Wall clock time and date at job start Mon Mar 30 2020 01:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 120.00356 * 2 1 4 4 H 1.48500 * 109.47207 * 270.00429 * 3 2 1 5 5 H 1.48500 * 109.46910 * 29.99831 * 3 2 1 6 6 H 1.48494 * 109.47249 * 149.99988 * 3 2 1 7 7 C 1.37881 * 119.99946 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99746 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99951 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.46800 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.46817 * 180.02562 * 10 9 7 12 12 O 1.21277 * 120.00101 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99815 * 180.02562 * 11 10 9 14 14 C 1.46497 * 119.99767 * 179.97438 * 13 11 10 15 15 C 1.50706 * 109.46994 * 179.97438 * 14 13 11 16 16 N 1.31805 * 119.09026 * 270.02340 * 15 14 13 17 17 C 1.32351 * 120.76536 * 179.97438 * 16 15 14 18 18 C 1.38575 * 119.02753 * 0.02562 * 17 16 15 19 19 C 1.38405 * 118.58609 * 0.02562 * 18 17 16 20 20 N 1.31765 * 119.08988 * 90.00239 * 15 14 13 21 21 C 1.51178 * 109.70775 * 179.97438 * 19 18 17 22 22 C 1.54668 * 105.20972 * 17.08208 * 21 19 18 23 23 C 1.51057 * 131.53215 * 180.02562 * 18 17 16 24 24 H 0.97006 * 119.99981 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47359 * 60.00215 * 9 7 2 26 26 H 1.09000 * 109.47366 * 299.99438 * 9 7 2 27 27 H 1.09000 * 109.47144 * 60.00480 * 10 9 7 28 28 H 1.08998 * 109.47078 * 299.99446 * 10 9 7 29 29 H 0.97000 * 119.99822 * 359.97438 * 13 11 10 30 30 H 1.09004 * 109.47136 * 60.00559 * 14 13 11 31 31 H 1.08998 * 109.47644 * 300.00297 * 14 13 11 32 32 H 1.07999 * 120.48924 * 179.97438 * 17 16 15 33 33 H 1.08997 * 110.29619 * 135.99225 * 21 19 18 34 34 H 1.08993 * 110.30391 * 258.04099 * 21 19 18 35 35 H 1.08995 * 110.89519 * 215.63306 * 22 21 19 36 36 H 1.09004 * 110.84214 * 92.02569 * 22 21 19 37 37 H 1.09002 * 110.30765 * 281.87994 * 23 18 17 38 38 H 1.09000 * 110.30696 * 43.94703 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1941 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5284 -2.6367 0.0011 12 8 6.1348 -1.5864 0.0016 13 7 6.2023 -3.8039 0.0007 14 6 7.6673 -3.8039 0.0013 15 6 8.1696 -5.2248 0.0013 16 7 8.3823 -5.8293 1.1531 17 6 8.8227 -7.0768 1.1918 18 6 9.0595 -7.7435 0.0003 19 6 8.8259 -7.0764 -1.1896 20 7 8.3837 -5.8286 -1.1501 21 6 9.1483 -7.9841 -2.3548 22 6 9.1862 -9.4110 -1.7592 23 6 9.5533 -9.1426 -0.2835 24 1 -0.4850 0.8401 -0.0004 25 1 3.8745 -0.6809 0.8906 26 1 3.8752 -0.6798 -0.8895 27 1 3.6584 -3.1503 -0.8904 28 1 3.6577 -3.1506 0.8897 29 1 5.7172 -4.6439 0.0000 30 1 8.0302 -3.2907 0.8919 31 1 8.0311 -3.2895 -0.8881 32 1 8.9958 -7.5677 2.1381 33 1 8.3712 -7.9130 -3.1158 34 1 10.1178 -7.7242 -2.7797 35 1 9.9524 -10.0149 -2.2452 36 1 8.2094 -9.8887 -1.8344 37 1 10.6333 -9.1976 -0.1466 38 1 9.0530 -9.8596 0.3674 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000909678021.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:07 Heat of formation + Delta-G solvation = -1.425370 kcal Electronic energy + Delta-G solvation = -19863.841195 eV Core-core repulsion = 16705.765274 eV Total energy + Delta-G solvation = -3158.075921 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.82004 -39.22957 -37.52034 -34.69682 -33.89061 -33.43593 -31.40463 -30.67605 -29.00635 -27.18969 -25.47441 -24.31430 -22.05360 -21.48353 -21.12536 -19.72617 -18.26211 -17.38686 -16.63466 -16.44515 -15.92648 -15.43932 -15.11516 -14.86529 -14.41194 -14.06133 -13.61198 -13.56085 -13.43698 -13.30111 -13.07631 -12.54746 -12.48018 -12.10876 -11.81390 -11.79731 -11.37946 -11.15600 -10.91979 -10.88620 -10.12717 -10.00628 -9.76195 -9.60966 -9.51128 -9.17877 -9.11350 -8.90466 -8.46928 -5.99385 -3.97912 0.41776 0.71889 3.05541 3.14737 3.26475 3.41634 3.47914 3.59520 3.59874 3.78818 3.92005 4.08554 4.27367 4.41915 4.54781 4.63528 4.76986 5.08402 5.10462 5.16457 5.26363 5.34131 5.36233 5.37581 5.42566 5.56283 5.63971 5.70995 6.01133 6.12361 6.14444 6.52972 6.62945 6.73199 7.40983 7.48235 7.73935 7.75571 7.83116 8.53372 8.66065 9.03784 9.63746 11.13471 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.039329 B = 0.002862 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.770639 B = 9779.848498 C = 9971.464126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.068 3.932 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.260 1.260 7 C -0.524 4.524 8 H 0.072 0.928 9 C 0.001 3.999 10 C -0.120 4.120 11 C 0.515 3.485 12 O -0.538 6.538 13 N -0.733 5.733 14 C 0.192 3.808 15 C 0.308 3.692 16 N -0.500 5.500 17 C 0.159 3.841 18 C -0.206 4.206 19 C 0.165 3.835 20 N -0.497 5.497 21 C -0.075 4.075 22 C -0.119 4.119 23 C -0.073 4.073 24 H 0.263 0.737 25 H 0.024 0.976 26 H 0.020 0.980 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.399 0.601 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.169 0.831 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.090 -22.700 -1.603 31.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.185 1.185 7 C -0.562 4.562 8 H 0.090 0.910 9 C -0.037 4.037 10 C -0.160 4.160 11 C 0.304 3.696 12 O -0.413 6.413 13 N -0.388 5.388 14 C 0.067 3.933 15 C 0.040 3.960 16 N -0.213 5.213 17 C -0.007 4.007 18 C -0.210 4.210 19 C 0.018 3.982 20 N -0.211 5.211 21 C -0.113 4.113 22 C -0.157 4.157 23 C -0.111 4.111 24 H 0.073 0.927 25 H 0.043 0.957 26 H 0.038 0.962 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.232 0.768 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.186 0.814 33 H 0.111 0.889 34 H 0.115 0.885 35 H 0.106 0.894 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 22.042 -20.816 -1.590 30.360 hybrid contribution 0.478 -0.445 0.068 0.657 sum 22.520 -21.262 -1.522 31.008 Atomic orbital electron populations 1.69915 1.06307 1.26940 1.51176 1.24975 0.94715 0.99254 0.94346 0.86787 0.80648 0.83333 0.78749 1.20239 1.21485 1.18457 1.21117 0.89292 0.94559 1.51242 0.90956 1.19381 0.96386 0.90149 0.97753 1.21670 0.87564 1.03357 1.03426 1.21547 0.91550 0.82374 0.74166 1.90660 1.70694 1.31263 1.48704 1.46028 1.05137 1.09657 1.78007 1.19823 0.81996 0.87151 1.04350 1.23122 0.93028 0.96835 0.83031 1.68389 1.12993 1.09857 1.30103 1.22781 0.90657 0.89348 0.97884 1.22299 1.02998 0.99777 0.95961 1.22254 0.90100 0.89666 0.96172 1.67559 1.12907 1.09771 1.30832 1.21130 1.03581 0.91761 0.94850 1.22412 1.03069 0.95620 0.94568 1.20905 1.01526 0.91426 0.97292 0.92748 0.95729 0.96174 0.89548 0.89516 0.76789 0.88921 0.89018 0.81400 0.88891 0.88522 0.89438 0.90255 0.89490 0.89817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.42 13.96 55.43 0.77 -27.65 16 2 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 3 Si 0.88 22.95 27.47 -169.99 -4.67 18.28 16 4 H -0.28 -7.12 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.26 -6.78 6.54 56.52 0.37 -6.41 16 7 C -0.52 -15.27 9.66 -34.44 -0.33 -15.61 16 8 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 9 C 0.00 0.03 3.33 -27.88 -0.09 -0.06 16 10 C -0.12 -2.42 5.64 -27.88 -0.16 -2.57 16 11 C 0.51 9.83 7.83 -10.98 -0.09 9.74 16 12 O -0.54 -12.23 15.98 5.56 0.09 -12.14 16 13 N -0.73 -11.04 5.55 -61.47 -0.34 -11.38 16 14 C 0.19 2.69 6.10 -5.19 -0.03 2.66 16 15 C 0.31 3.95 7.01 -157.21 -1.10 2.85 16 16 N -0.50 -6.03 10.34 -10.73 -0.11 -6.14 16 17 C 0.16 1.42 11.31 -17.20 -0.19 1.23 16 18 C -0.21 -1.64 6.20 -104.26 -0.65 -2.28 16 19 C 0.17 1.59 7.37 -82.03 -0.60 0.99 16 20 N -0.50 -6.20 10.34 -6.87 -0.07 -6.27 16 21 C -0.08 -0.45 6.77 -26.77 -0.18 -0.63 16 22 C -0.12 -0.44 7.10 -25.11 -0.18 -0.62 16 23 C -0.07 -0.32 6.76 -26.97 -0.18 -0.50 16 24 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 25 H 0.02 0.65 7.16 -51.93 -0.37 0.28 16 26 H 0.02 0.53 7.53 -51.93 -0.39 0.13 16 27 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 28 H 0.09 1.62 8.14 -51.93 -0.42 1.19 16 29 H 0.40 5.21 8.46 -40.82 -0.35 4.86 16 30 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.17 0.95 8.06 -52.49 -0.42 0.52 16 33 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 36 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 LS Contribution 323.87 15.07 4.88 4.88 Total: -1.00 -36.04 323.87 -8.68 -44.72 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -5.34 Total: -1.46 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: -3.89 Total: -2.85 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: 0.25 Total: -51.43 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.09 Total: -12.14 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -4.67 Total: 18.28 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -36.04 -8.68 -44.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909678021.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.297 kcal (2) G-P(sol) polarization free energy of solvation -36.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds