Wall clock time and date at job start Mon Mar 30 2020 01:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86805 * 119.99741 * 2 1 4 4 H 1.48497 * 109.47185 * 269.99749 * 3 2 1 5 5 H 1.48496 * 109.47266 * 30.00054 * 3 2 1 6 6 H 1.48502 * 109.47012 * 149.99533 * 3 2 1 7 7 C 1.37878 * 120.00287 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99504 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99917 * 180.02562 * 7 2 1 10 10 N 1.46502 * 109.46388 * 180.02562 * 9 7 2 11 11 C 1.34783 * 119.99417 * 180.02562 * 10 9 7 12 12 O 1.21580 * 120.00116 * 359.97438 * 11 10 9 13 13 N 1.34772 * 119.99719 * 180.02562 * 11 10 9 14 14 C 1.46502 * 119.99948 * 179.97438 * 13 11 10 15 15 H 1.09000 * 109.46995 * 34.99738 * 14 13 11 16 16 C 1.50702 * 109.47103 * 154.99701 * 14 13 11 17 17 C 1.38225 * 119.61833 * 244.99911 * 16 14 13 18 18 C 1.38635 * 119.15939 * 180.02562 * 17 16 14 19 19 C 1.38675 * 118.41956 * 0.02562 * 18 17 16 20 20 C 1.38186 * 119.16332 * 0.27967 * 19 18 17 21 21 N 1.31860 * 119.61626 * 65.02589 * 16 14 13 22 22 C 1.53002 * 109.47114 * 275.00044 * 14 13 11 23 23 C 1.52996 * 117.49865 * 128.74703 * 22 14 13 24 24 C 1.52995 * 117.49793 * 60.08384 * 22 14 13 25 25 H 0.97004 * 119.99780 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.47217 * 60.00377 * 9 7 2 27 27 H 1.08990 * 109.47045 * 300.00085 * 9 7 2 28 28 H 0.96992 * 120.00336 * 359.97438 * 10 9 7 29 29 H 0.97004 * 120.00379 * 359.97438 * 13 11 10 30 30 H 1.07997 * 120.42090 * 0.02562 * 17 16 14 31 31 H 1.07998 * 120.78847 * 180.02562 * 18 17 16 32 32 H 1.08002 * 120.41399 * 179.97438 * 19 18 17 33 33 H 1.07999 * 119.61418 * 179.70216 * 20 19 18 34 34 H 1.09002 * 115.54636 * 274.41243 * 22 14 13 35 35 H 1.09008 * 117.49772 * 0.02562 * 23 22 14 36 36 H 1.08997 * 117.49739 * 145.01686 * 23 22 14 37 37 H 1.09003 * 117.50048 * 214.97662 * 24 22 14 38 38 H 1.09000 * 117.49770 * 359.97438 * 24 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 7 3.9999 -2.5752 0.0010 11 6 5.3250 -2.8214 0.0020 12 8 6.1151 -1.8973 0.0025 13 7 5.7743 -4.0921 0.0013 14 6 7.2146 -4.3598 0.0018 15 1 7.7254 -3.5989 0.5920 16 6 7.4729 -5.7180 0.6016 17 6 8.1725 -5.8184 1.7895 18 6 8.4052 -7.0725 2.3325 19 6 7.9238 -8.1838 1.6570 20 6 7.2382 -8.0059 0.4705 21 7 7.0294 -6.7969 -0.0132 22 6 7.7397 -4.3284 -1.4349 23 6 8.9574 -3.4481 -1.7229 24 6 7.5725 -3.0258 -2.2198 25 1 -0.4850 0.8401 -0.0004 26 1 3.8746 -0.6799 0.8911 27 1 3.8752 -0.6803 -0.8888 28 1 3.3696 -3.3124 0.0010 29 1 5.1440 -4.8294 0.0006 30 1 8.5332 -4.9310 2.2884 31 1 8.9484 -7.1815 3.2595 32 1 8.0871 -9.1762 2.0507 33 1 6.8643 -8.8666 -0.0642 34 1 7.6528 -5.2639 -1.9877 35 1 9.3848 -2.8916 -0.8887 36 1 9.6715 -3.8042 -2.4655 37 1 7.3761 -3.1042 -3.2891 38 1 7.0881 -2.1914 -1.7128 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922228921.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:20 Heat of formation + Delta-G solvation = 32.407115 kcal Electronic energy + Delta-G solvation = -20667.924808 eV Core-core repulsion = 17511.315974 eV Total energy + Delta-G solvation = -3156.608834 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.68050 -39.35313 -37.11832 -34.26740 -34.02045 -32.65164 -32.32623 -31.49232 -28.11766 -26.46274 -23.84295 -22.71756 -22.18885 -22.03392 -20.49294 -19.95667 -18.40049 -17.14698 -16.54297 -16.32406 -16.06437 -15.79457 -14.97999 -14.81518 -14.43619 -14.03914 -13.81596 -13.61735 -13.25897 -13.12687 -12.74243 -12.35608 -12.21365 -11.86119 -11.70843 -11.21214 -10.93733 -10.72416 -10.23383 -10.18975 -10.02930 -9.93089 -9.72305 -9.51098 -9.41779 -9.23495 -8.74239 -8.68313 -7.97457 -6.17368 -4.19006 0.80975 1.03217 3.16090 3.30590 3.37370 3.45732 3.63046 3.78807 3.97161 4.18120 4.37268 4.42624 4.59764 4.81818 4.85622 5.00763 5.03978 5.12699 5.18311 5.25083 5.34695 5.44559 5.49559 5.69008 5.80031 5.91008 5.96646 6.16833 6.29937 6.43197 6.64105 6.78622 6.82220 7.15834 7.29530 7.45929 7.63334 7.76062 8.32575 8.73616 8.85947 9.24925 9.44377 10.94695 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.024036 B = 0.004046 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.660537 B = 6919.467792 C = 7533.430685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.077 3.923 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.542 4.542 8 H 0.079 0.921 9 C 0.239 3.761 10 N -0.721 5.721 11 C 0.699 3.301 12 O -0.601 6.601 13 N -0.741 5.741 14 C 0.250 3.750 15 H 0.100 0.900 16 C 0.128 3.872 17 C -0.155 4.155 18 C -0.075 4.075 19 C -0.175 4.175 20 C 0.099 3.901 21 N -0.470 5.470 22 C -0.164 4.164 23 C -0.177 4.177 24 C -0.176 4.176 25 H 0.267 0.733 26 H 0.023 0.977 27 H 0.019 0.981 28 H 0.392 0.608 29 H 0.396 0.604 30 H 0.137 0.863 31 H 0.135 0.865 32 H 0.134 0.866 33 H 0.156 0.844 34 H 0.107 0.893 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.894 -15.920 2.151 24.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.126 4.126 3 Si 0.704 3.296 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.580 4.580 8 H 0.097 0.903 9 C 0.117 3.883 10 N -0.373 5.373 11 C 0.400 3.600 12 O -0.482 6.482 13 N -0.396 5.396 14 C 0.144 3.856 15 H 0.117 0.883 16 C -0.011 4.011 17 C -0.176 4.176 18 C -0.101 4.101 19 C -0.195 4.195 20 C -0.058 4.058 21 N -0.179 5.179 22 C -0.183 4.183 23 C -0.214 4.214 24 C -0.213 4.213 25 H 0.077 0.923 26 H 0.041 0.959 27 H 0.037 0.963 28 H 0.226 0.774 29 H 0.230 0.770 30 H 0.155 0.845 31 H 0.153 0.847 32 H 0.152 0.848 33 H 0.174 0.826 34 H 0.125 0.875 35 H 0.111 0.889 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 17.936 -14.795 1.384 23.292 hybrid contribution 0.192 -0.131 0.754 0.789 sum 18.128 -14.926 2.138 23.579 Atomic orbital electron populations 1.69889 1.06223 1.27359 1.49678 1.24785 0.94777 0.99147 0.93934 0.86810 0.80591 0.83196 0.79044 1.19857 1.20999 1.18423 1.21111 0.88642 0.95178 1.53037 0.90330 1.19350 0.94769 0.77617 0.96610 1.45396 1.03711 1.11044 1.77151 1.16044 0.83542 0.82570 0.77882 1.90777 1.55162 1.43198 1.59062 1.45080 1.06335 1.06797 1.81420 1.19012 0.82000 0.90468 0.94137 0.88262 1.21251 0.94003 0.94178 0.91620 1.22022 1.00180 0.98909 0.96456 1.21596 0.96910 0.92265 0.99337 1.22173 1.00165 0.99923 0.97190 1.22789 0.94889 0.94754 0.93376 1.67458 1.18752 0.98501 1.33206 1.22608 1.02927 0.96268 0.96545 1.22923 0.91245 1.03716 1.03550 1.23353 0.99024 0.99234 0.99680 0.92318 0.95929 0.96318 0.77449 0.77010 0.84508 0.84704 0.84807 0.82635 0.87451 0.88880 0.89384 0.89672 0.85558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.80 13.96 55.43 0.77 -26.03 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 3 Si 0.88 21.64 27.47 -169.99 -4.67 16.98 16 4 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 7 C -0.54 -15.06 9.83 -34.44 -0.34 -15.40 16 8 H 0.08 2.28 7.84 -52.49 -0.41 1.87 16 9 C 0.24 5.98 4.50 -5.19 -0.02 5.95 16 10 N -0.72 -15.10 5.55 -66.42 -0.37 -15.47 16 11 C 0.70 13.77 7.90 -86.92 -0.69 13.08 16 12 O -0.60 -13.51 13.36 5.29 0.07 -13.44 16 13 N -0.74 -11.49 5.05 -59.81 -0.30 -11.79 16 14 C 0.25 3.46 2.59 -69.08 -0.18 3.28 16 15 H 0.10 1.46 7.06 -51.93 -0.37 1.09 16 16 C 0.13 1.52 5.62 -82.58 -0.46 1.06 16 17 C -0.16 -1.55 9.71 -39.44 -0.38 -1.93 16 18 C -0.07 -0.60 10.18 -39.27 -0.40 -1.00 16 19 C -0.17 -1.31 10.11 -39.44 -0.40 -1.71 16 20 C 0.10 0.90 11.18 -17.55 -0.20 0.70 16 21 N -0.47 -5.50 9.72 -9.47 -0.09 -5.59 16 22 C -0.16 -2.23 5.29 -90.62 -0.48 -2.71 16 23 C -0.18 -2.23 10.18 -26.69 -0.27 -2.50 16 24 C -0.18 -2.67 9.74 -26.69 -0.26 -2.92 16 25 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 26 H 0.02 0.60 7.20 -51.93 -0.37 0.22 16 27 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 28 H 0.39 7.40 8.33 -40.82 -0.34 7.06 16 29 H 0.40 5.59 8.59 -40.82 -0.35 5.24 16 30 H 0.14 1.18 7.95 -52.49 -0.42 0.77 16 31 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 32 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 33 H 0.16 1.00 8.06 -52.49 -0.42 0.58 16 34 H 0.11 1.46 7.73 -51.93 -0.40 1.06 16 35 H 0.09 1.15 8.05 -51.92 -0.42 0.73 16 36 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.13 2.35 5.01 -51.93 -0.26 2.09 16 LS Contribution 322.26 15.07 4.86 4.86 Total: -1.00 -32.50 322.26 -8.92 -41.42 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -5.01 Total: 11.07 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -4.18 Total: -2.00 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: 0.01 Total: -58.89 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: 0.07 Total: -13.44 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.98 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.50 -8.92 -41.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922228921.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.830 kcal (2) G-P(sol) polarization free energy of solvation -32.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds