Wall clock time and date at job start Mon Mar 30 2020 01:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 119.99900 * 2 1 4 4 H 1.48504 * 109.47025 * 269.99190 * 3 2 1 5 5 H 1.48496 * 109.47352 * 29.99901 * 3 2 1 6 6 H 1.48511 * 109.46991 * 149.99803 * 3 2 1 7 7 C 1.37875 * 119.99915 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00260 * 180.02562 * 7 2 1 9 9 C 1.50708 * 120.00050 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46949 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46708 * 179.97438 * 10 9 7 12 12 C 1.34784 * 119.99893 * 180.02562 * 11 10 9 13 13 O 1.21552 * 119.99772 * 359.97438 * 12 11 10 14 14 C 1.47837 * 120.00053 * 179.72941 * 12 11 10 15 15 C 1.39535 * 119.59625 * 180.02562 * 14 12 11 16 16 C 1.38202 * 118.90207 * 180.02562 * 15 14 12 17 17 C 1.39474 * 118.49365 * 359.97438 * 16 15 14 18 18 C 1.39191 * 119.63296 * 359.90690 * 17 16 15 19 19 N 1.31846 * 120.09653 * 359.90306 * 18 17 16 20 20 C 1.50729 * 121.19573 * 180.27923 * 18 17 16 21 21 C 1.52838 * 110.45302 * 339.34009 * 20 18 17 22 22 C 1.53425 * 108.89780 * 51.37346 * 21 20 18 23 23 N 1.39195 * 119.28183 * 179.68513 * 17 16 15 24 24 H 0.97000 * 120.00246 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46827 * 59.99505 * 9 7 2 26 26 H 1.08994 * 109.47143 * 299.99781 * 9 7 2 27 27 H 1.08998 * 109.46692 * 60.00339 * 10 9 7 28 28 H 1.08994 * 109.47584 * 300.00203 * 10 9 7 29 29 H 0.97005 * 120.00261 * 0.02562 * 11 10 9 30 30 H 1.08001 * 120.54795 * 0.02830 * 15 14 12 31 31 H 1.07994 * 120.75220 * 179.97438 * 16 15 14 32 32 H 1.09000 * 109.30807 * 99.63273 * 20 18 17 33 33 H 1.08992 * 109.31172 * 219.23255 * 20 18 17 34 34 H 1.08996 * 109.57275 * 171.20433 * 21 20 18 35 35 H 1.09008 * 109.56350 * 291.43892 * 21 20 18 36 36 H 1.09003 * 109.79132 * 56.30689 * 22 21 20 37 37 H 1.09003 * 109.79813 * 177.16203 * 22 21 20 38 38 H 0.96998 * 120.53255 * 346.64620 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5127 -4.9308 0.0012 12 6 2.1866 -6.0981 0.0018 13 8 3.4021 -6.0981 0.0014 14 6 1.4474 -7.3784 0.0085 15 6 2.1535 -8.5818 0.0096 16 6 1.4481 -9.7702 0.0153 17 6 0.0544 -9.7166 0.0203 18 6 -0.5869 -8.4812 0.0213 19 7 0.1210 -7.3689 0.0196 20 6 -2.0908 -8.3822 0.0329 21 6 -2.7157 -9.6859 -0.4632 22 6 -2.1099 -10.8572 0.3210 23 7 -0.6726 -10.9037 0.0194 24 1 -0.4850 0.8400 -0.0004 25 1 0.6246 -2.5570 -0.8897 26 1 0.6240 -2.5568 0.8903 27 1 2.8718 -3.6043 0.8906 28 1 2.8719 -3.6044 -0.8894 29 1 0.5427 -4.9308 0.0011 30 1 3.2336 -8.5846 0.0061 31 1 1.9642 -10.7188 0.0159 32 1 -2.4311 -8.1835 1.0492 33 1 -2.4034 -7.5657 -0.6179 34 1 -3.7935 -9.6581 -0.3034 35 1 -2.5073 -9.8093 -1.5260 36 1 -2.2581 -10.7019 1.3897 37 1 -2.5820 -11.7905 0.0139 38 1 -0.2374 -11.7479 -0.1775 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897758006.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:06 Heat of formation + Delta-G solvation = -39.606288 kcal Electronic energy + Delta-G solvation = -20194.734216 eV Core-core repulsion = 17035.002646 eV Total energy + Delta-G solvation = -3159.731570 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.83550 -40.34979 -37.81761 -36.62594 -34.97529 -34.68645 -32.19114 -31.80498 -31.02374 -27.34569 -26.23128 -24.84901 -24.27869 -23.01932 -22.02065 -20.83580 -19.06708 -18.50700 -18.41464 -17.65931 -16.63487 -16.60045 -16.49534 -15.97218 -15.75888 -15.42129 -14.96866 -14.89403 -14.43637 -14.32325 -14.24384 -14.00805 -13.81265 -13.22452 -12.95230 -12.71714 -12.52851 -12.26061 -12.07277 -11.93020 -11.70416 -11.59890 -11.48878 -11.15958 -10.60726 -10.51520 -10.41377 -10.04484 -8.54254 -8.23400 -6.34857 -0.16965 0.26699 1.41674 1.43227 1.54751 1.76048 2.21517 2.38524 2.46423 2.88182 3.10672 3.13496 3.62730 3.74883 4.03260 4.08995 4.11536 4.17459 4.35382 4.46869 4.47660 4.64913 4.74740 4.81399 4.82306 4.85239 5.03577 5.07939 5.15886 5.27723 5.30846 5.46679 5.48863 5.55678 5.77772 6.06341 6.14966 6.50571 6.71402 6.77872 6.94145 7.22364 7.34315 8.88900 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.029504 B = 0.003294 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.781112 B = 8498.384558 C = 9394.708615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.005 3.995 3 Si 0.970 3.030 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.547 4.547 8 H 0.061 0.939 9 C 0.024 3.976 10 C 0.139 3.861 11 N -0.704 5.704 12 C 0.565 3.435 13 O -0.585 6.585 14 C -0.009 4.009 15 C -0.069 4.069 16 C -0.161 4.161 17 C 0.201 3.799 18 C 0.046 3.954 19 N -0.443 5.443 20 C -0.066 4.066 21 C -0.132 4.132 22 C 0.114 3.886 23 N -0.722 5.722 24 H 0.266 0.734 25 H 0.006 0.994 26 H 0.006 0.994 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.411 0.589 30 H 0.146 0.854 31 H 0.175 0.825 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.109 0.891 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.118 0.882 38 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.119 -27.673 0.029 28.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.194 4.194 3 Si 0.794 3.206 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.586 4.586 8 H 0.079 0.921 9 C -0.014 4.014 10 C 0.016 3.984 11 N -0.354 5.354 12 C 0.352 3.648 13 O -0.466 6.466 14 C -0.148 4.148 15 C -0.091 4.091 16 C -0.190 4.190 17 C 0.091 3.909 18 C -0.101 4.101 19 N -0.155 5.155 20 C -0.104 4.104 21 C -0.170 4.170 22 C -0.010 4.010 23 N -0.351 5.351 24 H 0.075 0.925 25 H 0.024 0.976 26 H 0.024 0.976 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.247 0.753 30 H 0.164 0.836 31 H 0.193 0.807 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.127 0.873 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.136 0.864 38 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -7.026 -26.715 0.085 27.623 hybrid contribution 0.657 0.314 -0.093 0.735 sum -6.369 -26.401 -0.007 27.158 Atomic orbital electron populations 1.70081 1.07666 1.28053 1.50902 1.25934 0.95841 1.03277 0.94299 0.85378 0.78572 0.78100 0.78577 1.19651 1.20388 1.18951 1.21460 0.93645 0.91728 1.51720 0.92059 1.19124 0.94186 0.91900 0.96156 1.21318 0.95101 0.81911 1.00091 1.46047 1.11373 1.05440 1.72501 1.18335 0.86522 0.84071 0.75854 1.90692 1.14413 1.88028 1.53441 1.20448 0.89872 0.93191 1.11253 1.21939 1.01979 0.91172 0.94031 1.21375 0.91745 0.99442 1.06443 1.18760 0.91692 0.88491 0.91963 1.21340 0.97526 0.86539 1.04721 1.67116 1.07122 1.32613 1.08625 1.20373 0.86598 1.00202 1.03254 1.21924 1.01869 0.92905 1.00320 1.21917 0.78895 1.00519 0.99654 1.44722 1.09410 1.05457 1.75511 0.92495 0.97609 0.97589 0.93157 0.93122 0.75279 0.83607 0.80742 0.89579 0.90348 0.87268 0.91446 0.91345 0.86367 0.74333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.42 13.29 21.45 0.28 -56.14 16 2 C 0.01 0.30 5.46 84.65 0.46 0.76 16 3 Si 0.97 44.98 29.54 68.60 2.03 47.00 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.55 -32.06 9.11 25.60 0.23 -31.83 16 8 H 0.06 3.48 7.74 -2.91 -0.02 3.46 16 9 C 0.02 1.30 5.09 29.85 0.15 1.45 16 10 C 0.14 6.68 5.61 86.38 0.48 7.16 16 11 N -0.70 -30.13 5.54 -465.98 -2.58 -32.71 16 12 C 0.56 23.41 7.80 86.78 0.68 24.08 16 13 O -0.58 -27.02 16.31 -3.88 -0.06 -27.08 16 14 C -0.01 -0.29 6.74 41.88 0.28 -0.01 16 15 C -0.07 -1.87 9.63 22.57 0.22 -1.66 16 16 C -0.16 -3.03 9.99 22.56 0.23 -2.80 16 17 C 0.20 3.73 6.48 38.50 0.25 3.98 16 18 C 0.05 1.11 6.67 42.79 0.29 1.40 16 19 N -0.44 -14.01 9.39 -172.57 -1.62 -15.63 16 20 C -0.07 -1.16 6.00 29.80 0.18 -0.99 16 21 C -0.13 -1.23 6.10 30.68 0.19 -1.05 16 22 C 0.11 0.71 7.11 86.44 0.61 1.32 16 23 N -0.72 -7.06 5.77 -337.45 -1.95 -9.01 16 24 H 0.27 15.13 8.31 -92.71 -0.77 14.35 16 25 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 26 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 27 H 0.05 2.46 8.14 -2.39 -0.02 2.44 16 28 H 0.05 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.41 16.73 7.79 -92.70 -0.72 16.01 16 30 H 0.15 3.83 7.64 -2.91 -0.02 3.81 16 31 H 0.18 1.88 8.06 -2.91 -0.02 1.86 16 32 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 36 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.12 0.03 8.14 -2.39 -0.02 0.01 16 38 H 0.42 1.92 8.86 -92.71 -0.82 1.09 16 Total: -1.00 -75.33 322.77 -0.11 -75.44 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -0.46 Total: 16.30 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: 4.25 Total: 1.83 kcal Atomic # 7 Polarization: -107.62 SS G_CDS: -5.87 Total: -113.49 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -0.06 Total: -27.08 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Total: -75.33 -0.11 -75.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897758006.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.837 kcal (2) G-P(sol) polarization free energy of solvation -75.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds