Wall clock time and date at job start Mon Mar 30 2020 01:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86807 * 120.00015 * 2 1 4 4 H 1.48497 * 109.46728 * 239.99834 * 3 2 1 5 5 H 1.48501 * 109.46857 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46864 * 120.00021 * 3 2 1 7 7 C 1.39928 * 119.99804 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99653 * 168.61618 * 7 2 1 9 9 C 1.41407 * 120.00528 * 348.61744 * 7 2 1 10 10 C 1.40780 * 120.20451 * 332.41023 * 9 7 2 11 11 C 1.37644 * 119.88148 * 179.97438 * 10 9 7 12 12 C 1.38533 * 120.31979 * 0.02562 * 11 10 9 13 13 C 1.39246 * 120.42973 * 0.02562 * 12 11 10 14 14 N 1.39958 * 119.94463 * 179.97438 * 13 12 11 15 15 C 1.34785 * 119.99924 * 146.63604 * 14 13 12 16 16 O 1.21585 * 119.99384 * 355.23595 * 15 14 13 17 17 N 1.34771 * 119.99916 * 175.23142 * 15 14 13 18 18 C 1.46499 * 119.99717 * 180.02562 * 17 15 14 19 19 C 1.53005 * 109.47085 * 175.55780 * 18 17 15 20 20 N 1.46896 * 115.55119 * 271.46326 * 19 18 17 21 21 C 1.53005 * 117.49614 * 125.75143 * 19 18 17 22 22 C 1.53005 * 60.00012 * 252.51227 * 21 19 18 23 23 C 1.38271 * 120.10747 * 0.23531 * 13 12 11 24 24 H 0.97007 * 120.00011 * 0.02562 * 1 2 3 25 25 H 1.07994 * 120.06215 * 0.02562 * 10 9 7 26 26 H 1.08002 * 119.84125 * 179.97438 * 11 10 9 27 27 H 1.08003 * 119.78201 * 180.02562 * 12 11 10 28 28 H 0.97000 * 120.00556 * 326.64244 * 14 13 12 29 29 H 0.96998 * 120.00273 * 359.72464 * 17 15 14 30 30 H 1.09003 * 109.47394 * 295.55798 * 18 17 15 31 31 H 1.08998 * 109.47364 * 55.56090 * 18 17 15 32 32 H 1.00906 * 110.99469 * 299.98861 * 20 19 18 33 33 H 1.00897 * 111.00094 * 63.94252 * 20 19 18 34 34 H 1.08994 * 117.49862 * 0.02562 * 21 19 18 35 35 H 1.09001 * 117.49597 * 145.02159 * 21 19 18 36 36 H 1.08997 * 117.49641 * 252.50975 * 22 21 19 37 37 H 1.09003 * 117.49509 * 107.48721 * 22 21 19 38 38 H 1.08000 * 120.16177 * 179.72298 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0961 1.6963 -1.2125 5 1 1.2773 2.7465 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0079 -1.2118 0.0005 8 1 3.0720 -1.2211 -0.1841 9 6 1.3218 -2.4243 0.2428 10 6 0.1498 -2.4313 1.0226 11 6 -0.5131 -3.6153 1.2538 12 6 -0.0323 -4.8012 0.7230 13 6 1.1263 -4.8096 -0.0494 14 7 1.6034 -6.0135 -0.5802 15 6 2.2260 -6.0232 -1.7756 16 8 2.2969 -5.0024 -2.4322 17 7 2.7700 -7.1643 -2.2428 18 6 3.4472 -7.1746 -3.5418 19 6 4.0661 -8.5529 -3.7834 20 7 5.4315 -8.7328 -3.2723 21 6 3.6953 -9.2764 -5.0796 22 6 3.1315 -9.7637 -3.7433 23 6 1.8093 -3.6312 -0.2882 24 1 -0.4850 0.8401 -0.0004 25 1 -0.2291 -1.5093 1.4381 26 1 -1.4119 -3.6200 1.8525 27 1 -0.5595 -5.7251 0.9095 28 1 1.4859 -6.8410 -0.0879 29 1 2.7170 -7.9777 -1.7170 30 1 2.7258 -6.9572 -4.3294 31 1 4.2317 -6.4179 -3.5486 32 1 6.0666 -8.0745 -3.6983 33 1 5.4538 -8.6578 -2.2664 34 1 3.0109 -8.7702 -5.7603 35 1 4.4647 -9.8859 -5.5535 36 1 3.5300 -10.6939 -3.3382 37 1 2.0759 -9.5783 -3.5449 38 1 2.7104 -3.6374 -0.8834 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000904495835.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:54 Heat of formation + Delta-G solvation = 17.755568 kcal Electronic energy + Delta-G solvation = -20391.869038 eV Core-core repulsion = 17234.624866 eV Total energy + Delta-G solvation = -3157.244173 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.03871 -38.52917 -37.16493 -34.41965 -33.86447 -32.89954 -31.41345 -29.76639 -28.41028 -26.35322 -25.22962 -22.84284 -21.64947 -20.81982 -20.18428 -19.81810 -18.01587 -17.64348 -16.29200 -15.89172 -15.54194 -15.35141 -14.97370 -14.58711 -14.56142 -14.27220 -13.70006 -13.27114 -12.93625 -12.75169 -12.58486 -12.10977 -11.75033 -11.65256 -11.27114 -11.08235 -10.89815 -10.63639 -10.46431 -10.37030 -10.11002 -9.72877 -9.54835 -9.25749 -9.17800 -8.88050 -8.86758 -7.37492 -6.82430 -6.61931 -4.30199 2.74401 2.85915 3.00767 3.11722 3.15461 3.25415 3.53996 3.73476 3.96284 4.01083 4.35638 4.54254 4.71976 4.72950 4.81425 5.32854 5.38562 5.59708 5.62025 5.68141 5.76588 5.89808 6.26417 6.42739 6.53196 6.77514 6.82529 6.83693 7.05247 7.08517 7.14216 7.29858 7.38904 7.72896 7.85789 8.04108 8.14516 8.30229 8.46473 8.71500 8.94516 9.01735 9.08077 10.30888 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.024998 B = 0.003774 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.819069 B = 7418.307441 C = 8211.585594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.074 3.926 3 Si 0.911 3.089 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.458 4.458 8 H 0.075 0.925 9 C 0.119 3.881 10 C -0.170 4.170 11 C -0.094 4.094 12 C -0.261 4.261 13 C 0.167 3.833 14 N -0.681 5.681 15 C 0.695 3.305 16 O -0.563 6.563 17 N -0.749 5.749 18 C 0.150 3.850 19 C 0.018 3.982 20 N -0.810 5.810 21 C -0.149 4.149 22 C -0.159 4.159 23 C -0.209 4.209 24 H 0.279 0.721 25 H 0.122 0.878 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.393 0.607 29 H 0.392 0.608 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.347 0.653 33 H 0.346 0.654 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.447 -15.149 -3.964 16.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.143 4.143 3 Si 0.736 3.264 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.488 4.488 8 H 0.093 0.907 9 C 0.116 3.884 10 C -0.190 4.190 11 C -0.113 4.113 12 C -0.283 4.283 13 C 0.075 3.925 14 N -0.327 5.327 15 C 0.395 3.605 16 O -0.438 6.438 17 N -0.407 5.407 18 C 0.023 3.977 19 C -0.077 4.077 20 N -0.339 5.339 21 C -0.187 4.187 22 C -0.197 4.197 23 C -0.230 4.230 24 H 0.090 0.910 25 H 0.140 0.860 26 H 0.110 0.890 27 H 0.106 0.894 28 H 0.227 0.773 29 H 0.226 0.774 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.161 0.839 33 H 0.160 0.840 34 H 0.117 0.883 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.116 0.884 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.318 -14.759 -4.939 16.447 hybrid contribution 0.098 0.899 0.738 1.167 sum 5.415 -13.860 -4.201 15.462 Atomic orbital electron populations 1.69801 1.07410 1.28968 1.36555 1.25877 0.94822 1.01153 0.92430 0.86322 0.79995 0.80223 0.79859 1.19072 1.20379 1.18924 1.19515 0.96035 0.90498 1.42767 0.90667 1.17499 0.91417 0.91651 0.87802 1.21413 0.98922 0.96675 1.01970 1.20465 0.98311 0.92805 0.99684 1.20019 0.98941 0.97350 1.11980 1.17233 0.94039 0.83941 0.97317 1.42589 1.60505 1.10129 1.19513 1.16014 0.79127 0.83703 0.81618 1.91004 1.63124 1.31559 1.58158 1.45122 1.62169 1.11170 1.22223 1.21222 0.96532 0.95030 0.84892 1.21569 0.90714 0.91743 1.03642 1.58596 1.04957 1.58903 1.11461 1.23093 1.02888 1.02442 0.90272 1.23068 0.98357 0.97390 1.00907 1.20992 1.03202 0.91797 1.07054 0.91005 0.86032 0.89042 0.89382 0.77333 0.77418 0.91285 0.91203 0.83896 0.84037 0.88338 0.87936 0.88044 0.88387 0.87503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.56 10.79 55.55 0.60 -20.96 16 2 C 0.07 1.93 5.25 -17.35 -0.09 1.84 16 3 Si 0.91 19.53 29.58 -169.99 -5.03 14.50 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 5 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 7 C -0.46 -12.84 9.06 -37.74 -0.34 -13.18 16 8 H 0.08 2.05 7.87 -52.48 -0.41 1.63 16 9 C 0.12 3.35 5.56 -106.85 -0.59 2.75 16 10 C -0.17 -4.54 8.67 -38.84 -0.34 -4.88 16 11 C -0.09 -2.22 10.02 -39.69 -0.40 -2.62 16 12 C -0.26 -5.85 9.97 -39.10 -0.39 -6.24 16 13 C 0.17 3.87 6.27 -83.76 -0.53 3.34 16 14 N -0.68 -12.37 5.35 -14.27 -0.08 -12.44 16 15 C 0.70 12.89 8.30 -86.92 -0.72 12.17 16 16 O -0.56 -13.44 14.02 5.29 0.07 -13.36 16 17 N -0.75 -9.57 5.46 -65.22 -0.36 -9.92 16 18 C 0.15 1.76 5.86 -4.04 -0.02 1.74 16 19 C 0.02 0.15 2.68 -131.60 -0.35 -0.20 16 20 N -0.81 -6.59 9.70 0.75 0.01 -6.59 16 21 C -0.15 -1.18 10.10 -26.73 -0.27 -1.45 16 22 C -0.16 -1.25 9.68 -26.73 -0.26 -1.51 16 23 C -0.21 -5.55 8.39 -38.69 -0.32 -5.87 16 24 H 0.28 6.84 8.30 -40.82 -0.34 6.50 16 25 H 0.12 3.33 6.14 -52.49 -0.32 3.01 16 26 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 27 H 0.09 1.70 8.06 -52.48 -0.42 1.27 16 28 H 0.39 5.44 8.83 -40.82 -0.36 5.08 16 29 H 0.39 3.82 8.15 -40.82 -0.33 3.49 16 30 H 0.07 0.88 7.88 -51.93 -0.41 0.47 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.35 2.63 9.08 -39.29 -0.36 2.27 16 33 H 0.35 2.67 9.08 -39.29 -0.36 2.31 16 34 H 0.10 0.75 8.04 -51.93 -0.42 0.33 16 35 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.11 2.95 6.41 -52.49 -0.34 2.61 16 LS Contribution 324.49 15.07 4.89 4.89 Total: -1.00 -32.31 324.49 -9.49 -41.80 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: -4.98 Total: 16.18 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: -4.63 Total: -14.09 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: 0.17 Total: -49.91 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: 0.07 Total: -13.36 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.03 Total: 14.50 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.31 -9.49 -41.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000904495835.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.554 kcal (2) G-P(sol) polarization free energy of solvation -32.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds