Wall clock time and date at job start Mon Mar 30 2020 01:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 114.00283 * 2 1 4 4 C 1.53002 * 109.47128 * 179.97438 * 3 2 1 5 5 C 1.53500 * 114.20475 * 184.99899 * 4 3 2 6 6 N 1.47067 * 87.98494 * 220.15037 * 5 4 3 7 7 C 1.34777 * 136.05685 * 207.08347 * 6 5 4 8 8 O 1.21613 * 120.00116 * 4.53640 * 7 6 5 9 9 C 1.47439 * 119.99956 * 184.52902 * 7 6 5 10 10 C 1.39229 * 120.28022 * 25.54777 * 9 7 6 11 11 C 1.38217 * 120.09329 * 179.97438 * 10 9 7 12 12 C 1.38834 * 120.67297 * 0.02562 * 11 10 9 13 13 C 1.37593 * 120.56903 * 359.97438 * 12 11 10 14 14 C 1.40705 * 119.88706 * 359.97438 * 13 12 11 15 15 C 1.40883 * 120.32979 * 180.02562 * 14 13 12 16 16 H 1.08007 * 120.00156 * 141.52673 * 15 14 13 17 17 C 1.40274 * 119.99911 * 321.52123 * 15 14 13 18 18 N 1.30631 * 120.00100 * 173.41819 * 17 15 14 19 19 Si 1.86794 * 120.00232 * 353.41747 * 17 15 14 20 20 H 1.48498 * 109.47307 * 89.73720 * 19 17 15 21 21 H 1.48498 * 109.47317 * 209.74167 * 19 17 15 22 22 H 1.48510 * 109.46989 * 329.73723 * 19 17 15 23 23 C 1.47068 * 87.88591 * 27.34276 * 6 5 4 24 24 H 1.09001 * 109.46989 * 59.99360 * 1 2 3 25 25 H 1.08995 * 109.47080 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46454 * 300.00046 * 1 2 3 27 27 H 1.09003 * 109.47019 * 60.00693 * 3 2 1 28 28 H 1.08993 * 109.47586 * 299.99941 * 3 2 1 29 29 H 1.09001 * 113.28375 * 318.07072 * 4 3 2 30 30 H 1.09005 * 113.46411 * 105.37351 * 5 4 3 31 31 H 1.08997 * 113.47102 * 334.93258 * 5 4 3 32 32 H 1.08001 * 119.95176 * 359.96976 * 10 9 7 33 33 H 1.07997 * 119.66286 * 179.97438 * 11 10 9 34 34 H 1.07990 * 119.71122 * 179.72442 * 12 11 10 35 35 H 1.08007 * 120.05513 * 179.97438 * 13 12 11 36 36 H 0.97003 * 120.00509 * 180.02562 * 18 17 15 37 37 H 1.09000 * 113.46311 * 87.43408 * 23 6 5 38 38 H 1.08998 * 113.47015 * 217.87407 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 4.2730 2.5252 0.1227 6 7 5.2403 2.0238 -0.8651 7 6 6.5366 2.2509 -1.1559 8 8 7.1966 2.9922 -0.4531 9 6 7.1547 1.6005 -2.3258 10 6 6.3697 1.2063 -3.4060 11 6 6.9532 0.5973 -4.5011 12 6 8.3224 0.3707 -4.5394 13 6 9.1240 0.7491 -3.4871 14 6 8.5551 1.3719 -2.3609 15 6 9.3673 1.7637 -1.2785 16 1 9.1678 2.6907 -0.7615 17 6 10.4350 0.9496 -0.8721 18 7 11.2652 1.3705 0.0444 19 14 10.6696 -0.7362 -1.6415 20 1 11.5357 -0.6164 -2.8417 21 1 11.3106 -1.6447 -0.6571 22 1 9.3488 -1.2879 -2.0372 23 6 4.1688 1.1704 -1.4004 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5139 0.8900 27 1 1.6888 1.8463 0.8901 28 1 1.6888 1.8464 -0.8899 29 1 3.9059 0.4081 0.6700 30 1 4.7070 2.6937 1.1083 31 1 3.6905 3.3751 -0.2328 32 1 5.3033 1.3765 -3.3882 33 1 6.3376 0.2939 -5.3350 34 1 8.7613 -0.1103 -5.4009 35 1 10.1882 0.5685 -3.5256 36 1 12.0037 0.8078 0.3252 37 1 3.5588 1.6632 -2.1574 38 1 4.5140 0.1847 -1.7125 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000911967042.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:56 Heat of formation + Delta-G solvation = -39.909234 kcal Electronic energy + Delta-G solvation = -20983.239772 eV Core-core repulsion = 17791.202314 eV Total energy + Delta-G solvation = -3192.037457 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.50596 -39.80442 -38.59089 -37.97128 -35.55537 -32.69145 -32.33230 -31.14790 -28.20767 -27.13583 -26.98861 -26.00826 -23.87282 -22.80786 -21.59566 -20.16866 -19.36578 -18.16855 -17.51029 -17.40222 -17.01903 -16.70951 -16.44171 -15.83901 -15.73727 -15.30214 -15.08167 -14.73682 -14.45720 -14.04881 -13.93485 -13.63206 -13.47505 -13.31977 -12.85624 -12.71190 -12.50339 -12.46867 -12.21808 -12.03442 -11.94514 -11.66158 -11.47948 -11.09550 -10.53805 -10.38873 -9.70500 -9.51112 -9.45057 -8.83604 -6.55778 0.33106 0.80382 1.21737 1.34797 1.44401 1.96481 2.07784 2.15574 2.64965 2.78045 3.37890 3.46510 3.80203 4.00968 4.17851 4.26275 4.29479 4.38379 4.45520 4.52667 4.56462 4.61743 4.62718 4.67800 4.68632 4.77679 4.85733 4.95463 4.95980 5.07982 5.27126 5.28324 5.47103 5.67095 5.84196 5.95350 6.22934 6.31927 6.40731 6.67989 6.73853 6.91649 7.47931 8.21836 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.021283 B = 0.004954 C = 0.004600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.264797 B = 5650.814589 C = 6086.041154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.416 6.416 3 C 0.081 3.919 4 C -0.108 4.108 5 C 0.108 3.892 6 N -0.663 5.663 7 C 0.586 3.414 8 O -0.587 6.587 9 C -0.258 4.258 10 C -0.043 4.043 11 C -0.225 4.225 12 C -0.062 4.062 13 C -0.245 4.245 14 C 0.104 3.896 15 C -0.470 4.470 16 H 0.067 0.933 17 C 0.036 3.964 18 N -0.855 5.855 19 Si 0.970 3.030 20 H -0.245 1.245 21 H -0.279 1.279 22 H -0.249 1.249 23 C 0.106 3.894 24 H 0.054 0.946 25 H 0.091 0.909 26 H 0.050 0.950 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.061 0.939 31 H 0.110 0.890 32 H 0.137 0.863 33 H 0.147 0.853 34 H 0.141 0.859 35 H 0.105 0.895 36 H 0.293 0.707 37 H 0.114 0.886 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.450 -5.046 -4.993 21.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.336 6.336 3 C 0.004 3.996 4 C -0.127 4.127 5 C -0.014 4.014 6 N -0.399 5.399 7 C 0.381 3.619 8 O -0.469 6.469 9 C -0.262 4.262 10 C -0.062 4.062 11 C -0.243 4.243 12 C -0.080 4.080 13 C -0.264 4.264 14 C 0.100 3.900 15 C -0.500 4.500 16 H 0.085 0.915 17 C -0.177 4.177 18 N -0.482 5.482 19 Si 0.791 3.209 20 H -0.170 1.170 21 H -0.205 1.205 22 H -0.172 1.172 23 C -0.016 4.016 24 H 0.073 0.927 25 H 0.110 0.890 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.114 0.886 30 H 0.080 0.920 31 H 0.128 0.872 32 H 0.154 0.846 33 H 0.165 0.835 34 H 0.158 0.842 35 H 0.123 0.877 36 H 0.104 0.896 37 H 0.132 0.868 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -19.538 -4.750 -4.468 20.598 hybrid contribution 0.726 0.155 0.497 0.893 sum -18.812 -4.596 -3.972 19.768 Atomic orbital electron populations 1.22915 0.79377 1.03666 1.01048 1.87868 1.21493 1.28564 1.95667 1.22386 0.90017 0.84817 1.02409 1.22846 0.94741 0.97514 0.97598 1.23050 0.87595 0.97475 0.93305 1.49532 1.07606 1.45717 1.37052 1.18138 0.79444 0.80056 0.84240 1.90683 1.61859 1.40826 1.53494 1.19790 0.93731 1.15269 0.97446 1.21314 0.98921 0.93813 0.92115 1.20988 0.94807 1.08292 1.00245 1.21277 0.94350 0.95440 0.96900 1.21290 0.99094 1.10400 0.95614 1.17786 0.91063 0.88959 0.92199 1.19925 1.08834 1.07767 1.13449 0.91481 1.27118 0.92405 1.04060 0.94165 1.69619 1.12560 1.39622 1.26374 0.85464 0.80484 0.76462 0.78453 1.16963 1.20537 1.17232 1.23414 0.85539 0.95455 0.97143 0.92741 0.89014 0.93133 0.91098 0.90529 0.88582 0.92035 0.87220 0.84572 0.83483 0.84170 0.87731 0.89615 0.86848 0.90601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.54 16 2 O -0.42 -7.78 10.70 -148.98 -1.59 -9.38 16 3 C 0.08 1.24 5.86 71.98 0.42 1.67 16 4 C -0.11 -2.39 4.37 -10.37 -0.05 -2.43 16 5 C 0.11 2.93 8.19 83.18 0.68 3.61 16 6 N -0.66 -24.36 3.64 -861.59 -3.14 -27.50 16 7 C 0.59 29.32 7.67 86.67 0.66 29.98 16 8 O -0.59 -35.56 14.80 -4.07 -0.06 -35.62 16 9 C -0.26 -12.64 5.88 -19.70 -0.12 -12.76 16 10 C -0.04 -1.64 8.82 22.50 0.20 -1.44 16 11 C -0.22 -7.69 10.03 22.41 0.22 -7.47 16 12 C -0.06 -2.31 10.01 22.26 0.22 -2.09 16 13 C -0.24 -11.52 6.96 22.72 0.16 -11.36 16 14 C 0.10 5.65 5.03 -21.11 -0.11 5.54 16 15 C -0.47 -29.41 8.55 23.41 0.20 -29.21 16 16 H 0.07 4.82 5.95 -2.91 -0.02 4.81 16 17 C 0.04 2.08 5.50 85.37 0.47 2.55 16 18 N -0.85 -51.31 13.92 21.88 0.30 -51.01 16 19 Si 0.97 44.56 24.50 68.60 1.68 46.24 16 20 H -0.25 -10.23 6.71 99.48 0.67 -9.56 16 21 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 22 H -0.25 -11.44 6.71 99.48 0.67 -10.77 16 23 C 0.11 2.67 5.71 83.27 0.48 3.14 16 24 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 25 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.08 0.87 7.81 -2.39 -0.02 0.85 16 29 H 0.10 2.45 8.14 -2.39 -0.02 2.44 16 30 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 31 H 0.11 2.27 8.10 -2.39 -0.02 2.25 16 32 H 0.14 4.09 5.74 -2.91 -0.02 4.07 16 33 H 0.15 3.73 8.06 -2.91 -0.02 3.71 16 34 H 0.14 4.11 8.06 -2.92 -0.02 4.09 16 35 H 0.10 4.86 4.95 -2.91 -0.01 4.85 16 36 H 0.29 15.67 8.29 -92.71 -0.77 14.91 16 37 H 0.11 2.07 7.69 -2.39 -0.02 2.06 16 38 H 0.08 2.02 7.75 -2.39 -0.02 2.00 16 Total: -1.00 -80.06 312.94 2.88 -77.18 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: 0.99 Total: 18.81 kcal Atomic # 6 Polarization: -23.42 SS G_CDS: 4.70 Total: -18.72 kcal Atomic # 7 Polarization: -75.67 SS G_CDS: -2.84 Total: -78.51 kcal Atomic # 8 Polarization: -43.34 SS G_CDS: -1.65 Total: -44.99 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.68 Total: 46.24 kcal Total: -80.06 2.88 -77.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911967042.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.272 kcal (2) G-P(sol) polarization free energy of solvation -80.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds