29 1 -1.1108 -6.7320 0.0007 30 1 0.6636 -9.6653 0.8944 31 1 0.6627 -9.6954 -0.8911 32 1 0.9537 -12.0141 -0.9761 33 1 0.2704 -11.9520 0.6817 34 1 2.7478 -13.0131 0.2817 35 1 2.4539 -11.9558 1.7030 36 1 3.6585 -11.2065 -1.0180 37 1 4.2730 -10.8031 0.6134 38 1 3.6959 -5.8258 0.0001 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882274358.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:54 Heat of formation + Delta-G solvation = 1.401278 kcal Electronic energy + Delta-G solvation = -20330.619390 eV Core-core repulsion = 17172.666042 eV Total energy + Delta-G solvation = -3157.953348 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.39945 -39.07193 -37.25770 -35.77319 -32.96550 -31.89090 -30.84515 -30.11240 -28.95805 -26.83976 -24.97004 -23.17398 -22.69859 -21.73305 -21.20527 -19.45172 -17.85901 -16.70312 -16.67592 -16.20961 -15.45376 -15.30499 -14.90358 -14.65485 -14.46674 -13.70949 -13.59198 -13.48203 -13.36413 -13.24175 -12.83952 -12.54951 -12.32293 -12.22834 -11.48968 -11.36230 -11.22303 -11.09994 -10.97667 -10.90292 -10.33282 -10.20702 -10.06028 -9.51765 -9.07689 -8.88511 -8.69709 -8.54762 -7.08579 -6.31575 -4.37505 1.11392 1.92144 2.96847 3.05155 3.16551 3.24543 3.28091 4.09192 4.23403 4.33609 4.35415 4.47625 4.59798 4.74942 5.06112 5.06350 5.20264 5.23657 5.47832 5.52399 5.56139 5.62448 5.64668 5.82651 5.85781 5.94892 6.03822 6.06127 6.22411 6.39226 6.53550 6.84973 7.05774 7.23974 7.49338 7.50444 7.79037 8.00815 8.07092 8.41178 8.42678 8.73044 9.29582 10.78941 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.046548 B = 0.003175 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.387266 B = 8816.028043 C = 9365.634700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.543 4.543 8 H 0.064 0.936 9 C 0.247 3.753 10 N -0.710 5.710 11 C 0.257 3.743 12 C -0.234 4.234 13 C 0.131 3.869 14 N -0.518 5.518 15 C 0.109 3.891 16 C 0.590 3.410 17 O -0.540 6.540 18 N -0.606 5.606 19 C 0.121 3.879 20 C -0.139 4.139 21 C -0.134 4.134 22 C 0.104 3.896 23 C -0.199 4.199 24 H 0.267 0.733 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.397 0.603 28 H 0.139 0.861 29 H 0.154 0.846 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.106 -20.385 0.297 20.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.581 4.581 8 H 0.083 0.917 9 C 0.126 3.874 10 N -0.332 5.332 11 C 0.137 3.863 12 C -0.260 4.260 13 C -0.026 4.026 14 N -0.236 5.236 15 C -0.028 4.028 16 C 0.378 3.622 17 O -0.417 6.417 18 N -0.339 5.339 19 C -0.002 4.002 20 C -0.177 4.177 21 C -0.172 4.172 22 C -0.019 4.019 23 C -0.227 4.227 24 H 0.076 0.924 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.231 0.769 28 H 0.156 0.844 29 H 0.171 0.829 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.016 -20.714 0.291 20.717 hybrid contribution 0.914 2.019 -0.023 2.216 sum 0.898 -18.696 0.268 18.719 Atomic orbital electron populations 1.69944 1.06096 1.27460 1.49021 1.24928 0.94971 0.99561 0.94426 0.86324 0.79938 0.82662 0.77844 1.19566 1.20679 1.20681 1.21200 0.93499 0.90210 1.53176 0.91746 1.19256 0.88603 0.82497 0.97029 1.45579 1.10345 1.02218 1.75015 1.18178 0.92755 0.86079 0.89247 1.21860 0.94781 0.98874 1.10520 1.22328 0.98774 0.87753 0.93775 1.67706 1.01580 1.35897 1.18367 1.20362 0.90692 0.91561 1.00188 1.17733 0.87014 0.81300 0.76122 1.90753 1.15165 1.84804 1.50999 1.48259 1.08505 1.04678 1.72485 1.22070 0.81295 0.93080 1.03750 1.22777 0.97581 0.95652 1.01732 1.22783 0.95164 0.98295 1.00952 1.22239 0.95064 0.83585 1.00992 1.21409 1.00619 0.91126 1.09568 0.92368 0.95666 0.95654 0.76865 0.84353 0.82886 0.90314 0.90468 0.90816 0.90135 0.90003 0.90633 0.91498 0.90460 0.84581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.71 13.29 55.43 0.74 -23.97 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.91 20.44 29.54 -169.99 -5.02 15.42 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.54 -14.23 9.28 -34.44 -0.32 -14.55 16 8 H 0.06 1.64 7.60 -52.49 -0.40 1.24 16 9 C 0.25 5.96 4.70 -5.19 -0.02 5.93 16 10 N -0.71 -14.51 5.71 -59.65 -0.34 -14.85 16 11 C 0.26 4.82 6.69 -83.63 -0.56 4.26 16 12 C -0.23 -4.05 9.39 -39.15 -0.37 -4.42 16 13 C 0.13 1.94 11.17 -17.63 -0.20 1.75 16 14 N -0.52 -8.05 6.85 -9.89 -0.07 -8.11 16 15 C 0.11 1.86 6.72 -83.05 -0.56 1.30 16 16 C 0.59 9.94 7.84 -12.17 -0.10 9.84 16 17 O -0.54 -10.44 16.57 5.36 0.09 -10.35 16 18 N -0.61 -8.13 3.33 -171.50 -0.57 -8.70 16 19 C 0.12 1.31 5.39 -3.07 -0.02 1.29 16 20 C -0.14 -1.04 6.95 -24.91 -0.17 -1.21 16 21 C -0.13 -0.99 7.08 -24.58 -0.17 -1.16 16 22 C 0.10 1.09 6.91 -2.52 -0.02 1.07 16 23 C -0.20 -3.58 9.52 -38.83 -0.37 -3.95 16 24 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 25 H 0.03 0.65 7.99 -51.93 -0.41 0.24 16 26 H 0.03 0.65 7.99 -51.93 -0.41 0.24 16 27 H 0.40 7.65 8.35 -40.82 -0.34 7.31 16 28 H 0.14 2.45 6.88 -52.49 -0.36 2.09 16 29 H 0.15 1.74 8.06 -52.49 -0.42 1.32 16 30 H 0.08 0.91 7.43 -51.93 -0.39 0.53 16 31 H 0.08 0.89 7.52 -51.93 -0.39 0.50 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.86 8.03 -51.93 -0.42 0.44 16 38 H 0.14 2.40 7.64 -52.49 -0.40 2.00 16 LS Contribution 320.20 15.07 4.83 4.83 Total: -1.00 -29.79 320.20 -8.51 -38.31 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -5.20 Total: 5.64 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: -2.97 Total: 1.80 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: -0.24 Total: -55.64 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.09 Total: -10.35 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.79 -8.51 -38.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882274358.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.707 kcal (2) G-P(sol) polarization free energy of solvation -29.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds