Wall clock time and date at job start Mon Mar 30 2020 02:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00172 * 2 1 4 4 H 1.48497 * 109.47293 * 269.99771 * 3 2 1 5 5 H 1.48495 * 109.47087 * 29.99982 * 3 2 1 6 6 H 1.48504 * 109.46751 * 149.99838 * 3 2 1 7 7 C 1.37877 * 119.99637 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00227 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99996 * 180.02562 * 7 2 1 10 10 N 1.46504 * 109.47431 * 179.97438 * 9 7 2 11 11 C 1.34772 * 120.00126 * 179.97438 * 10 9 7 12 12 O 1.21591 * 120.00011 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99825 * 179.97438 * 11 10 9 14 14 C 1.46502 * 119.99609 * 179.97438 * 13 11 10 15 15 H 1.08994 * 109.47007 * 35.00144 * 14 13 11 16 16 C 1.50701 * 109.46589 * 154.99999 * 14 13 11 17 17 C 1.38655 * 120.78688 * 219.99678 * 16 14 13 18 18 C 1.38199 * 119.16350 * 179.97438 * 17 16 14 19 19 N 1.31871 * 120.76379 * 0.02562 * 18 17 16 20 20 C 1.31870 * 121.72518 * 359.94860 * 19 18 17 21 21 C 1.38199 * 120.76682 * 0.05382 * 20 19 18 22 22 C 1.52995 * 109.47065 * 274.99767 * 14 13 11 23 23 C 1.53001 * 117.49947 * 128.62713 * 22 14 13 24 24 C 1.53001 * 117.49997 * 59.99990 * 22 14 13 25 25 H 0.97000 * 119.99445 * 359.97438 * 1 2 3 26 26 H 1.08993 * 109.47396 * 59.99473 * 9 7 2 27 27 H 1.09006 * 109.46770 * 299.99560 * 9 7 2 28 28 H 0.96999 * 119.99407 * 359.97438 * 10 9 7 29 29 H 0.96999 * 119.99708 * 359.97438 * 13 11 10 30 30 H 1.08004 * 120.41704 * 359.70754 * 17 16 14 31 31 H 1.08003 * 119.62207 * 180.02562 * 18 17 16 32 32 H 1.08006 * 119.61530 * 180.02562 * 20 19 18 33 33 H 1.07998 * 120.42056 * 179.97438 * 21 20 19 34 34 H 1.09004 * 115.55229 * 274.33091 * 22 14 13 35 35 H 1.08998 * 117.49666 * 359.97438 * 23 22 14 36 36 H 1.09001 * 117.49743 * 145.02058 * 23 22 14 37 37 H 1.09005 * 117.49944 * 214.97611 * 24 22 14 38 38 H 1.08996 * 117.49935 * 0.02562 * 24 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 7 3.9998 -2.5754 -0.0001 11 6 5.3249 -2.8217 -0.0001 12 8 6.1150 -1.8976 -0.0006 13 7 5.7741 -4.0925 0.0003 14 6 7.2144 -4.3602 -0.0004 15 1 7.7257 -3.5987 0.5884 16 6 7.4732 -5.7177 0.6007 17 6 8.5507 -5.9249 1.4484 18 6 8.7562 -7.1833 1.9812 19 7 7.9424 -8.1797 1.6913 20 6 6.9077 -8.0191 0.8897 21 6 6.6392 -6.7891 0.3196 22 6 7.7380 -4.3306 -1.4376 23 6 8.9537 -3.4484 -1.7286 24 6 7.5682 -3.0296 -2.2247 25 1 -0.4849 0.8401 0.0004 26 1 3.8746 -0.6809 0.8904 27 1 3.8752 -0.6798 -0.8896 28 1 3.3694 -3.3126 -0.0001 29 1 5.1436 -4.8297 0.0010 30 1 9.2234 -5.1140 1.6858 31 1 9.5930 -7.3529 2.6426 32 1 6.2629 -8.8587 0.6758 33 1 5.7906 -6.6640 -0.3365 34 1 7.6519 -5.2671 -1.9888 35 1 9.3803 -2.8889 -0.8961 36 1 9.6678 -3.8045 -2.4712 37 1 7.3709 -3.1101 -3.2937 38 1 7.0839 -2.1946 -1.7184 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894484065.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:46 Heat of formation + Delta-G solvation = 31.690605 kcal Electronic energy + Delta-G solvation = -20666.134732 eV Core-core repulsion = 17509.494827 eV Total energy + Delta-G solvation = -3156.639904 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.71828 -39.47766 -37.34731 -34.60233 -34.22962 -32.58635 -32.04429 -31.40549 -28.25090 -26.63358 -23.80280 -22.76255 -22.25753 -22.15210 -20.63114 -20.12526 -18.54259 -17.13491 -16.62787 -16.16246 -16.06094 -15.85753 -15.21347 -14.94566 -14.40043 -14.16572 -13.90595 -13.83599 -13.64300 -13.18922 -12.49005 -12.40685 -12.28321 -12.04140 -11.74488 -11.32653 -10.99622 -10.77451 -10.40490 -10.33369 -9.97826 -9.82808 -9.68073 -9.60590 -9.47168 -9.39331 -8.85690 -8.77210 -8.07160 -6.22002 -4.24086 0.89364 0.96414 3.06119 3.26750 3.33975 3.41804 3.56907 3.70314 3.91667 4.22415 4.27590 4.33024 4.56537 4.79915 4.83584 4.89450 4.95216 5.05418 5.13134 5.13687 5.22686 5.38609 5.48547 5.60706 5.69242 5.73027 5.97830 6.07583 6.15243 6.44070 6.50786 6.68835 6.70519 7.09278 7.20786 7.37270 7.52068 7.72790 8.25943 8.64932 8.78838 9.14750 9.38948 10.90001 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.024100 B = 0.004036 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.531905 B = 6936.149411 C = 7619.382272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.543 4.543 8 H 0.079 0.921 9 C 0.239 3.761 10 N -0.721 5.721 11 C 0.699 3.301 12 O -0.599 6.599 13 N -0.747 5.747 14 C 0.235 3.765 15 H 0.100 0.900 16 C -0.036 4.036 17 C -0.159 4.159 18 C 0.100 3.900 19 N -0.489 5.489 20 C 0.101 3.899 21 C -0.166 4.166 22 C -0.169 4.169 23 C -0.172 4.172 24 C -0.175 4.175 25 H 0.268 0.732 26 H 0.023 0.977 27 H 0.019 0.981 28 H 0.392 0.608 29 H 0.392 0.608 30 H 0.137 0.863 31 H 0.156 0.844 32 H 0.156 0.844 33 H 0.135 0.865 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.566 -13.722 -0.450 21.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.581 4.581 8 H 0.097 0.903 9 C 0.116 3.884 10 N -0.372 5.372 11 C 0.400 3.600 12 O -0.479 6.479 13 N -0.403 5.403 14 C 0.129 3.871 15 H 0.118 0.882 16 C -0.045 4.045 17 C -0.180 4.180 18 C -0.057 4.057 19 N -0.198 5.198 20 C -0.056 4.056 21 C -0.186 4.186 22 C -0.189 4.189 23 C -0.209 4.209 24 C -0.212 4.212 25 H 0.077 0.923 26 H 0.041 0.959 27 H 0.037 0.963 28 H 0.225 0.775 29 H 0.227 0.773 30 H 0.155 0.845 31 H 0.174 0.826 32 H 0.174 0.826 33 H 0.153 0.847 34 H 0.119 0.881 35 H 0.113 0.887 36 H 0.108 0.892 37 H 0.105 0.895 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 17.225 -13.514 -0.071 21.893 hybrid contribution -0.498 0.934 -0.492 1.167 sum 16.727 -12.579 -0.562 20.937 Atomic orbital electron populations 1.69882 1.06225 1.27424 1.49488 1.24782 0.94780 0.99158 0.93884 0.86812 0.80594 0.83206 0.79048 1.19847 1.20942 1.18445 1.21092 0.88572 0.95187 1.53261 0.90321 1.19365 0.94839 0.77507 0.96650 1.45407 1.03652 1.11134 1.77020 1.16035 0.83580 0.82544 0.77888 1.90791 1.55167 1.43145 1.58823 1.45201 1.06372 1.06905 1.81862 1.19061 0.81741 0.92420 0.93861 0.88224 1.20362 0.94351 0.95285 0.94469 1.22029 0.98559 0.99282 0.98081 1.22757 0.97467 0.88402 0.97060 1.67681 1.04279 1.34136 1.13670 1.22758 0.94015 0.96440 0.92367 1.21985 1.00989 0.93744 1.01931 1.22593 1.03907 0.96095 0.96327 1.22911 0.91182 1.03246 1.03579 1.23369 0.99174 0.98976 0.99651 0.92263 0.95903 0.96295 0.77456 0.77319 0.84505 0.82635 0.82628 0.84710 0.88140 0.88706 0.89189 0.89546 0.85457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.37 13.96 55.43 0.77 -25.60 16 2 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 3 Si 0.88 21.30 27.47 -169.99 -4.67 16.63 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 6 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 7 C -0.54 -14.76 9.83 -34.44 -0.34 -15.10 16 8 H 0.08 2.23 7.84 -52.48 -0.41 1.81 16 9 C 0.24 5.80 4.50 -5.19 -0.02 5.78 16 10 N -0.72 -14.33 5.55 -66.41 -0.37 -14.70 16 11 C 0.70 12.97 7.89 -86.92 -0.69 12.29 16 12 O -0.60 -12.98 13.37 5.29 0.07 -12.90 16 13 N -0.75 -10.23 5.02 -59.81 -0.30 -10.53 16 14 C 0.24 2.87 2.51 -69.08 -0.17 2.69 16 15 H 0.10 1.38 7.23 -51.93 -0.38 1.01 16 16 C -0.04 -0.37 4.96 -104.31 -0.52 -0.89 16 17 C -0.16 -1.50 9.78 -39.44 -0.39 -1.88 16 18 C 0.10 0.93 11.18 -17.55 -0.20 0.73 16 19 N -0.49 -5.26 10.36 -13.25 -0.14 -5.40 16 20 C 0.10 0.95 11.18 -17.55 -0.20 0.75 16 21 C -0.17 -1.54 9.15 -39.44 -0.36 -1.90 16 22 C -0.17 -1.99 5.34 -90.62 -0.48 -2.47 16 23 C -0.17 -1.93 10.18 -26.73 -0.27 -2.21 16 24 C -0.17 -2.40 9.73 -26.73 -0.26 -2.66 16 25 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 26 H 0.02 0.59 7.20 -51.93 -0.37 0.22 16 27 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 28 H 0.39 6.89 8.34 -40.82 -0.34 6.55 16 29 H 0.39 4.43 6.97 -40.82 -0.28 4.14 16 30 H 0.14 1.05 8.06 -52.48 -0.42 0.63 16 31 H 0.16 1.03 8.06 -52.48 -0.42 0.61 16 32 H 0.16 1.06 8.06 -52.48 -0.42 0.64 16 33 H 0.14 1.03 7.01 -52.49 -0.37 0.66 16 34 H 0.10 1.08 8.11 -51.93 -0.42 0.66 16 35 H 0.09 1.07 8.05 -51.93 -0.42 0.65 16 36 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.13 2.22 5.01 -51.93 -0.26 1.96 16 LS Contribution 320.30 15.07 4.83 4.83 Total: -1.00 -32.34 320.30 -8.72 -41.07 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -4.93 Total: 9.41 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -3.99 Total: -2.79 kcal Atomic # 7 Polarization: -56.21 SS G_CDS: -0.03 Total: -56.24 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.07 Total: -12.90 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.67 Total: 16.63 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.34 -8.72 -41.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894484065.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.757 kcal (2) G-P(sol) polarization free energy of solvation -32.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds