Wall clock time and date at job start Mon Mar 30 2020 02:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30645 * 1 3 3 Si 1.86797 * 120.00280 * 2 1 4 4 H 1.48506 * 109.46961 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47033 * 300.00221 * 3 2 1 6 6 H 1.48503 * 109.47061 * 60.00478 * 3 2 1 7 7 C 1.40115 * 119.99490 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99971 * 179.97438 * 7 2 1 9 9 C 1.46227 * 120.00072 * 359.97438 * 7 2 1 10 10 O 1.21716 * 120.00260 * 0.02562 * 9 7 2 11 11 N 1.34779 * 119.99758 * 179.97438 * 9 7 2 12 12 C 1.39279 * 119.99647 * 184.67536 * 11 9 7 13 13 C 1.39715 * 120.82649 * 145.05992 * 12 11 9 14 14 C 1.37765 * 119.23089 * 179.97438 * 13 12 11 15 15 N 1.32066 * 120.93644 * 0.02562 * 14 13 12 16 16 C 1.32493 * 121.81946 * 359.97438 * 15 14 13 17 17 N 1.39034 * 119.66740 * 180.02562 * 16 15 14 18 18 C 1.46842 * 111.00137 * 124.20690 * 17 16 15 19 19 C 1.53043 * 109.52404 * 174.16266 * 18 17 16 20 20 C 1.53117 * 109.27510 * 59.18070 * 19 18 17 21 21 C 1.53122 * 109.16402 * 302.34620 * 20 19 18 22 22 C 1.46858 * 110.99442 * 0.02562 * 17 16 15 23 23 C 1.38868 * 120.67129 * 359.74394 * 16 15 14 24 24 H 0.97001 * 119.99698 * 359.97438 * 1 2 3 25 25 H 0.96991 * 120.00339 * 4.67941 * 11 9 7 26 26 H 1.08005 * 120.39003 * 359.97438 * 13 12 11 27 27 H 1.08001 * 119.52939 * 180.02562 * 14 13 12 28 28 H 1.08996 * 109.46672 * 294.17931 * 18 17 16 29 29 H 1.08996 * 109.46181 * 54.15013 * 18 17 16 30 30 H 1.08998 * 109.49959 * 299.24377 * 19 18 17 31 31 H 1.08999 * 109.50571 * 179.12567 * 19 18 17 32 32 H 1.09005 * 109.51970 * 182.44160 * 20 19 18 33 33 H 1.09000 * 109.57525 * 62.28847 * 20 19 18 34 34 H 1.09003 * 109.50451 * 297.71374 * 21 20 19 35 35 H 1.09001 * 109.53850 * 177.61751 * 21 20 19 36 36 H 1.08996 * 109.46139 * 305.85496 * 22 17 16 37 37 H 1.08998 * 109.45805 * 65.83669 * 22 17 16 38 38 H 1.08003 * 120.49814 * 180.26288 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 3.7005 1.3462 -0.0006 5 1 1.8818 2.3964 -1.2125 6 1 1.8819 2.3963 1.2126 7 6 2.0069 -1.2135 -0.0005 8 1 3.0870 -1.2136 -0.0010 9 6 1.2757 -2.4798 -0.0005 10 8 0.0585 -2.4798 -0.0005 11 7 1.9495 -3.6471 -0.0016 12 6 1.2564 -4.8511 -0.0999 13 6 1.7984 -5.9344 -0.7961 14 6 1.0846 -7.1103 -0.8722 15 7 -0.0994 -7.2242 -0.2984 16 6 -0.6503 -6.2225 0.3713 17 7 -1.8991 -6.3917 0.9585 18 6 -1.8494 -6.0950 2.3958 19 6 -3.2635 -6.1496 2.9786 20 6 -3.8524 -7.5438 2.7463 21 6 -3.8481 -7.8476 1.2455 22 6 -2.4169 -7.7439 0.7136 23 6 0.0095 -5.0071 0.4977 24 1 -0.4850 0.8401 0.0004 25 1 2.9171 -3.6486 0.0662 26 1 2.7658 -5.8511 -1.2692 27 1 1.4992 -7.9509 -1.4088 28 1 -1.2214 -6.8313 2.8972 29 1 -1.4326 -5.0992 2.5469 30 1 -3.8886 -5.4040 2.4872 31 1 -3.2244 -5.9446 4.0484 32 1 -4.8755 -7.5741 3.1212 33 1 -3.2505 -8.2864 3.2700 34 1 -4.4825 -7.1287 0.7268 35 1 -4.2270 -8.8555 1.0765 36 1 -2.4123 -7.9460 -0.3575 37 1 -1.7861 -8.4721 1.2233 38 1 -0.4403 -4.1938 1.0478 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888573263.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:57 Heat of formation + Delta-G solvation = -22.763268 kcal Electronic energy + Delta-G solvation = -21092.264580 eV Core-core repulsion = 17933.263379 eV Total energy + Delta-G solvation = -3159.001201 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.76058 -40.07786 -38.85598 -35.84276 -34.74703 -34.41534 -32.28001 -31.35076 -30.53121 -28.46789 -25.71540 -25.08591 -23.58661 -23.04173 -21.72452 -20.65558 -19.64427 -18.65931 -17.76116 -17.12999 -16.72161 -16.56866 -16.01896 -15.90192 -15.53775 -15.14308 -15.10108 -14.56332 -14.51235 -14.37840 -14.05579 -13.98393 -13.24675 -13.14282 -12.97175 -12.84914 -12.74117 -12.21894 -12.00933 -11.77775 -11.53500 -11.44940 -11.41901 -10.99766 -10.76651 -10.62671 -9.84343 -9.28674 -8.99087 -8.40078 -6.99532 0.28264 0.44045 1.38670 1.39290 1.57615 2.18215 2.33959 2.50170 2.75811 2.99969 3.51376 3.62099 3.83425 3.91984 3.97718 4.19700 4.24689 4.28968 4.32533 4.39471 4.57125 4.59345 4.71594 4.79972 4.88715 4.92003 5.01382 5.06388 5.16985 5.22418 5.24638 5.35206 5.40515 5.50814 5.71690 5.84761 6.10370 6.14070 6.31183 6.74238 7.12247 7.24768 8.28663 8.53028 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.022748 B = 0.004650 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.596909 B = 6019.874789 C = 6987.371977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.029 3.971 3 Si 1.003 2.997 4 H -0.244 1.244 5 H -0.269 1.269 6 H -0.268 1.268 7 C -0.562 4.562 8 H 0.096 0.904 9 C 0.525 3.475 10 O -0.601 6.601 11 N -0.685 5.685 12 C 0.217 3.783 13 C -0.242 4.242 14 C 0.140 3.860 15 N -0.554 5.554 16 C 0.315 3.685 17 N -0.490 5.490 18 C 0.062 3.938 19 C -0.115 4.115 20 C -0.115 4.115 21 C -0.117 4.117 22 C 0.073 3.927 23 C -0.224 4.224 24 H 0.278 0.722 25 H 0.412 0.588 26 H 0.161 0.839 27 H 0.197 0.803 28 H 0.047 0.953 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.046 0.954 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.049 -13.479 3.737 13.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.187 4.187 3 Si 0.822 3.178 4 H -0.166 1.166 5 H -0.194 1.194 6 H -0.193 1.193 7 C -0.597 4.597 8 H 0.114 0.886 9 C 0.332 3.668 10 O -0.486 6.486 11 N -0.330 5.330 12 C 0.110 3.890 13 C -0.266 4.266 14 C -0.017 4.017 15 N -0.272 5.272 16 C 0.084 3.916 17 N -0.208 5.208 18 C -0.064 4.064 19 C -0.152 4.152 20 C -0.153 4.153 21 C -0.155 4.155 22 C -0.053 4.053 23 C -0.250 4.250 24 H 0.088 0.912 25 H 0.249 0.751 26 H 0.179 0.821 27 H 0.214 0.786 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.108 0.892 32 H 0.105 0.895 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.113 0.887 36 H 0.090 0.910 37 H 0.064 0.936 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.899 -13.742 3.508 14.310 hybrid contribution 1.534 1.479 0.195 2.140 sum -0.365 -12.263 3.703 12.815 Atomic orbital electron populations 1.70165 1.09672 1.29410 1.34950 1.27034 0.95535 1.05092 0.91040 0.84889 0.79434 0.74935 0.78585 1.16631 1.19384 1.19263 1.21441 0.95113 0.89245 1.53911 0.88562 1.18878 0.87288 0.83761 0.76849 1.90618 1.15638 1.86919 1.55442 1.43692 1.10467 1.03476 1.75358 1.18355 0.92345 0.87070 0.91247 1.22058 1.05073 0.94358 1.05103 1.22862 0.88301 0.96941 0.93603 1.67630 1.13860 1.30412 1.15296 1.19686 0.88712 0.89162 0.93992 1.59048 1.18526 1.29405 1.13848 1.22229 0.99600 1.00517 0.84032 1.21639 0.93527 0.98915 1.01163 1.21593 1.02157 0.95672 0.95855 1.21698 0.94589 1.02888 0.96339 1.21973 0.96039 0.85733 1.01605 1.21542 0.98320 0.97755 1.07388 0.91188 0.75128 0.82139 0.78603 0.93470 0.92532 0.92126 0.89184 0.89540 0.91164 0.92144 0.88721 0.91007 0.93556 0.87165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -48.69 11.83 21.85 0.26 -48.43 16 2 C 0.03 1.59 5.50 85.33 0.47 2.06 16 3 Si 1.00 39.41 29.56 68.60 2.03 41.44 16 4 H -0.24 -8.74 7.11 99.48 0.71 -8.03 16 5 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 6 H -0.27 -10.16 7.11 99.48 0.71 -9.46 16 7 C -0.56 -30.70 9.54 24.80 0.24 -30.47 16 8 H 0.10 4.63 7.85 -2.91 -0.02 4.60 16 9 C 0.53 30.04 7.60 86.32 0.66 30.70 16 10 O -0.60 -39.71 12.52 -4.40 -0.06 -39.76 16 11 N -0.69 -31.19 5.33 -307.08 -1.64 -32.83 16 12 C 0.22 9.36 6.33 38.53 0.24 9.60 16 13 C -0.24 -7.97 10.06 22.52 0.23 -7.75 16 14 C 0.14 4.22 11.16 84.55 0.94 5.16 16 15 N -0.55 -19.76 8.68 -193.52 -1.68 -21.44 16 16 C 0.31 12.76 6.41 132.96 0.85 13.61 16 17 N -0.49 -17.66 4.68 -702.12 -3.29 -20.94 16 18 C 0.06 1.98 5.24 86.33 0.45 2.43 16 19 C -0.11 -2.82 6.09 30.65 0.19 -2.63 16 20 C -0.12 -2.23 6.00 30.67 0.18 -2.05 16 21 C -0.12 -2.56 6.09 30.65 0.19 -2.37 16 22 C 0.07 2.09 4.65 86.33 0.40 2.49 16 23 C -0.22 -10.49 7.84 22.64 0.18 -10.31 16 24 H 0.28 15.02 8.29 -92.71 -0.77 14.25 16 25 H 0.41 15.41 8.80 -92.71 -0.82 14.59 16 26 H 0.16 4.12 8.06 -2.91 -0.02 4.10 16 27 H 0.20 3.96 8.06 -2.91 -0.02 3.93 16 28 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.06 2.12 6.65 -2.39 -0.02 2.10 16 30 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 33 H 0.07 1.23 8.14 -2.39 -0.02 1.22 16 34 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.07 2.20 7.70 -2.39 -0.02 2.18 16 37 H 0.05 1.29 8.11 -2.39 -0.02 1.27 16 38 H 0.11 6.09 5.39 -2.91 -0.02 6.08 16 Total: -1.00 -76.16 312.34 1.11 -75.05 By element: Atomic # 1 Polarization: 36.17 SS G_CDS: 0.26 Total: 36.43 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: 5.22 Total: 10.48 kcal Atomic # 7 Polarization: -117.30 SS G_CDS: -6.34 Total: -123.64 kcal Atomic # 8 Polarization: -39.71 SS G_CDS: -0.06 Total: -39.76 kcal Atomic # 14 Polarization: 39.41 SS G_CDS: 2.03 Total: 41.44 kcal Total: -76.16 1.11 -75.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888573263.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.292 kcal (2) G-P(sol) polarization free energy of solvation -76.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds