Wall clock time and date at job start Mon Mar 30 2020 02:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00369 * 2 1 4 4 H 1.48497 * 109.47585 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47059 * 300.00217 * 3 2 1 6 6 H 1.48497 * 109.47094 * 59.99648 * 3 2 1 7 7 C 1.37879 * 119.99816 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00304 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99927 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.46872 * 180.02562 * 9 7 2 11 11 C 1.34774 * 119.99689 * 180.02562 * 10 9 7 12 12 O 1.21516 * 120.00241 * 0.02562 * 11 10 9 13 13 C 1.48164 * 120.00189 * 180.02562 * 11 10 9 14 14 C 1.40018 * 120.87846 * 359.97424 * 13 11 10 15 15 C 1.37947 * 119.17905 * 180.02562 * 14 13 11 16 16 N 1.31926 * 120.99452 * 359.72280 * 15 14 13 17 17 C 1.32316 * 121.94703 * 0.57089 * 16 15 14 18 18 N 1.39023 * 119.64294 * 179.70551 * 17 16 15 19 19 C 1.46506 * 119.99728 * 179.72631 * 18 17 16 20 20 C 1.53782 * 113.61543 * 252.49784 * 19 18 17 21 21 C 1.53777 * 87.07853 * 220.02226 * 20 19 18 22 22 C 1.53778 * 87.08544 * 25.43211 * 21 20 19 23 23 C 1.39114 * 120.70986 * 359.43343 * 17 16 15 24 24 H 0.97003 * 120.00171 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46829 * 60.00201 * 9 7 2 26 26 H 1.09002 * 109.46831 * 300.00333 * 9 7 2 27 27 H 0.96994 * 119.99773 * 0.02562 * 10 9 7 28 28 H 1.08010 * 120.41173 * 0.02562 * 14 13 11 29 29 H 1.07992 * 119.50219 * 180.02562 * 15 14 13 30 30 H 0.96995 * 120.00163 * 0.02562 * 18 17 16 31 31 H 1.09002 * 112.85053 * 23.80910 * 19 18 17 32 32 H 1.09000 * 113.61096 * 334.56780 * 20 19 18 33 33 H 1.09002 * 113.61384 * 105.47201 * 20 19 18 34 34 H 1.09007 * 113.61638 * 270.88124 * 21 20 19 35 35 H 1.09003 * 113.61084 * 139.98448 * 21 20 19 36 36 H 1.08997 * 113.61430 * 220.01932 * 22 21 20 37 37 H 1.08998 * 113.68980 * 89.12657 * 22 21 20 38 38 H 1.08007 * 120.53787 * 180.25793 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6128 -0.0005 11 6 1.7536 -4.8834 -0.0011 12 8 0.5589 -5.1054 -0.0020 13 6 2.7163 -6.0096 -0.0005 14 6 4.0967 -5.7750 0.0001 15 6 4.9615 -6.8497 0.0000 16 7 4.5064 -8.0880 0.0050 17 6 3.2110 -8.3579 -0.0010 18 7 2.7843 -9.6810 -0.0016 19 6 1.3519 -9.9886 -0.0021 20 6 0.8382 -10.5327 1.3413 21 6 -0.0209 -11.5134 0.5259 22 6 1.0181 -11.3664 -0.5982 23 6 2.2716 -7.3318 -0.0011 24 1 -0.4850 0.8401 -0.0004 25 1 0.6239 -2.5567 -0.8903 26 1 0.6245 -2.5571 0.8897 27 1 3.1565 -3.4355 -0.0002 28 1 4.4796 -4.7651 0.0005 29 1 6.0272 -6.6748 0.0009 30 1 3.4349 -10.4004 0.0028 31 1 0.7452 -9.1789 -0.4076 32 1 1.6090 -11.0199 1.9385 33 1 0.2540 -9.8096 1.9106 34 1 -1.0040 -11.1208 0.2659 35 1 -0.0636 -12.5155 0.9527 36 1 0.5792 -11.3163 -1.5946 37 1 1.8385 -12.0810 -0.5325 38 1 1.2149 -7.5553 -0.0018 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907803294.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:41 Heat of formation + Delta-G solvation = -2.521253 kcal Electronic energy + Delta-G solvation = -20134.486016 eV Core-core repulsion = 16976.362575 eV Total energy + Delta-G solvation = -3158.123442 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.65675 -40.33655 -39.52263 -36.29181 -35.38800 -34.42680 -33.45176 -30.46814 -29.43115 -26.58403 -26.19182 -25.80870 -24.16592 -23.39814 -21.63729 -20.62328 -19.75475 -18.23792 -18.07441 -17.24101 -17.03564 -16.71039 -16.33873 -16.27816 -15.83232 -15.80438 -15.29647 -14.92493 -14.60603 -14.11046 -14.05717 -13.87448 -13.51072 -13.35546 -12.91970 -12.77703 -12.76105 -12.23061 -12.09824 -11.77412 -11.47922 -11.37606 -11.26084 -11.08584 -10.83912 -10.78353 -10.51015 -9.93123 -8.70743 -8.30126 -6.46888 -0.24519 0.30747 1.44432 1.45432 1.59048 1.91453 2.07158 2.26304 2.45693 2.92902 3.05453 3.57104 3.65200 3.69191 3.70886 3.91175 3.94320 3.96492 4.13491 4.22687 4.61106 4.69856 4.78184 4.79056 4.82026 5.05037 5.06602 5.06849 5.12589 5.19371 5.19642 5.35059 5.40597 5.54308 5.64370 5.80874 6.00084 6.59286 6.61647 6.75896 7.11700 7.18147 7.32748 8.82420 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.029690 B = 0.003350 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.856136 B = 8357.122434 C = 9165.398933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.986 3.014 4 H -0.251 1.251 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.556 4.556 8 H 0.087 0.913 9 C 0.264 3.736 10 N -0.691 5.691 11 C 0.537 3.463 12 O -0.591 6.591 13 C -0.053 4.053 14 C -0.204 4.204 15 C 0.155 3.845 16 N -0.542 5.542 17 C 0.396 3.604 18 N -0.702 5.702 19 C 0.114 3.886 20 C -0.158 4.158 21 C -0.133 4.133 22 C -0.134 4.134 23 C -0.200 4.200 24 H 0.269 0.731 25 H -0.007 1.007 26 H -0.008 1.008 27 H 0.410 0.590 28 H 0.157 0.843 29 H 0.202 0.798 30 H 0.413 0.587 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.059 0.941 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.100 0.900 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.422 -21.237 0.196 23.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.809 3.191 4 H -0.174 1.174 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.594 4.594 8 H 0.105 0.895 9 C 0.142 3.858 10 N -0.341 5.341 11 C 0.324 3.676 12 O -0.474 6.474 13 C -0.064 4.064 14 C -0.227 4.227 15 C -0.002 4.002 16 N -0.261 5.261 17 C 0.160 3.840 18 N -0.335 5.335 19 C 0.009 3.991 20 C -0.197 4.197 21 C -0.171 4.171 22 C -0.172 4.172 23 C -0.226 4.226 24 H 0.078 0.922 25 H 0.010 0.990 26 H 0.010 0.990 27 H 0.247 0.753 28 H 0.175 0.825 29 H 0.219 0.781 30 H 0.250 0.750 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.078 0.922 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.097 0.903 37 H 0.119 0.881 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 8.807 -21.944 0.191 23.646 hybrid contribution -0.410 1.633 0.048 1.684 sum 8.397 -20.311 0.239 21.980 Atomic orbital electron populations 1.70141 1.08294 1.28587 1.49882 1.26069 0.95788 1.03921 0.93767 0.85089 0.79181 0.77179 0.77650 1.17444 1.20486 1.20484 1.21626 0.94418 0.90288 1.53019 0.89550 1.18668 0.88625 0.83966 0.94544 1.46110 1.11639 1.05043 1.71298 1.18893 0.88039 0.83956 0.76735 1.90687 1.18424 1.85562 1.52687 1.20091 0.94408 0.92633 0.99232 1.22278 0.91295 1.02742 1.06377 1.22972 1.01561 0.85068 0.90622 1.67162 1.13863 1.24952 1.20106 1.18349 0.88410 0.86569 0.90651 1.44506 1.07206 1.02289 1.79464 1.22830 0.80149 0.98010 0.98149 1.23527 0.99997 0.99316 0.96866 1.22674 0.97653 1.00352 0.96408 1.23296 0.99720 0.94814 0.99392 1.21489 1.00884 0.91364 1.08881 0.92189 0.98954 0.98983 0.75258 0.82545 0.78114 0.74967 0.88708 0.89088 0.92234 0.89702 0.89324 0.90338 0.88134 0.85143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.93 13.29 21.45 0.28 -55.64 16 2 C 0.00 0.23 5.46 84.66 0.46 0.70 16 3 Si 0.99 41.97 29.54 68.60 2.03 43.99 16 4 H -0.25 -9.80 7.11 99.48 0.71 -9.10 16 5 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 6 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.56 -30.08 9.28 25.60 0.24 -29.85 16 8 H 0.09 4.20 7.60 -2.91 -0.02 4.17 16 9 C 0.26 14.63 5.43 85.64 0.46 15.09 16 10 N -0.69 -30.32 5.51 -469.38 -2.58 -32.90 16 11 C 0.54 23.41 7.80 86.88 0.68 24.09 16 12 O -0.59 -30.82 16.44 -3.77 -0.06 -30.89 16 13 C -0.05 -1.78 5.90 -19.90 -0.12 -1.90 16 14 C -0.20 -5.23 9.61 22.63 0.22 -5.01 16 15 C 0.15 3.34 11.16 84.61 0.94 4.29 16 16 N -0.54 -13.53 10.37 -193.42 -2.00 -15.53 16 17 C 0.40 10.47 7.65 133.08 1.02 11.49 16 18 N -0.70 -14.13 5.53 -322.09 -1.78 -15.91 16 19 C 0.11 2.07 4.03 45.52 0.18 2.26 16 20 C -0.16 -2.56 7.88 31.12 0.25 -2.31 16 21 C -0.13 -1.62 8.08 31.12 0.25 -1.37 16 22 C -0.13 -1.66 7.83 31.12 0.24 -1.41 16 23 C -0.20 -6.32 8.85 22.78 0.20 -6.12 16 24 H 0.27 15.05 8.31 -92.71 -0.77 14.27 16 25 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 26 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 27 H 0.41 14.73 6.46 -92.71 -0.60 14.13 16 28 H 0.16 3.32 6.53 -2.91 -0.02 3.30 16 29 H 0.20 2.58 8.06 -2.91 -0.02 2.56 16 30 H 0.41 6.78 8.85 -92.71 -0.82 5.96 16 31 H 0.10 2.08 6.10 -2.39 -0.01 2.06 16 32 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 35 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.10 0.96 8.12 -2.39 -0.02 0.94 16 38 H 0.13 4.33 5.71 -2.91 -0.02 4.31 16 Total: -1.00 -72.66 323.67 0.59 -72.08 By element: Atomic # 1 Polarization: 25.19 SS G_CDS: -0.32 Total: 24.87 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: 5.03 Total: 9.93 kcal Atomic # 7 Polarization: -113.90 SS G_CDS: -6.08 Total: -119.99 kcal Atomic # 8 Polarization: -30.82 SS G_CDS: -0.06 Total: -30.89 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 43.99 kcal Total: -72.66 0.59 -72.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907803294.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.554 kcal (2) G-P(sol) polarization free energy of solvation -72.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds