Wall clock time and date at job start Mon Mar 30 2020 01:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86807 * 120.00015 * 2 1 4 4 H 1.48497 * 109.46728 * 239.99834 * 3 2 1 5 5 H 1.48501 * 109.46857 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46864 * 120.00021 * 3 2 1 7 7 C 1.39928 * 119.99804 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99653 * 168.61618 * 7 2 1 9 9 C 1.41407 * 120.00528 * 348.61744 * 7 2 1 10 10 C 1.40780 * 120.20451 * 332.41023 * 9 7 2 11 11 C 1.37644 * 119.88148 * 179.97438 * 10 9 7 12 12 C 1.38533 * 120.31979 * 0.02562 * 11 10 9 13 13 C 1.39246 * 120.42973 * 0.02562 * 12 11 10 14 14 N 1.39958 * 119.94463 * 179.97438 * 13 12 11 15 15 C 1.34785 * 119.99924 * 146.63604 * 14 13 12 16 16 O 1.21585 * 119.99384 * 355.23595 * 15 14 13 17 17 N 1.34771 * 119.99916 * 175.23142 * 15 14 13 18 18 C 1.46499 * 119.99717 * 180.02562 * 17 15 14 19 19 C 1.53005 * 109.47085 * 175.55780 * 18 17 15 20 20 N 1.46896 * 115.55119 * 271.46326 * 19 18 17 21 21 C 1.53005 * 117.49614 * 125.75143 * 19 18 17 22 22 C 1.53005 * 60.00012 * 252.51227 * 21 19 18 23 23 C 1.38271 * 120.10747 * 0.23531 * 13 12 11 24 24 H 0.97007 * 120.00011 * 0.02562 * 1 2 3 25 25 H 1.07994 * 120.06215 * 0.02562 * 10 9 7 26 26 H 1.08002 * 119.84125 * 179.97438 * 11 10 9 27 27 H 1.08003 * 119.78201 * 180.02562 * 12 11 10 28 28 H 0.97000 * 120.00556 * 326.64244 * 14 13 12 29 29 H 0.96998 * 120.00273 * 359.72464 * 17 15 14 30 30 H 1.09003 * 109.47394 * 295.55798 * 18 17 15 31 31 H 1.08998 * 109.47364 * 55.56090 * 18 17 15 32 32 H 1.00906 * 110.99469 * 299.98861 * 20 19 18 33 33 H 1.00897 * 111.00094 * 63.94252 * 20 19 18 34 34 H 1.08994 * 117.49862 * 0.02562 * 21 19 18 35 35 H 1.09001 * 117.49597 * 145.02159 * 21 19 18 36 36 H 1.08997 * 117.49641 * 252.50975 * 22 21 19 37 37 H 1.09003 * 117.49509 * 107.48721 * 22 21 19 38 38 H 1.08000 * 120.16177 * 179.72298 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0961 1.6963 -1.2125 5 1 1.2773 2.7465 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0079 -1.2118 0.0005 8 1 3.0720 -1.2211 -0.1841 9 6 1.3218 -2.4243 0.2428 10 6 0.1498 -2.4313 1.0226 11 6 -0.5131 -3.6153 1.2538 12 6 -0.0323 -4.8012 0.7230 13 6 1.1263 -4.8096 -0.0494 14 7 1.6034 -6.0135 -0.5802 15 6 2.2260 -6.0232 -1.7756 16 8 2.2969 -5.0024 -2.4322 17 7 2.7700 -7.1643 -2.2428 18 6 3.4472 -7.1746 -3.5418 19 6 4.0661 -8.5529 -3.7834 20 7 5.4315 -8.7328 -3.2723 21 6 3.6953 -9.2764 -5.0796 22 6 3.1315 -9.7637 -3.7433 23 6 1.8093 -3.6312 -0.2882 24 1 -0.4850 0.8401 -0.0004 25 1 -0.2291 -1.5093 1.4381 26 1 -1.4119 -3.6200 1.8525 27 1 -0.5595 -5.7251 0.9095 28 1 1.4859 -6.8410 -0.0879 29 1 2.7170 -7.9777 -1.7170 30 1 2.7258 -6.9572 -4.3294 31 1 4.2317 -6.4179 -3.5486 32 1 6.0666 -8.0745 -3.6983 33 1 5.4538 -8.6578 -2.2664 34 1 3.0109 -8.7702 -5.7603 35 1 4.4647 -9.8859 -5.5535 36 1 3.5300 -10.6939 -3.3382 37 1 2.0759 -9.5783 -3.5449 38 1 2.7104 -3.6374 -0.8834 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000904495835.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:54 Heat of formation + Delta-G solvation = -6.360135 kcal Electronic energy + Delta-G solvation = -20392.914774 eV Core-core repulsion = 17234.624866 eV Total energy + Delta-G solvation = -3158.289908 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.51633 -39.60369 -38.79520 -36.20719 -35.22765 -34.66860 -32.07136 -31.73805 -30.10112 -27.62750 -27.17942 -23.67690 -23.17895 -22.69963 -21.62808 -20.82233 -19.59994 -19.25530 -17.67085 -17.13604 -16.93075 -16.49962 -16.41240 -16.27761 -15.82517 -15.68784 -14.94755 -14.75508 -14.66374 -14.17038 -13.92157 -13.55793 -13.38256 -13.11901 -12.82751 -12.57562 -12.34619 -12.22274 -12.01865 -11.61164 -11.57585 -11.40780 -11.11901 -10.90939 -10.70675 -10.25865 -9.84889 -9.36037 -8.68096 -8.56377 -6.38204 0.93517 1.02484 1.35520 1.47879 1.50826 1.60701 2.15092 2.22013 2.76347 2.77352 3.27245 3.35134 3.57616 3.74761 3.92951 4.07329 4.47275 4.58084 4.63990 4.70140 4.73626 4.79393 5.03845 5.05271 5.10679 5.13186 5.18027 5.28699 5.33346 5.38211 5.71109 5.82914 6.05741 6.12193 6.13936 6.18276 6.37890 6.41946 6.69950 6.95338 7.01271 7.07814 7.57152 8.37325 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.024998 B = 0.003774 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.819069 B = 7418.307441 C = 8211.585594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.032 3.968 3 Si 0.985 3.015 4 H -0.267 1.267 5 H -0.262 1.262 6 H -0.257 1.257 7 C -0.504 4.504 8 H 0.064 0.936 9 C 0.088 3.912 10 C -0.196 4.196 11 C -0.092 4.092 12 C -0.248 4.248 13 C 0.174 3.826 14 N -0.668 5.668 15 C 0.692 3.308 16 O -0.620 6.620 17 N -0.720 5.720 18 C 0.150 3.850 19 C 0.015 3.985 20 N -0.806 5.806 21 C -0.145 4.145 22 C -0.148 4.148 23 C -0.235 4.235 24 H 0.287 0.713 25 H 0.107 0.893 26 H 0.125 0.875 27 H 0.133 0.867 28 H 0.419 0.581 29 H 0.412 0.588 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.350 0.650 33 H 0.349 0.651 34 H 0.101 0.899 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.101 0.899 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.087 -17.239 -3.640 18.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.181 4.181 3 Si 0.806 3.194 4 H -0.191 1.191 5 H -0.186 1.186 6 H -0.181 1.181 7 C -0.534 4.534 8 H 0.082 0.918 9 C 0.086 3.914 10 C -0.216 4.216 11 C -0.111 4.111 12 C -0.269 4.269 13 C 0.080 3.920 14 N -0.316 5.316 15 C 0.392 3.608 16 O -0.500 6.500 17 N -0.377 5.377 18 C 0.024 3.976 19 C -0.080 4.080 20 N -0.336 5.336 21 C -0.184 4.184 22 C -0.186 4.186 23 C -0.258 4.258 24 H 0.098 0.902 25 H 0.125 0.875 26 H 0.142 0.858 27 H 0.151 0.849 28 H 0.256 0.744 29 H 0.249 0.751 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.164 0.836 33 H 0.163 0.837 34 H 0.119 0.881 35 H 0.127 0.873 36 H 0.129 0.871 37 H 0.120 0.880 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.968 -16.961 -4.595 18.261 hybrid contribution 0.190 1.346 0.600 1.486 sum 5.158 -15.615 -3.995 16.923 Atomic orbital electron populations 1.69853 1.08723 1.30354 1.36859 1.26735 0.95717 1.04338 0.91310 0.85218 0.78735 0.75587 0.79881 1.19119 1.18599 1.18072 1.19745 0.95920 0.92167 1.45535 0.91766 1.17837 0.92514 0.92367 0.88729 1.21383 0.99460 0.97554 1.03181 1.20852 0.98840 0.92155 0.99209 1.20458 0.97981 0.98634 1.09854 1.17291 0.93699 0.84592 0.96435 1.42311 1.60082 1.09644 1.19577 1.16255 0.78970 0.84238 0.81334 1.90982 1.65099 1.34150 1.59742 1.44871 1.60261 1.10122 1.22493 1.21310 0.95740 0.96800 0.83767 1.21392 0.91127 0.90393 1.05095 1.58652 1.04458 1.58724 1.11752 1.23174 1.03013 1.01970 0.90203 1.23131 0.98216 0.96833 1.00406 1.20940 1.03446 0.93265 1.08100 0.90193 0.87509 0.85759 0.84889 0.74365 0.75076 0.92247 0.92957 0.83640 0.83728 0.88100 0.87250 0.87103 0.88019 0.89871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.02 10.79 21.82 0.24 -45.79 16 2 C 0.03 1.76 5.25 85.25 0.45 2.20 16 3 Si 0.99 41.02 29.58 68.60 2.03 43.05 16 4 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 5 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 6 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 7 C -0.50 -29.82 9.06 23.46 0.21 -29.61 16 8 H 0.06 3.75 7.87 -2.91 -0.02 3.73 16 9 C 0.09 5.18 5.56 -21.31 -0.12 5.06 16 10 C -0.20 -10.71 8.67 22.75 0.20 -10.51 16 11 C -0.09 -4.23 10.02 22.20 0.22 -4.00 16 12 C -0.25 -10.45 9.97 22.58 0.23 -10.22 16 13 C 0.17 7.93 6.27 38.09 0.24 8.17 16 14 N -0.67 -23.14 5.35 -317.32 -1.70 -24.84 16 15 C 0.69 25.35 8.30 179.05 1.49 26.84 16 16 O -0.62 -30.53 14.02 -3.98 -0.06 -30.58 16 17 N -0.72 -17.36 5.46 -478.53 -2.61 -19.97 16 18 C 0.15 3.44 5.86 86.38 0.51 3.95 16 19 C 0.01 0.23 2.68 3.53 0.01 0.24 16 20 N -0.81 -11.72 9.70 -151.55 -1.47 -13.18 16 21 C -0.15 -2.00 10.10 30.60 0.31 -1.69 16 22 C -0.15 -1.90 9.68 30.60 0.30 -1.60 16 23 C -0.24 -13.01 8.39 22.85 0.19 -12.82 16 24 H 0.29 14.33 8.30 -92.70 -0.77 13.56 16 25 H 0.11 6.06 6.14 -2.91 -0.02 6.04 16 26 H 0.12 4.83 8.06 -2.91 -0.02 4.81 16 27 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 28 H 0.42 10.15 8.83 -92.71 -0.82 9.33 16 29 H 0.41 6.86 8.15 -92.71 -0.76 6.10 16 30 H 0.06 1.50 7.88 -2.39 -0.02 1.48 16 31 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.35 4.88 9.08 -89.69 -0.81 4.07 16 33 H 0.35 4.72 9.08 -89.70 -0.81 3.91 16 34 H 0.10 1.35 8.04 -2.39 -0.02 1.33 16 35 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.08 4.90 6.41 -2.91 -0.02 4.88 16 Total: -1.00 -74.22 324.49 -1.42 -75.64 By element: Atomic # 1 Polarization: 41.74 SS G_CDS: -2.07 Total: 39.67 kcal Atomic # 6 Polarization: -28.21 SS G_CDS: 4.22 Total: -23.99 kcal Atomic # 7 Polarization: -98.24 SS G_CDS: -5.55 Total: -103.78 kcal Atomic # 8 Polarization: -30.53 SS G_CDS: -0.06 Total: -30.58 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.05 kcal Total: -74.22 -1.42 -75.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000904495835.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.277 kcal (2) G-P(sol) polarization free energy of solvation -74.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds