Wall clock time and date at job start Mon Mar 30 2020 02:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30645 * 1 3 3 Si 1.86797 * 120.00280 * 2 1 4 4 H 1.48506 * 109.46961 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47033 * 300.00221 * 3 2 1 6 6 H 1.48503 * 109.47061 * 60.00478 * 3 2 1 7 7 C 1.40115 * 119.99490 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99971 * 179.97438 * 7 2 1 9 9 C 1.46227 * 120.00072 * 359.97438 * 7 2 1 10 10 O 1.21716 * 120.00260 * 0.02562 * 9 7 2 11 11 N 1.34779 * 119.99758 * 179.97438 * 9 7 2 12 12 C 1.39279 * 119.99647 * 184.67536 * 11 9 7 13 13 C 1.39715 * 120.82649 * 145.05992 * 12 11 9 14 14 C 1.37765 * 119.23089 * 179.97438 * 13 12 11 15 15 N 1.32066 * 120.93644 * 0.02562 * 14 13 12 16 16 C 1.32493 * 121.81946 * 359.97438 * 15 14 13 17 17 N 1.39034 * 119.66740 * 180.02562 * 16 15 14 18 18 C 1.46842 * 111.00137 * 124.20690 * 17 16 15 19 19 C 1.53043 * 109.52404 * 174.16266 * 18 17 16 20 20 C 1.53117 * 109.27510 * 59.18070 * 19 18 17 21 21 C 1.53122 * 109.16402 * 302.34620 * 20 19 18 22 22 C 1.46858 * 110.99442 * 0.02562 * 17 16 15 23 23 C 1.38868 * 120.67129 * 359.74394 * 16 15 14 24 24 H 0.97001 * 119.99698 * 359.97438 * 1 2 3 25 25 H 0.96991 * 120.00339 * 4.67941 * 11 9 7 26 26 H 1.08005 * 120.39003 * 359.97438 * 13 12 11 27 27 H 1.08001 * 119.52939 * 180.02562 * 14 13 12 28 28 H 1.08996 * 109.46672 * 294.17931 * 18 17 16 29 29 H 1.08996 * 109.46181 * 54.15013 * 18 17 16 30 30 H 1.08998 * 109.49959 * 299.24377 * 19 18 17 31 31 H 1.08999 * 109.50571 * 179.12567 * 19 18 17 32 32 H 1.09005 * 109.51970 * 182.44160 * 20 19 18 33 33 H 1.09000 * 109.57525 * 62.28847 * 20 19 18 34 34 H 1.09003 * 109.50451 * 297.71374 * 21 20 19 35 35 H 1.09001 * 109.53850 * 177.61751 * 21 20 19 36 36 H 1.08996 * 109.46139 * 305.85496 * 22 17 16 37 37 H 1.08998 * 109.45805 * 65.83669 * 22 17 16 38 38 H 1.08003 * 120.49814 * 180.26288 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 3.7005 1.3462 -0.0006 5 1 1.8818 2.3964 -1.2125 6 1 1.8819 2.3963 1.2126 7 6 2.0069 -1.2135 -0.0005 8 1 3.0870 -1.2136 -0.0010 9 6 1.2757 -2.4798 -0.0005 10 8 0.0585 -2.4798 -0.0005 11 7 1.9495 -3.6471 -0.0016 12 6 1.2564 -4.8511 -0.0999 13 6 1.7984 -5.9344 -0.7961 14 6 1.0846 -7.1103 -0.8722 15 7 -0.0994 -7.2242 -0.2984 16 6 -0.6503 -6.2225 0.3713 17 7 -1.8991 -6.3917 0.9585 18 6 -1.8494 -6.0950 2.3958 19 6 -3.2635 -6.1496 2.9786 20 6 -3.8524 -7.5438 2.7463 21 6 -3.8481 -7.8476 1.2455 22 6 -2.4169 -7.7439 0.7136 23 6 0.0095 -5.0071 0.4977 24 1 -0.4850 0.8401 0.0004 25 1 2.9171 -3.6486 0.0662 26 1 2.7658 -5.8511 -1.2692 27 1 1.4992 -7.9509 -1.4088 28 1 -1.2214 -6.8313 2.8972 29 1 -1.4326 -5.0992 2.5469 30 1 -3.8886 -5.4040 2.4872 31 1 -3.2244 -5.9446 4.0484 32 1 -4.8755 -7.5741 3.1212 33 1 -3.2505 -8.2864 3.2700 34 1 -4.4825 -7.1287 0.7268 35 1 -4.2270 -8.8555 1.0765 36 1 -2.4123 -7.9460 -0.3575 37 1 -1.7861 -8.4721 1.2233 38 1 -0.4403 -4.1938 1.0478 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888573263.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:58 Heat of formation + Delta-G solvation = -0.422884 kcal Electronic energy + Delta-G solvation = -21091.295829 eV Core-core repulsion = 17933.263379 eV Total energy + Delta-G solvation = -3158.032450 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.30206 -38.52317 -37.22529 -34.12760 -33.27607 -32.51318 -30.99835 -29.81014 -29.14917 -26.46920 -24.48838 -23.69109 -22.18081 -21.59469 -20.08120 -19.44829 -17.79942 -17.11642 -15.93156 -15.48103 -15.28055 -15.05719 -14.62604 -14.35444 -14.23367 -13.91160 -13.64273 -13.23872 -13.06726 -12.83330 -12.58646 -12.35137 -12.02698 -11.44077 -11.35099 -11.17112 -11.12347 -10.80421 -10.71272 -10.39250 -10.38471 -10.35403 -9.83866 -9.40171 -9.09133 -8.99335 -7.82293 -7.57919 -7.49646 -6.40003 -4.88498 1.75761 2.01369 3.03060 3.11427 3.15819 3.81188 3.94234 4.25827 4.43482 4.58458 4.81427 4.90980 4.96866 5.03474 5.32756 5.45804 5.51678 5.61985 5.67596 5.68449 5.70731 5.81291 5.85514 5.94399 5.97647 6.05383 6.18686 6.23157 6.34953 6.40607 6.49082 6.80432 6.99477 7.10611 7.23624 7.62761 7.66163 7.93891 8.07798 8.58285 8.79351 9.11259 10.30767 10.50282 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.022748 B = 0.004650 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.596909 B = 6019.874789 C = 6987.371977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.757 5.757 2 C 0.086 3.914 3 Si 0.914 3.086 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.073 0.927 9 C 0.539 3.461 10 O -0.553 6.553 11 N -0.694 5.694 12 C 0.244 3.756 13 C -0.252 4.252 14 C 0.131 3.869 15 N -0.554 5.554 16 C 0.317 3.683 17 N -0.473 5.473 18 C 0.060 3.940 19 C -0.118 4.118 20 C -0.121 4.121 21 C -0.122 4.122 22 C 0.071 3.929 23 C -0.194 4.194 24 H 0.272 0.728 25 H 0.396 0.604 26 H 0.126 0.874 27 H 0.147 0.853 28 H 0.039 0.961 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.083 0.917 37 H 0.043 0.957 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.313 -11.998 3.902 12.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C -0.135 4.135 3 Si 0.738 3.262 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.573 4.573 8 H 0.091 0.909 9 C 0.346 3.654 10 O -0.434 6.434 11 N -0.337 5.337 12 C 0.136 3.864 13 C -0.277 4.277 14 C -0.026 4.026 15 N -0.272 5.272 16 C 0.087 3.913 17 N -0.190 5.190 18 C -0.066 4.066 19 C -0.156 4.156 20 C -0.159 4.159 21 C -0.160 4.160 22 C -0.056 4.056 23 C -0.219 4.219 24 H 0.083 0.917 25 H 0.230 0.770 26 H 0.144 0.856 27 H 0.165 0.835 28 H 0.058 0.942 29 H 0.105 0.895 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.102 0.898 37 H 0.061 0.939 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -3.193 -12.201 3.664 13.133 hybrid contribution 1.941 1.159 0.164 2.266 sum -1.252 -11.042 3.828 11.753 Atomic orbital electron populations 1.69996 1.07169 1.27829 1.33493 1.25750 0.94719 1.00566 0.92502 0.86211 0.80431 0.81154 0.78438 1.18610 1.19949 1.19934 1.20884 0.93857 0.88813 1.53709 0.90850 1.18496 0.87598 0.82009 0.77287 1.90648 1.13571 1.85749 1.53402 1.44172 1.09861 1.04079 1.75581 1.18015 0.92200 0.86412 0.89819 1.21744 1.03871 0.95672 1.06400 1.22011 0.89395 0.95996 0.95167 1.67464 1.12988 1.31349 1.15375 1.19555 0.88106 0.89735 0.93941 1.59032 1.19487 1.27619 1.12892 1.22227 0.97489 1.02068 0.84802 1.21618 0.95821 0.97723 1.00406 1.21602 1.00761 0.97045 0.96503 1.21686 0.96907 1.01535 0.95831 1.21897 0.94257 0.87384 1.02099 1.21761 0.96940 0.97618 1.05630 0.91675 0.77005 0.85604 0.83547 0.94246 0.89467 0.90642 0.91181 0.91873 0.92340 0.91106 0.91494 0.89829 0.93872 0.82948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.72 11.83 55.55 0.66 -21.07 16 2 C 0.09 2.29 5.50 -17.35 -0.10 2.19 16 3 Si 0.91 19.19 29.56 -169.99 -5.02 14.16 16 4 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 5 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 6 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.54 -14.38 9.54 -35.67 -0.34 -14.72 16 8 H 0.07 1.78 7.85 -52.48 -0.41 1.37 16 9 C 0.54 14.73 7.60 -13.05 -0.10 14.63 16 10 O -0.55 -17.06 12.52 5.17 0.06 -17.00 16 11 N -0.69 -15.34 5.33 -11.05 -0.06 -15.40 16 12 C 0.24 5.14 6.33 -83.59 -0.53 4.61 16 13 C -0.25 -4.38 10.06 -39.20 -0.39 -4.77 16 14 C 0.13 2.16 11.16 -17.62 -0.20 1.96 16 15 N -0.55 -10.17 8.68 -12.52 -0.11 -10.28 16 16 C 0.32 6.23 6.41 -155.01 -0.99 5.23 16 17 N -0.47 -8.23 4.68 -173.28 -0.81 -9.04 16 18 C 0.06 0.92 5.24 -3.83 -0.02 0.90 16 19 C -0.12 -1.46 6.09 -26.65 -0.16 -1.62 16 20 C -0.12 -1.31 6.00 -26.61 -0.16 -1.47 16 21 C -0.12 -1.43 6.09 -26.65 -0.16 -1.59 16 22 C 0.07 1.04 4.65 -3.82 -0.02 1.02 16 23 C -0.19 -4.26 7.84 -39.01 -0.31 -4.57 16 24 H 0.27 7.06 8.29 -40.82 -0.34 6.72 16 25 H 0.40 7.38 8.80 -40.82 -0.36 7.02 16 26 H 0.13 1.84 8.06 -52.48 -0.42 1.41 16 27 H 0.15 1.85 8.06 -52.49 -0.42 1.43 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.09 1.46 6.65 -51.93 -0.35 1.12 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.08 1.30 7.70 -51.93 -0.40 0.90 16 37 H 0.04 0.63 8.11 -51.93 -0.42 0.21 16 38 H 0.15 3.79 5.39 -52.48 -0.28 3.51 16 LS Contribution 312.34 15.07 4.71 4.71 Total: -1.00 -32.54 312.34 -9.21 -41.76 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -5.16 Total: 10.34 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: -3.48 Total: 1.80 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: -0.32 Total: -55.78 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: 0.06 Total: -17.00 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.02 Total: 14.16 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.54 -9.21 -41.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888573263.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.332 kcal (2) G-P(sol) polarization free energy of solvation -32.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds