Wall clock time and date at job start Mon Mar 30 2020 01:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 119.99900 * 2 1 4 4 H 1.48504 * 109.47025 * 269.99190 * 3 2 1 5 5 H 1.48496 * 109.47352 * 29.99901 * 3 2 1 6 6 H 1.48511 * 109.46991 * 149.99803 * 3 2 1 7 7 C 1.37875 * 119.99915 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00260 * 180.02562 * 7 2 1 9 9 C 1.50708 * 120.00050 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46949 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46708 * 179.97438 * 10 9 7 12 12 C 1.34784 * 119.99893 * 180.02562 * 11 10 9 13 13 O 1.21552 * 119.99772 * 359.97438 * 12 11 10 14 14 C 1.47837 * 120.00053 * 179.72941 * 12 11 10 15 15 C 1.39535 * 119.59625 * 180.02562 * 14 12 11 16 16 C 1.38202 * 118.90207 * 180.02562 * 15 14 12 17 17 C 1.39474 * 118.49365 * 359.97438 * 16 15 14 18 18 C 1.39191 * 119.63296 * 359.90690 * 17 16 15 19 19 N 1.31846 * 120.09653 * 359.90306 * 18 17 16 20 20 C 1.50729 * 121.19573 * 180.27923 * 18 17 16 21 21 C 1.52838 * 110.45302 * 339.34009 * 20 18 17 22 22 C 1.53425 * 108.89780 * 51.37346 * 21 20 18 23 23 N 1.39195 * 119.28183 * 179.68513 * 17 16 15 24 24 H 0.97000 * 120.00246 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46827 * 59.99505 * 9 7 2 26 26 H 1.08994 * 109.47143 * 299.99781 * 9 7 2 27 27 H 1.08998 * 109.46692 * 60.00339 * 10 9 7 28 28 H 1.08994 * 109.47584 * 300.00203 * 10 9 7 29 29 H 0.97005 * 120.00261 * 0.02562 * 11 10 9 30 30 H 1.08001 * 120.54795 * 0.02830 * 15 14 12 31 31 H 1.07994 * 120.75220 * 179.97438 * 16 15 14 32 32 H 1.09000 * 109.30807 * 99.63273 * 20 18 17 33 33 H 1.08992 * 109.31172 * 219.23255 * 20 18 17 34 34 H 1.08996 * 109.57275 * 171.20433 * 21 20 18 35 35 H 1.09008 * 109.56350 * 291.43892 * 21 20 18 36 36 H 1.09003 * 109.79132 * 56.30689 * 22 21 20 37 37 H 1.09003 * 109.79813 * 177.16203 * 22 21 20 38 38 H 0.96998 * 120.53255 * 346.64620 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5127 -4.9308 0.0012 12 6 2.1866 -6.0981 0.0018 13 8 3.4021 -6.0981 0.0014 14 6 1.4474 -7.3784 0.0085 15 6 2.1535 -8.5818 0.0096 16 6 1.4481 -9.7702 0.0153 17 6 0.0544 -9.7166 0.0203 18 6 -0.5869 -8.4812 0.0213 19 7 0.1210 -7.3689 0.0196 20 6 -2.0908 -8.3822 0.0329 21 6 -2.7157 -9.6859 -0.4632 22 6 -2.1099 -10.8572 0.3210 23 7 -0.6726 -10.9037 0.0194 24 1 -0.4850 0.8400 -0.0004 25 1 0.6246 -2.5570 -0.8897 26 1 0.6240 -2.5568 0.8903 27 1 2.8718 -3.6043 0.8906 28 1 2.8719 -3.6044 -0.8894 29 1 0.5427 -4.9308 0.0011 30 1 3.2336 -8.5846 0.0061 31 1 1.9642 -10.7188 0.0159 32 1 -2.4311 -8.1835 1.0492 33 1 -2.4034 -7.5657 -0.6179 34 1 -3.7935 -9.6581 -0.3034 35 1 -2.5073 -9.8093 -1.5260 36 1 -2.2581 -10.7019 1.3897 37 1 -2.5820 -11.7905 0.0139 38 1 -0.2374 -11.7479 -0.1775 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897758006.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:07 Heat of formation + Delta-G solvation = -15.132772 kcal Electronic energy + Delta-G solvation = -20193.672964 eV Core-core repulsion = 17035.002646 eV Total energy + Delta-G solvation = -3158.670318 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.84949 -38.93780 -36.95076 -34.79844 -34.02337 -32.75034 -30.98593 -30.96857 -29.33471 -26.04925 -24.78431 -23.76977 -23.43214 -21.32151 -20.56630 -19.82249 -17.86427 -17.52996 -16.79887 -16.29490 -15.35958 -15.25620 -14.85205 -14.66014 -14.44192 -14.35524 -13.91376 -13.82045 -13.46653 -13.15737 -12.91645 -12.78200 -12.22947 -11.85841 -11.42896 -11.35360 -11.12201 -10.98508 -10.80114 -10.58548 -10.23303 -9.97786 -9.65648 -9.50573 -9.33159 -9.10655 -8.45268 -8.26398 -7.73881 -6.02259 -4.04843 0.90272 1.19211 2.99879 3.06848 3.34163 3.39844 3.44176 3.74108 4.03777 4.09906 4.39533 4.47435 4.58835 4.65879 4.72349 4.93504 5.03324 5.16087 5.24095 5.34476 5.36803 5.46919 5.63201 5.71255 5.81857 5.88688 6.05732 6.35105 6.44741 6.46779 6.81287 6.83754 7.05296 7.24092 7.61262 7.72121 7.84017 7.96953 8.22529 8.36462 8.77127 9.01344 9.59354 11.09395 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.029504 B = 0.003294 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.781112 B = 8498.384558 C = 9394.708615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.520 4.520 8 H 0.059 0.941 9 C 0.012 3.988 10 C 0.120 3.880 11 N -0.702 5.702 12 C 0.565 3.435 13 O -0.553 6.553 14 C 0.033 3.967 15 C -0.069 4.069 16 C -0.164 4.164 17 C 0.185 3.815 18 C 0.064 3.936 19 N -0.420 5.420 20 C -0.063 4.063 21 C -0.138 4.138 22 C 0.119 3.881 23 N -0.740 5.740 24 H 0.261 0.739 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.407 0.593 30 H 0.147 0.853 31 H 0.137 0.863 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.082 0.918 38 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.325 -25.262 -0.018 26.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.559 4.559 8 H 0.078 0.922 9 C -0.025 4.025 10 C -0.002 4.002 11 N -0.351 5.351 12 C 0.350 3.650 13 O -0.431 6.431 14 C -0.108 4.108 15 C -0.090 4.090 16 C -0.194 4.194 17 C 0.078 3.922 18 C -0.082 4.082 19 N -0.131 5.131 20 C -0.101 4.101 21 C -0.177 4.177 22 C -0.006 4.006 23 N -0.371 5.371 24 H 0.071 0.929 25 H 0.041 0.959 26 H 0.042 0.958 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.242 0.758 30 H 0.165 0.835 31 H 0.155 0.845 32 H 0.100 0.900 33 H 0.109 0.891 34 H 0.103 0.897 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.101 0.899 38 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -6.213 -24.244 0.042 25.027 hybrid contribution 0.574 -0.239 -0.085 0.628 sum -5.638 -24.483 -0.043 25.124 Atomic orbital electron populations 1.69966 1.06066 1.26763 1.50491 1.24998 0.94887 0.99356 0.95097 0.86518 0.79835 0.83075 0.78145 1.20602 1.21215 1.19748 1.21067 0.93238 0.90415 1.51159 0.92245 1.19326 0.94217 0.90993 0.97988 1.21768 0.96106 0.81514 1.00816 1.46189 1.11310 1.05902 1.71685 1.17791 0.86658 0.83236 0.77320 1.90739 1.13045 1.87389 1.51977 1.20941 0.89206 0.94303 1.06365 1.21878 1.01881 0.91025 0.94264 1.21059 0.91682 0.99140 1.07518 1.18666 0.91356 0.87812 0.94327 1.20779 0.96265 0.86404 1.04780 1.67239 1.07364 1.30644 1.07903 1.20241 0.88279 0.98491 1.03068 1.21921 1.00563 0.94478 1.00707 1.21650 0.80215 0.99299 0.99400 1.44537 1.08603 1.06104 1.77816 0.92908 0.95857 0.95835 0.92450 0.92442 0.75764 0.83539 0.84536 0.89966 0.89108 0.89706 0.90966 0.91838 0.89911 0.76148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.75 13.29 55.43 0.74 -26.01 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 8 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 9 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 10 C 0.12 2.74 5.61 -4.04 -0.02 2.72 16 11 N -0.70 -14.17 5.54 -61.25 -0.34 -14.51 16 12 C 0.57 11.12 7.80 -12.33 -0.10 11.02 16 13 O -0.55 -12.19 16.31 5.32 0.09 -12.10 16 14 C 0.03 0.54 6.74 -83.11 -0.56 -0.02 16 15 C -0.07 -0.94 9.63 -39.11 -0.38 -1.31 16 16 C -0.16 -1.74 9.99 -39.13 -0.39 -2.13 16 17 C 0.19 1.95 6.48 -83.70 -0.54 1.41 16 18 C 0.06 0.79 6.67 -82.22 -0.55 0.24 16 19 N -0.42 -6.47 9.39 -5.90 -0.06 -6.52 16 20 C -0.06 -0.59 6.00 -27.95 -0.17 -0.76 16 21 C -0.14 -0.86 6.10 -26.59 -0.16 -1.02 16 22 C 0.12 0.63 7.11 -3.58 -0.03 0.61 16 23 N -0.74 -5.15 5.77 -58.01 -0.33 -5.49 16 24 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 28 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 29 H 0.41 7.75 7.79 -40.82 -0.32 7.43 16 30 H 0.15 1.90 7.64 -52.49 -0.40 1.50 16 31 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 38 H 0.40 1.92 8.86 -40.82 -0.36 1.56 16 LS Contribution 322.77 15.07 4.86 4.86 Total: -1.00 -33.63 322.77 -8.78 -42.41 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -5.27 Total: 3.22 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -3.45 Total: -2.68 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: 0.01 Total: -52.53 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.09 Total: -12.10 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.63 -8.78 -42.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897758006.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.279 kcal (2) G-P(sol) polarization free energy of solvation -33.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds