Wall clock time and date at job start Mon Mar 30 2020 02:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00172 * 2 1 4 4 H 1.48497 * 109.47293 * 269.99771 * 3 2 1 5 5 H 1.48495 * 109.47087 * 29.99982 * 3 2 1 6 6 H 1.48504 * 109.46751 * 149.99838 * 3 2 1 7 7 C 1.37877 * 119.99637 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00227 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99996 * 180.02562 * 7 2 1 10 10 N 1.46504 * 109.47431 * 179.97438 * 9 7 2 11 11 C 1.34772 * 120.00126 * 179.97438 * 10 9 7 12 12 O 1.21591 * 120.00011 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99825 * 179.97438 * 11 10 9 14 14 C 1.46502 * 119.99609 * 179.97438 * 13 11 10 15 15 H 1.08994 * 109.47007 * 35.00144 * 14 13 11 16 16 C 1.50701 * 109.46589 * 154.99999 * 14 13 11 17 17 C 1.38655 * 120.78688 * 219.99678 * 16 14 13 18 18 C 1.38199 * 119.16350 * 179.97438 * 17 16 14 19 19 N 1.31871 * 120.76379 * 0.02562 * 18 17 16 20 20 C 1.31870 * 121.72518 * 359.94860 * 19 18 17 21 21 C 1.38199 * 120.76682 * 0.05382 * 20 19 18 22 22 C 1.52995 * 109.47065 * 274.99767 * 14 13 11 23 23 C 1.53001 * 117.49947 * 128.62713 * 22 14 13 24 24 C 1.53001 * 117.49997 * 59.99990 * 22 14 13 25 25 H 0.97000 * 119.99445 * 359.97438 * 1 2 3 26 26 H 1.08993 * 109.47396 * 59.99473 * 9 7 2 27 27 H 1.09006 * 109.46770 * 299.99560 * 9 7 2 28 28 H 0.96999 * 119.99407 * 359.97438 * 10 9 7 29 29 H 0.96999 * 119.99708 * 359.97438 * 13 11 10 30 30 H 1.08004 * 120.41704 * 359.70754 * 17 16 14 31 31 H 1.08003 * 119.62207 * 180.02562 * 18 17 16 32 32 H 1.08006 * 119.61530 * 180.02562 * 20 19 18 33 33 H 1.07998 * 120.42056 * 179.97438 * 21 20 19 34 34 H 1.09004 * 115.55229 * 274.33091 * 22 14 13 35 35 H 1.08998 * 117.49666 * 359.97438 * 23 22 14 36 36 H 1.09001 * 117.49743 * 145.02058 * 23 22 14 37 37 H 1.09005 * 117.49944 * 214.97611 * 24 22 14 38 38 H 1.08996 * 117.49935 * 0.02562 * 24 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 7 3.9998 -2.5754 -0.0001 11 6 5.3249 -2.8217 -0.0001 12 8 6.1150 -1.8976 -0.0006 13 7 5.7741 -4.0925 0.0003 14 6 7.2144 -4.3602 -0.0004 15 1 7.7257 -3.5987 0.5884 16 6 7.4732 -5.7177 0.6007 17 6 8.5507 -5.9249 1.4484 18 6 8.7562 -7.1833 1.9812 19 7 7.9424 -8.1797 1.6913 20 6 6.9077 -8.0191 0.8897 21 6 6.6392 -6.7891 0.3196 22 6 7.7380 -4.3306 -1.4376 23 6 8.9537 -3.4484 -1.7286 24 6 7.5682 -3.0296 -2.2247 25 1 -0.4849 0.8401 0.0004 26 1 3.8746 -0.6809 0.8904 27 1 3.8752 -0.6798 -0.8896 28 1 3.3694 -3.3126 -0.0001 29 1 5.1436 -4.8297 0.0010 30 1 9.2234 -5.1140 1.6858 31 1 9.5930 -7.3529 2.6426 32 1 6.2629 -8.8587 0.6758 33 1 5.7906 -6.6640 -0.3365 34 1 7.6519 -5.2671 -1.9888 35 1 9.3803 -2.8889 -0.8961 36 1 9.6678 -3.8045 -2.4712 37 1 7.3709 -3.1101 -3.2937 38 1 7.0839 -2.1946 -1.7184 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894484065.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:45 Heat of formation + Delta-G solvation = 9.154022 kcal Electronic energy + Delta-G solvation = -20667.111991 eV Core-core repulsion = 17509.494827 eV Total energy + Delta-G solvation = -3157.617164 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.66790 -40.66857 -38.47341 -36.08646 -35.64079 -34.39395 -33.25577 -32.11492 -29.98062 -27.86216 -24.59814 -24.11627 -23.49084 -23.17439 -22.06175 -21.24660 -20.05682 -18.52160 -17.97611 -17.39703 -17.08034 -16.74428 -16.48289 -16.29329 -15.84285 -15.44142 -15.02486 -14.97293 -14.66751 -14.48529 -14.37837 -14.00750 -13.38159 -13.14197 -12.95735 -12.70673 -12.49806 -12.33658 -11.91640 -11.64817 -11.44900 -11.29516 -11.09404 -10.90308 -10.61732 -10.47770 -10.15449 -10.07508 -9.69234 -8.38804 -6.45474 0.19507 0.20957 1.34335 1.36346 1.49262 1.78331 2.20680 2.29581 2.84613 2.91030 2.97210 3.32199 3.52796 3.62121 3.82728 3.92504 4.11343 4.14992 4.15165 4.23895 4.28614 4.60935 4.69246 4.77490 4.80173 4.89971 4.98599 5.01332 5.07831 5.20806 5.26293 5.27307 5.36096 5.55053 5.60460 5.75925 5.96763 6.27429 6.56867 7.03127 7.14751 7.25539 7.67701 8.76008 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.024100 B = 0.004036 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.531905 B = 6936.149411 C = 7619.382272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.027 3.973 3 Si 0.938 3.062 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.545 4.545 8 H 0.058 0.942 9 C 0.254 3.746 10 N -0.722 5.722 11 C 0.700 3.300 12 O -0.629 6.629 13 N -0.728 5.728 14 C 0.238 3.762 15 H 0.082 0.918 16 C -0.046 4.046 17 C -0.162 4.162 18 C 0.095 3.905 19 N -0.511 5.511 20 C 0.095 3.905 21 C -0.166 4.166 22 C -0.160 4.160 23 C -0.155 4.155 24 C -0.199 4.199 25 H 0.272 0.728 26 H 0.010 0.990 27 H 0.010 0.990 28 H 0.403 0.597 29 H 0.407 0.593 30 H 0.151 0.849 31 H 0.180 0.820 32 H 0.179 0.821 33 H 0.150 0.850 34 H 0.117 0.883 35 H 0.092 0.908 36 H 0.113 0.887 37 H 0.093 0.907 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.164 -14.798 -0.568 23.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.173 4.173 3 Si 0.761 3.239 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.184 1.184 7 C -0.583 4.583 8 H 0.076 0.924 9 C 0.129 3.871 10 N -0.375 5.375 11 C 0.400 3.600 12 O -0.512 6.512 13 N -0.384 5.384 14 C 0.132 3.868 15 H 0.100 0.900 16 C -0.055 4.055 17 C -0.182 4.182 18 C -0.061 4.061 19 N -0.220 5.220 20 C -0.061 4.061 21 C -0.186 4.186 22 C -0.180 4.180 23 C -0.192 4.192 24 C -0.236 4.236 25 H 0.081 0.919 26 H 0.028 0.972 27 H 0.028 0.972 28 H 0.238 0.762 29 H 0.244 0.756 30 H 0.168 0.832 31 H 0.197 0.803 32 H 0.196 0.804 33 H 0.168 0.832 34 H 0.135 0.865 35 H 0.110 0.890 36 H 0.132 0.868 37 H 0.112 0.888 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 18.836 -14.656 -0.189 23.866 hybrid contribution -0.974 1.164 -0.440 1.580 sum 17.862 -13.491 -0.629 22.393 Atomic orbital electron populations 1.69985 1.07711 1.28585 1.50817 1.25579 0.95515 1.02643 0.93608 0.85854 0.79273 0.79288 0.79454 1.18976 1.19939 1.18375 1.21292 0.90023 0.94523 1.52507 0.92364 1.18925 0.92887 0.79743 0.95511 1.45118 1.04676 1.09890 1.77853 1.16080 0.82649 0.83683 0.77540 1.90782 1.55729 1.44672 1.59978 1.45019 1.07625 1.05511 1.80262 1.19080 0.80167 0.93207 0.94297 0.89993 1.20232 0.95472 0.94357 0.95442 1.22219 0.98486 0.99894 0.97597 1.23157 0.97858 0.88016 0.97095 1.67724 1.05016 1.34922 1.14349 1.23153 0.93954 0.97176 0.91839 1.22145 1.01136 0.93402 1.01943 1.22623 1.03846 0.95860 0.95627 1.22987 0.90594 1.02067 1.03588 1.23201 1.01431 0.99010 0.99931 0.91877 0.97208 0.97160 0.76168 0.75637 0.83155 0.80340 0.80441 0.83192 0.86464 0.88960 0.86839 0.88848 0.89179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.56 13.96 21.45 0.30 -55.26 16 2 C 0.03 1.51 5.47 84.65 0.46 1.97 16 3 Si 0.94 43.94 27.47 68.60 1.88 45.83 16 4 H -0.26 -12.00 7.11 99.48 0.71 -11.30 16 5 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 6 H -0.26 -12.06 6.54 99.48 0.65 -11.41 16 7 C -0.55 -29.98 9.83 25.60 0.25 -29.73 16 8 H 0.06 3.36 7.84 -2.91 -0.02 3.34 16 9 C 0.25 12.38 4.50 85.63 0.38 12.76 16 10 N -0.72 -28.68 5.55 -482.28 -2.68 -31.35 16 11 C 0.70 25.80 7.89 179.05 1.41 27.21 16 12 O -0.63 -27.50 13.37 -4.00 -0.05 -27.55 16 13 N -0.73 -19.11 5.02 -461.41 -2.32 -21.43 16 14 C 0.24 5.47 2.51 44.24 0.11 5.58 16 15 H 0.08 2.22 7.23 -2.39 -0.02 2.20 16 16 C -0.05 -0.86 4.96 -19.67 -0.10 -0.96 16 17 C -0.16 -2.70 9.78 22.36 0.22 -2.49 16 18 C 0.09 1.56 11.18 84.68 0.95 2.50 16 19 N -0.51 -9.90 10.36 -195.84 -2.03 -11.92 16 20 C 0.10 1.55 11.18 84.68 0.95 2.50 16 21 C -0.17 -2.68 9.15 22.36 0.20 -2.47 16 22 C -0.16 -3.47 5.34 -10.79 -0.06 -3.53 16 23 C -0.15 -3.21 10.18 30.60 0.31 -2.90 16 24 C -0.20 -5.33 9.73 30.60 0.30 -5.03 16 25 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 26 H 0.01 0.51 7.20 -2.39 -0.02 0.50 16 27 H 0.01 0.53 7.57 -2.38 -0.02 0.51 16 28 H 0.40 14.05 8.34 -92.71 -0.77 13.28 16 29 H 0.41 8.44 6.97 -92.71 -0.65 7.80 16 30 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 31 H 0.18 1.91 8.06 -2.91 -0.02 1.89 16 32 H 0.18 1.94 8.06 -2.91 -0.02 1.92 16 33 H 0.15 1.86 7.01 -2.91 -0.02 1.84 16 34 H 0.12 2.19 8.11 -2.38 -0.02 2.17 16 35 H 0.09 1.97 8.05 -2.39 -0.02 1.95 16 36 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.09 2.31 8.14 -2.38 -0.02 2.29 16 38 H 0.09 3.20 5.01 -2.39 -0.01 3.19 16 Total: -1.00 -69.72 320.30 0.12 -69.60 By element: Atomic # 1 Polarization: 27.05 SS G_CDS: -0.38 Total: 26.67 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: 5.40 Total: 5.43 kcal Atomic # 7 Polarization: -113.24 SS G_CDS: -6.72 Total: -119.97 kcal Atomic # 8 Polarization: -27.50 SS G_CDS: -0.05 Total: -27.55 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.88 Total: 45.83 kcal Total: -69.72 0.12 -69.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894484065.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.756 kcal (2) G-P(sol) polarization free energy of solvation -69.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds