Wall clock time and date at job start Mon Mar 30 2020 01:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 114.00283 * 2 1 4 4 C 1.53002 * 109.47128 * 179.97438 * 3 2 1 5 5 C 1.53500 * 114.20475 * 184.99899 * 4 3 2 6 6 N 1.47067 * 87.98494 * 220.15037 * 5 4 3 7 7 C 1.34777 * 136.05685 * 207.08347 * 6 5 4 8 8 O 1.21613 * 120.00116 * 4.53640 * 7 6 5 9 9 C 1.47439 * 119.99956 * 184.52902 * 7 6 5 10 10 C 1.39229 * 120.28022 * 25.54777 * 9 7 6 11 11 C 1.38217 * 120.09329 * 179.97438 * 10 9 7 12 12 C 1.38834 * 120.67297 * 0.02562 * 11 10 9 13 13 C 1.37593 * 120.56903 * 359.97438 * 12 11 10 14 14 C 1.40705 * 119.88706 * 359.97438 * 13 12 11 15 15 C 1.40883 * 120.32979 * 180.02562 * 14 13 12 16 16 H 1.08007 * 120.00156 * 141.52673 * 15 14 13 17 17 C 1.40274 * 119.99911 * 321.52123 * 15 14 13 18 18 N 1.30631 * 120.00100 * 173.41819 * 17 15 14 19 19 Si 1.86794 * 120.00232 * 353.41747 * 17 15 14 20 20 H 1.48498 * 109.47307 * 89.73720 * 19 17 15 21 21 H 1.48498 * 109.47317 * 209.74167 * 19 17 15 22 22 H 1.48510 * 109.46989 * 329.73723 * 19 17 15 23 23 C 1.47068 * 87.88591 * 27.34276 * 6 5 4 24 24 H 1.09001 * 109.46989 * 59.99360 * 1 2 3 25 25 H 1.08995 * 109.47080 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46454 * 300.00046 * 1 2 3 27 27 H 1.09003 * 109.47019 * 60.00693 * 3 2 1 28 28 H 1.08993 * 109.47586 * 299.99941 * 3 2 1 29 29 H 1.09001 * 113.28375 * 318.07072 * 4 3 2 30 30 H 1.09005 * 113.46411 * 105.37351 * 5 4 3 31 31 H 1.08997 * 113.47102 * 334.93258 * 5 4 3 32 32 H 1.08001 * 119.95176 * 359.96976 * 10 9 7 33 33 H 1.07997 * 119.66286 * 179.97438 * 11 10 9 34 34 H 1.07990 * 119.71122 * 179.72442 * 12 11 10 35 35 H 1.08007 * 120.05513 * 179.97438 * 13 12 11 36 36 H 0.97003 * 120.00509 * 180.02562 * 18 17 15 37 37 H 1.09000 * 113.46311 * 87.43408 * 23 6 5 38 38 H 1.08998 * 113.47015 * 217.87407 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 4.2730 2.5252 0.1227 6 7 5.2403 2.0238 -0.8651 7 6 6.5366 2.2509 -1.1559 8 8 7.1966 2.9922 -0.4531 9 6 7.1547 1.6005 -2.3258 10 6 6.3697 1.2063 -3.4060 11 6 6.9532 0.5973 -4.5011 12 6 8.3224 0.3707 -4.5394 13 6 9.1240 0.7491 -3.4871 14 6 8.5551 1.3719 -2.3609 15 6 9.3673 1.7637 -1.2785 16 1 9.1678 2.6907 -0.7615 17 6 10.4350 0.9496 -0.8721 18 7 11.2652 1.3705 0.0444 19 14 10.6696 -0.7362 -1.6415 20 1 11.5357 -0.6164 -2.8417 21 1 11.3106 -1.6447 -0.6571 22 1 9.3488 -1.2879 -2.0372 23 6 4.1688 1.1704 -1.4004 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5139 0.8900 27 1 1.6888 1.8463 0.8901 28 1 1.6888 1.8464 -0.8899 29 1 3.9059 0.4081 0.6700 30 1 4.7070 2.6937 1.1083 31 1 3.6905 3.3751 -0.2328 32 1 5.3033 1.3765 -3.3882 33 1 6.3376 0.2939 -5.3350 34 1 8.7613 -0.1103 -5.4009 35 1 10.1882 0.5685 -3.5256 36 1 12.0037 0.8078 0.3252 37 1 3.5588 1.6632 -2.1574 38 1 4.5140 0.1847 -1.7125 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000911967042.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:56 Heat of formation + Delta-G solvation = -16.532726 kcal Electronic energy + Delta-G solvation = -20982.226090 eV Core-core repulsion = 17791.202314 eV Total energy + Delta-G solvation = -3191.023776 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.11879 -38.28867 -37.45894 -36.36315 -33.63442 -31.14268 -30.48202 -29.74708 -27.19455 -25.80434 -25.63632 -24.77532 -22.24057 -21.07914 -20.35112 -18.64196 -17.45183 -16.68456 -16.56057 -16.18894 -15.72197 -15.47638 -14.98601 -14.33641 -14.12291 -13.73550 -13.56679 -13.42178 -12.73733 -12.66062 -12.50889 -12.24934 -11.96905 -11.84770 -11.72217 -11.49111 -11.10861 -10.94730 -10.73235 -10.47324 -10.38465 -10.11600 -9.83375 -9.74955 -9.24696 -8.58505 -8.12921 -7.81932 -7.60195 -6.87782 -4.51159 2.11809 2.60004 3.08856 3.17289 3.28277 3.35462 3.58549 3.88987 3.98247 4.38353 4.56054 4.88706 5.02900 5.07366 5.14410 5.22674 5.33608 5.36040 5.44055 5.46678 5.53574 5.63940 5.76015 5.84327 5.93115 6.00298 6.19245 6.30710 6.49257 6.60908 6.78794 6.97324 7.11699 7.24139 7.40932 7.58698 7.78585 8.00696 8.34004 8.51836 8.62863 8.87740 9.25634 10.09982 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.021283 B = 0.004954 C = 0.004600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.264797 B = 5650.814589 C = 6086.041154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.074 3.926 4 C -0.127 4.127 5 C 0.114 3.886 6 N -0.654 5.654 7 C 0.599 3.401 8 O -0.527 6.527 9 C -0.240 4.240 10 C -0.044 4.044 11 C -0.251 4.251 12 C -0.066 4.066 13 C -0.226 4.226 14 C 0.123 3.877 15 C -0.420 4.420 16 H 0.123 0.877 17 C 0.080 3.920 18 N -0.798 5.798 19 Si 0.906 3.094 20 H -0.267 1.267 21 H -0.289 1.289 22 H -0.243 1.243 23 C 0.110 3.890 24 H 0.040 0.960 25 H 0.084 0.916 26 H 0.040 0.960 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.112 0.888 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.286 0.714 37 H 0.076 0.924 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.714 -3.010 -1.679 17.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C -0.003 4.003 4 C -0.147 4.147 5 C -0.010 4.010 6 N -0.392 5.392 7 C 0.395 3.605 8 O -0.404 6.404 9 C -0.244 4.244 10 C -0.062 4.062 11 C -0.270 4.270 12 C -0.084 4.084 13 C -0.245 4.245 14 C 0.118 3.882 15 C -0.448 4.448 16 H 0.141 0.859 17 C -0.140 4.140 18 N -0.421 5.421 19 Si 0.732 3.268 20 H -0.193 1.193 21 H -0.216 1.216 22 H -0.166 1.166 23 C -0.014 4.014 24 H 0.059 0.941 25 H 0.103 0.897 26 H 0.058 0.942 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.130 0.870 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.124 0.876 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -15.723 -2.700 -1.138 15.994 hybrid contribution -0.048 -0.510 -0.381 0.638 sum -15.771 -3.209 -1.519 16.166 Atomic orbital electron populations 1.22731 0.81226 1.02701 0.99861 1.87919 1.19472 1.27945 1.95390 1.22438 0.92634 0.84745 1.00461 1.23091 0.92563 0.99648 0.99355 1.22709 0.88472 0.95042 0.94751 1.49508 1.08225 1.45486 1.36014 1.17965 0.77701 0.80476 0.84382 1.90706 1.59717 1.38186 1.51809 1.19353 0.93702 1.15542 0.95835 1.20914 0.97289 0.94757 0.93278 1.20320 0.94751 1.11996 0.99968 1.20753 0.93880 0.96851 0.96938 1.21171 0.98443 1.09593 0.95309 1.17539 0.90152 0.88274 0.92187 1.20163 1.05689 1.07843 1.11090 0.85913 1.26336 0.93109 1.00650 0.93892 1.69556 1.10988 1.37739 1.23866 0.86407 0.80700 0.81247 0.78410 1.19312 1.21633 1.16623 1.23028 0.87033 0.96166 0.95187 0.94110 0.89708 0.94184 0.92750 0.92795 0.86977 0.90423 0.90622 0.88262 0.88447 0.88483 0.87610 0.90280 0.90574 0.90071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.39 -4.27 10.70 -35.23 -0.38 -4.65 16 3 C 0.07 0.72 5.86 37.16 0.22 0.94 16 4 C -0.13 -1.56 4.37 -89.97 -0.39 -1.95 16 5 C 0.11 1.61 8.19 -8.50 -0.07 1.54 16 6 N -0.65 -12.18 3.64 -186.30 -0.68 -12.85 16 7 C 0.60 14.41 7.67 -12.51 -0.10 14.31 16 8 O -0.53 -14.69 14.80 5.27 0.08 -14.61 16 9 C -0.24 -5.84 5.88 -104.36 -0.61 -6.46 16 10 C -0.04 -0.91 8.82 -39.22 -0.35 -1.25 16 11 C -0.25 -5.03 10.03 -39.37 -0.39 -5.43 16 12 C -0.07 -1.38 10.01 -39.60 -0.40 -1.78 16 13 C -0.23 -5.44 6.96 -38.89 -0.27 -5.71 16 14 C 0.12 3.25 5.03 -106.55 -0.54 2.71 16 15 C -0.42 -12.10 8.55 -37.82 -0.32 -12.42 16 16 H 0.12 3.93 5.95 -52.48 -0.31 3.61 16 17 C 0.08 2.17 5.50 -17.30 -0.10 2.08 16 18 N -0.80 -22.10 13.92 55.56 0.77 -21.33 16 19 Si 0.91 21.00 24.50 -169.99 -4.16 16.83 16 20 H -0.27 -5.89 6.71 56.52 0.38 -5.51 16 21 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 22 H -0.24 -5.74 6.71 56.52 0.38 -5.36 16 23 C 0.11 1.55 5.71 -8.36 -0.05 1.50 16 24 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.45 7.81 -51.93 -0.41 0.05 16 29 H 0.11 1.48 8.14 -51.93 -0.42 1.06 16 30 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 32 H 0.10 1.75 5.74 -52.49 -0.30 1.45 16 33 H 0.10 1.66 8.06 -52.49 -0.42 1.23 16 34 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 35 H 0.11 2.50 4.95 -52.48 -0.26 2.24 16 36 H 0.29 7.12 8.29 -40.82 -0.34 6.78 16 37 H 0.08 0.91 7.69 -51.93 -0.40 0.51 16 38 H 0.08 1.21 7.75 -51.93 -0.40 0.81 16 LS Contribution 312.94 15.07 4.72 4.72 Total: -1.00 -32.37 312.94 -6.97 -39.34 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -5.06 Total: 3.13 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: -2.25 Total: -10.58 kcal Atomic # 7 Polarization: -34.27 SS G_CDS: 0.09 Total: -34.18 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.30 Total: -19.26 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.16 Total: 16.83 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.37 -6.97 -39.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911967042.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.803 kcal (2) G-P(sol) polarization free energy of solvation -32.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds