Wall clock time and date at job start Mon Mar 30 2020 02:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00369 * 2 1 4 4 H 1.48497 * 109.47585 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47059 * 300.00217 * 3 2 1 6 6 H 1.48497 * 109.47094 * 59.99648 * 3 2 1 7 7 C 1.37879 * 119.99816 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00304 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99927 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.46872 * 180.02562 * 9 7 2 11 11 C 1.34774 * 119.99689 * 180.02562 * 10 9 7 12 12 O 1.21516 * 120.00241 * 0.02562 * 11 10 9 13 13 C 1.48164 * 120.00189 * 180.02562 * 11 10 9 14 14 C 1.40018 * 120.87846 * 359.97424 * 13 11 10 15 15 C 1.37947 * 119.17905 * 180.02562 * 14 13 11 16 16 N 1.31926 * 120.99452 * 359.72280 * 15 14 13 17 17 C 1.32316 * 121.94703 * 0.57089 * 16 15 14 18 18 N 1.39023 * 119.64294 * 179.70551 * 17 16 15 19 19 C 1.46506 * 119.99728 * 179.72631 * 18 17 16 20 20 C 1.53782 * 113.61543 * 252.49784 * 19 18 17 21 21 C 1.53777 * 87.07853 * 220.02226 * 20 19 18 22 22 C 1.53778 * 87.08544 * 25.43211 * 21 20 19 23 23 C 1.39114 * 120.70986 * 359.43343 * 17 16 15 24 24 H 0.97003 * 120.00171 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46829 * 60.00201 * 9 7 2 26 26 H 1.09002 * 109.46831 * 300.00333 * 9 7 2 27 27 H 0.96994 * 119.99773 * 0.02562 * 10 9 7 28 28 H 1.08010 * 120.41173 * 0.02562 * 14 13 11 29 29 H 1.07992 * 119.50219 * 180.02562 * 15 14 13 30 30 H 0.96995 * 120.00163 * 0.02562 * 18 17 16 31 31 H 1.09002 * 112.85053 * 23.80910 * 19 18 17 32 32 H 1.09000 * 113.61096 * 334.56780 * 20 19 18 33 33 H 1.09002 * 113.61384 * 105.47201 * 20 19 18 34 34 H 1.09007 * 113.61638 * 270.88124 * 21 20 19 35 35 H 1.09003 * 113.61084 * 139.98448 * 21 20 19 36 36 H 1.08997 * 113.61430 * 220.01932 * 22 21 20 37 37 H 1.08998 * 113.68980 * 89.12657 * 22 21 20 38 38 H 1.08007 * 120.53787 * 180.25793 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6128 -0.0005 11 6 1.7536 -4.8834 -0.0011 12 8 0.5589 -5.1054 -0.0020 13 6 2.7163 -6.0096 -0.0005 14 6 4.0967 -5.7750 0.0001 15 6 4.9615 -6.8497 0.0000 16 7 4.5064 -8.0880 0.0050 17 6 3.2110 -8.3579 -0.0010 18 7 2.7843 -9.6810 -0.0016 19 6 1.3519 -9.9886 -0.0021 20 6 0.8382 -10.5327 1.3413 21 6 -0.0209 -11.5134 0.5259 22 6 1.0181 -11.3664 -0.5982 23 6 2.2716 -7.3318 -0.0011 24 1 -0.4850 0.8401 -0.0004 25 1 0.6239 -2.5567 -0.8903 26 1 0.6245 -2.5571 0.8897 27 1 3.1565 -3.4355 -0.0002 28 1 4.4796 -4.7651 0.0005 29 1 6.0272 -6.6748 0.0009 30 1 3.4349 -10.4004 0.0028 31 1 0.7452 -9.1789 -0.4076 32 1 1.6090 -11.0199 1.9385 33 1 0.2540 -9.8096 1.9106 34 1 -1.0040 -11.1208 0.2659 35 1 -0.0636 -12.5155 0.9527 36 1 0.5792 -11.3163 -1.5946 37 1 1.8385 -12.0810 -0.5325 38 1 1.2149 -7.5553 -0.0018 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907803294.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:42 Heat of formation + Delta-G solvation = 19.538894 kcal Electronic energy + Delta-G solvation = -20133.529417 eV Core-core repulsion = 16976.362575 eV Total energy + Delta-G solvation = -3157.166842 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.49179 -39.16509 -38.29939 -34.51866 -34.21981 -32.61086 -32.04400 -29.40969 -27.47062 -25.93449 -25.16843 -24.45075 -22.41604 -22.33593 -20.10149 -19.78643 -18.30601 -17.03296 -16.57080 -15.98520 -15.66700 -15.44774 -14.98681 -14.71072 -14.64217 -14.32633 -14.05421 -13.83894 -13.14106 -12.87190 -12.81124 -12.69623 -12.07841 -11.89599 -11.71803 -11.38916 -11.06773 -10.98243 -10.93851 -10.70608 -10.35783 -10.13975 -9.73387 -9.60429 -9.42251 -9.15265 -8.78004 -7.96186 -7.73984 -6.19554 -4.26674 1.03069 1.37358 3.01330 3.22461 3.29627 3.32654 3.42405 3.90154 4.13010 4.24272 4.32930 4.36595 4.54890 4.61476 4.68457 5.01846 5.11822 5.16975 5.20743 5.33999 5.37672 5.38434 5.41551 5.58903 5.72039 5.76339 5.77906 5.98153 6.03250 6.33883 6.51044 6.94986 7.24777 7.32948 7.46166 7.48662 7.62179 7.92341 8.13892 8.52795 8.71658 8.97665 9.39773 10.90718 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.029690 B = 0.003350 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.856136 B = 8357.122434 C = 9165.398933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.544 4.544 8 H 0.064 0.936 9 C 0.248 3.752 10 N -0.698 5.698 11 C 0.537 3.463 12 O -0.546 6.546 13 C -0.034 4.034 14 C -0.205 4.205 15 C 0.142 3.858 16 N -0.539 5.539 17 C 0.396 3.604 18 N -0.715 5.715 19 C 0.128 3.872 20 C -0.158 4.158 21 C -0.140 4.140 22 C -0.146 4.146 23 C -0.185 4.185 24 H 0.266 0.734 25 H 0.030 0.970 26 H 0.030 0.970 27 H 0.392 0.608 28 H 0.138 0.862 29 H 0.159 0.841 30 H 0.403 0.597 31 H 0.113 0.887 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.345 -20.412 0.246 21.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.582 4.582 8 H 0.083 0.917 9 C 0.127 3.873 10 N -0.346 5.346 11 C 0.322 3.678 12 O -0.426 6.426 13 C -0.046 4.046 14 C -0.229 4.229 15 C -0.014 4.014 16 N -0.257 5.257 17 C 0.160 3.840 18 N -0.347 5.347 19 C 0.022 3.978 20 C -0.197 4.197 21 C -0.178 4.178 22 C -0.184 4.184 23 C -0.211 4.211 24 H 0.076 0.924 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.226 0.774 28 H 0.155 0.845 29 H 0.176 0.824 30 H 0.239 0.761 31 H 0.130 0.870 32 H 0.103 0.897 33 H 0.092 0.908 34 H 0.104 0.896 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.696 -21.056 0.241 21.814 hybrid contribution 0.565 1.498 0.025 1.601 sum 6.261 -19.558 0.266 20.537 Atomic orbital electron populations 1.69982 1.06122 1.27276 1.48842 1.24952 0.94928 0.99499 0.94617 0.86343 0.79850 0.82854 0.77772 1.19572 1.20773 1.20769 1.21245 0.93343 0.90313 1.53320 0.91742 1.19201 0.88270 0.81759 0.98022 1.46428 1.11493 1.05803 1.70919 1.18223 0.87812 0.83283 0.78523 1.90723 1.16066 1.84866 1.50937 1.20427 0.93915 0.94048 0.96160 1.22074 0.92832 1.01086 1.06867 1.22291 0.99878 0.86154 0.93114 1.66991 1.14376 1.24255 1.20120 1.18267 0.88624 0.85861 0.91210 1.44428 1.06402 1.03169 1.80702 1.22653 0.81057 0.97176 0.96895 1.23529 0.99657 0.99168 0.97352 1.22690 0.97991 1.00067 0.97063 1.23324 0.99359 0.96482 0.99275 1.21522 1.00828 0.91105 1.07604 0.92444 0.95186 0.95200 0.77355 0.84460 0.82383 0.76098 0.86956 0.89746 0.90756 0.89618 0.90926 0.90675 0.89688 0.84019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.86 13.29 55.43 0.74 -25.13 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 7 C -0.54 -14.63 9.28 -34.44 -0.32 -14.95 16 8 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 9 C 0.25 6.54 5.43 -5.19 -0.03 6.51 16 10 N -0.70 -14.92 5.51 -62.32 -0.34 -15.27 16 11 C 0.54 11.24 7.80 -12.18 -0.10 11.15 16 12 O -0.55 -13.34 16.44 5.35 0.09 -13.25 16 13 C -0.03 -0.58 5.90 -104.68 -0.62 -1.19 16 14 C -0.21 -2.84 9.61 -39.02 -0.37 -3.21 16 15 C 0.14 1.77 11.16 -17.62 -0.20 1.57 16 16 N -0.54 -7.41 10.37 -12.49 -0.13 -7.54 16 17 C 0.40 5.43 7.65 -155.08 -1.19 4.24 16 18 N -0.71 -7.62 5.53 -53.16 -0.29 -7.91 16 19 C 0.13 1.19 4.03 -67.11 -0.27 0.92 16 20 C -0.16 -1.32 7.88 -25.92 -0.20 -1.52 16 21 C -0.14 -0.95 8.08 -25.92 -0.21 -1.16 16 22 C -0.15 -1.03 7.83 -25.92 -0.20 -1.23 16 23 C -0.19 -2.87 8.85 -38.79 -0.34 -3.21 16 24 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 25 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.39 7.16 6.46 -40.82 -0.26 6.90 16 28 H 0.14 1.65 6.53 -52.48 -0.34 1.30 16 29 H 0.16 1.42 8.06 -52.49 -0.42 1.00 16 30 H 0.40 3.74 8.85 -40.82 -0.36 3.38 16 31 H 0.11 1.16 6.10 -51.93 -0.32 0.84 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.52 8.12 -51.93 -0.42 0.10 16 38 H 0.14 2.19 5.71 -52.48 -0.30 1.89 16 LS Contribution 323.67 15.07 4.88 4.88 Total: -1.00 -32.22 323.67 -9.15 -41.38 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -4.92 Total: 7.61 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: -4.15 Total: -0.43 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: -0.03 Total: -55.85 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: 0.09 Total: -13.25 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.22 -9.15 -41.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907803294.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.916 kcal (2) G-P(sol) polarization free energy of solvation -32.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds