Wall clock time and date at job start Mon Mar 30 2020 01:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 120.00356 * 2 1 4 4 H 1.48500 * 109.47207 * 270.00429 * 3 2 1 5 5 H 1.48500 * 109.46910 * 29.99831 * 3 2 1 6 6 H 1.48494 * 109.47249 * 149.99988 * 3 2 1 7 7 C 1.37881 * 119.99946 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99746 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99951 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.46800 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.46817 * 180.02562 * 10 9 7 12 12 O 1.21277 * 120.00101 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99815 * 180.02562 * 11 10 9 14 14 C 1.46497 * 119.99767 * 179.97438 * 13 11 10 15 15 C 1.50706 * 109.46994 * 179.97438 * 14 13 11 16 16 N 1.31805 * 119.09026 * 270.02340 * 15 14 13 17 17 C 1.32351 * 120.76536 * 179.97438 * 16 15 14 18 18 C 1.38575 * 119.02753 * 0.02562 * 17 16 15 19 19 C 1.38405 * 118.58609 * 0.02562 * 18 17 16 20 20 N 1.31765 * 119.08988 * 90.00239 * 15 14 13 21 21 C 1.51178 * 109.70775 * 179.97438 * 19 18 17 22 22 C 1.54668 * 105.20972 * 17.08208 * 21 19 18 23 23 C 1.51057 * 131.53215 * 180.02562 * 18 17 16 24 24 H 0.97006 * 119.99981 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47359 * 60.00215 * 9 7 2 26 26 H 1.09000 * 109.47366 * 299.99438 * 9 7 2 27 27 H 1.09000 * 109.47144 * 60.00480 * 10 9 7 28 28 H 1.08998 * 109.47078 * 299.99446 * 10 9 7 29 29 H 0.97000 * 119.99822 * 359.97438 * 13 11 10 30 30 H 1.09004 * 109.47136 * 60.00559 * 14 13 11 31 31 H 1.08998 * 109.47644 * 300.00297 * 14 13 11 32 32 H 1.07999 * 120.48924 * 179.97438 * 17 16 15 33 33 H 1.08997 * 110.29619 * 135.99225 * 21 19 18 34 34 H 1.08993 * 110.30391 * 258.04099 * 21 19 18 35 35 H 1.08995 * 110.89519 * 215.63306 * 22 21 19 36 36 H 1.09004 * 110.84214 * 92.02569 * 22 21 19 37 37 H 1.09002 * 110.30765 * 281.87994 * 23 18 17 38 38 H 1.09000 * 110.30696 * 43.94703 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1941 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5284 -2.6367 0.0011 12 8 6.1348 -1.5864 0.0016 13 7 6.2023 -3.8039 0.0007 14 6 7.6673 -3.8039 0.0013 15 6 8.1696 -5.2248 0.0013 16 7 8.3823 -5.8293 1.1531 17 6 8.8227 -7.0768 1.1918 18 6 9.0595 -7.7435 0.0003 19 6 8.8259 -7.0764 -1.1896 20 7 8.3837 -5.8286 -1.1501 21 6 9.1483 -7.9841 -2.3548 22 6 9.1862 -9.4110 -1.7592 23 6 9.5533 -9.1426 -0.2835 24 1 -0.4850 0.8401 -0.0004 25 1 3.8745 -0.6809 0.8906 26 1 3.8752 -0.6798 -0.8895 27 1 3.6584 -3.1503 -0.8904 28 1 3.6577 -3.1506 0.8897 29 1 5.7172 -4.6439 0.0000 30 1 8.0302 -3.2907 0.8919 31 1 8.0311 -3.2895 -0.8881 32 1 8.9958 -7.5677 2.1381 33 1 8.3712 -7.9130 -3.1158 34 1 10.1178 -7.7242 -2.7797 35 1 9.9524 -10.0149 -2.2452 36 1 8.2094 -9.8887 -1.8344 37 1 10.6333 -9.1976 -0.1466 38 1 9.0530 -9.8596 0.3674 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000909678021.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:07 Heat of formation + Delta-G solvation = -27.021196 kcal Electronic energy + Delta-G solvation = -19864.951113 eV Core-core repulsion = 16705.765274 eV Total energy + Delta-G solvation = -3159.185839 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.55110 -40.72300 -38.15648 -35.94545 -35.50903 -34.71665 -33.36936 -31.58302 -29.72247 -28.45378 -26.93703 -25.03028 -23.33760 -22.58661 -21.86471 -21.32201 -19.28015 -19.00933 -17.95520 -17.48177 -17.00653 -16.68779 -16.24986 -16.23279 -15.49121 -15.22988 -14.89681 -14.80088 -14.63536 -14.23293 -14.04030 -13.85654 -13.72700 -13.40550 -13.03799 -12.88895 -12.24521 -12.14172 -12.11720 -11.97201 -11.83101 -11.76707 -11.62181 -11.40669 -10.92904 -10.77955 -10.29664 -10.24598 -10.08537 -8.31351 -6.34388 -0.34660 0.00581 1.34327 1.35877 1.51593 1.61707 2.00157 2.35778 2.50012 2.73811 2.91474 3.04327 3.42125 3.53482 3.67772 3.88205 4.05961 4.15503 4.23802 4.27957 4.37247 4.47687 4.52894 4.71388 4.75223 4.79636 4.89257 4.96980 4.99877 5.14955 5.20701 5.29523 5.34492 5.37026 5.44117 5.60627 5.89935 6.23031 6.41606 6.71557 6.96115 7.17944 7.30889 8.84364 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.039329 B = 0.002862 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.770639 B = 9779.848498 C = 9971.464126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.013 3.987 3 Si 0.939 3.061 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.261 1.261 7 C -0.530 4.530 8 H 0.049 0.951 9 C 0.005 3.995 10 C -0.114 4.114 11 C 0.521 3.479 12 O -0.578 6.578 13 N -0.713 5.713 14 C 0.196 3.804 15 C 0.289 3.711 16 N -0.521 5.521 17 C 0.147 3.853 18 C -0.192 4.192 19 C 0.141 3.859 20 N -0.522 5.522 21 C -0.077 4.077 22 C -0.111 4.111 23 C -0.070 4.070 24 H 0.268 0.732 25 H 0.012 0.988 26 H 0.011 0.989 27 H 0.102 0.898 28 H 0.103 0.897 29 H 0.410 0.590 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.201 0.799 33 H 0.090 0.910 34 H 0.107 0.893 35 H 0.112 0.888 36 H 0.081 0.919 37 H 0.106 0.894 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.033 -24.954 -1.631 34.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.185 4.185 3 Si 0.764 3.236 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.185 1.185 7 C -0.568 4.568 8 H 0.068 0.932 9 C -0.033 4.033 10 C -0.154 4.154 11 C 0.310 3.690 12 O -0.458 6.458 13 N -0.367 5.367 14 C 0.071 3.929 15 C 0.021 3.979 16 N -0.235 5.235 17 C -0.017 4.017 18 C -0.196 4.196 19 C -0.005 4.005 20 N -0.237 5.237 21 C -0.114 4.114 22 C -0.148 4.148 23 C -0.108 4.108 24 H 0.076 0.924 25 H 0.031 0.969 26 H 0.029 0.971 27 H 0.121 0.879 28 H 0.121 0.879 29 H 0.246 0.754 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.217 0.783 33 H 0.108 0.892 34 H 0.125 0.875 35 H 0.131 0.869 36 H 0.100 0.900 37 H 0.124 0.876 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 23.997 -23.138 -1.621 33.375 hybrid contribution -0.095 0.069 0.068 0.136 sum 23.902 -23.069 -1.553 33.255 Atomic orbital electron populations 1.70024 1.07798 1.28126 1.52498 1.25815 0.95522 1.02914 0.94217 0.85810 0.79261 0.79360 0.79191 1.19314 1.20305 1.18478 1.21417 0.91195 0.93739 1.50405 0.93234 1.19235 0.93976 0.93492 0.96603 1.21496 0.88585 1.00235 1.05084 1.21202 0.91054 0.82760 0.73994 1.90645 1.71238 1.32848 1.51029 1.45757 1.05955 1.08952 1.76006 1.19735 0.80744 0.88689 1.03714 1.22667 0.95031 0.96396 0.83772 1.68332 1.13843 1.11492 1.29836 1.23359 0.90087 0.88502 0.99770 1.22768 1.00677 1.01269 0.94870 1.22982 0.89894 0.89143 0.98529 1.67490 1.13925 1.11454 1.30824 1.21311 1.03897 0.92417 0.93807 1.22459 1.04146 0.94197 0.94030 1.21066 1.02655 0.89148 0.97957 0.92350 0.96935 0.97069 0.87931 0.87908 0.75424 0.89457 0.89746 0.78254 0.89198 0.87473 0.86950 0.90037 0.87628 0.87990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.98 13.96 21.45 0.30 -59.68 16 2 C 0.01 0.78 5.47 84.66 0.46 1.25 16 3 Si 0.94 47.60 27.47 68.60 1.88 49.48 16 4 H -0.27 -13.13 7.11 99.48 0.71 -12.42 16 5 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 6 H -0.26 -13.13 6.54 99.48 0.65 -12.48 16 7 C -0.53 -31.23 9.66 25.60 0.25 -30.98 16 8 H 0.05 3.07 7.99 -2.91 -0.02 3.05 16 9 C 0.00 0.25 3.33 29.85 0.10 0.35 16 10 C -0.11 -4.54 5.64 29.85 0.17 -4.37 16 11 C 0.52 19.80 7.83 87.66 0.69 20.49 16 12 O -0.58 -26.53 15.98 -3.02 -0.05 -26.58 16 13 N -0.71 -21.26 5.55 -466.77 -2.59 -23.85 16 14 C 0.20 5.58 6.10 85.64 0.52 6.10 16 15 C 0.29 7.40 7.01 138.76 0.97 8.38 16 16 N -0.52 -12.17 10.34 -187.86 -1.94 -14.12 16 17 C 0.15 2.34 11.31 84.70 0.96 3.30 16 18 C -0.19 -2.58 6.20 -19.63 -0.12 -2.70 16 19 C 0.14 2.52 7.37 42.66 0.31 2.83 16 20 N -0.52 -12.88 10.34 -175.63 -1.82 -14.70 16 21 C -0.08 -0.75 6.77 30.57 0.21 -0.54 16 22 C -0.11 -0.42 7.10 31.64 0.22 -0.19 16 23 C -0.07 -0.33 6.76 30.44 0.21 -0.12 16 24 H 0.27 15.86 8.31 -92.70 -0.77 15.09 16 25 H 0.01 0.66 7.16 -2.38 -0.02 0.64 16 26 H 0.01 0.58 7.53 -2.39 -0.02 0.56 16 27 H 0.10 3.73 8.14 -2.39 -0.02 3.71 16 28 H 0.10 3.74 8.14 -2.39 -0.02 3.72 16 29 H 0.41 10.40 8.46 -92.71 -0.78 9.62 16 30 H 0.09 2.56 8.14 -2.38 -0.02 2.54 16 31 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 32 H 0.20 1.67 8.06 -2.91 -0.02 1.65 16 33 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.11 -0.07 8.14 -2.39 -0.02 -0.09 16 36 H 0.08 0.30 8.14 -2.39 -0.02 0.29 16 37 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 38 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 Total: -1.00 -78.97 323.87 0.97 -78.00 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: 0.23 Total: 7.65 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: 4.95 Total: 3.79 kcal Atomic # 7 Polarization: -106.29 SS G_CDS: -6.05 Total: -112.34 kcal Atomic # 8 Polarization: -26.53 SS G_CDS: -0.05 Total: -26.58 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 1.88 Total: 49.48 kcal Total: -78.97 0.97 -78.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909678021.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.978 kcal (2) G-P(sol) polarization free energy of solvation -78.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds