Wall clock time and date at job start Mon Mar 30 2020 01:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86805 * 119.99741 * 2 1 4 4 H 1.48497 * 109.47185 * 269.99749 * 3 2 1 5 5 H 1.48496 * 109.47266 * 30.00054 * 3 2 1 6 6 H 1.48502 * 109.47012 * 149.99533 * 3 2 1 7 7 C 1.37878 * 120.00287 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99504 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99917 * 180.02562 * 7 2 1 10 10 N 1.46502 * 109.46388 * 180.02562 * 9 7 2 11 11 C 1.34783 * 119.99417 * 180.02562 * 10 9 7 12 12 O 1.21580 * 120.00116 * 359.97438 * 11 10 9 13 13 N 1.34772 * 119.99719 * 180.02562 * 11 10 9 14 14 C 1.46502 * 119.99948 * 179.97438 * 13 11 10 15 15 H 1.09000 * 109.46995 * 34.99738 * 14 13 11 16 16 C 1.50702 * 109.47103 * 154.99701 * 14 13 11 17 17 C 1.38225 * 119.61833 * 244.99911 * 16 14 13 18 18 C 1.38635 * 119.15939 * 180.02562 * 17 16 14 19 19 C 1.38675 * 118.41956 * 0.02562 * 18 17 16 20 20 C 1.38186 * 119.16332 * 0.27967 * 19 18 17 21 21 N 1.31860 * 119.61626 * 65.02589 * 16 14 13 22 22 C 1.53002 * 109.47114 * 275.00044 * 14 13 11 23 23 C 1.52996 * 117.49865 * 128.74703 * 22 14 13 24 24 C 1.52995 * 117.49793 * 60.08384 * 22 14 13 25 25 H 0.97004 * 119.99780 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.47217 * 60.00377 * 9 7 2 27 27 H 1.08990 * 109.47045 * 300.00085 * 9 7 2 28 28 H 0.96992 * 120.00336 * 359.97438 * 10 9 7 29 29 H 0.97004 * 120.00379 * 359.97438 * 13 11 10 30 30 H 1.07997 * 120.42090 * 0.02562 * 17 16 14 31 31 H 1.07998 * 120.78847 * 180.02562 * 18 17 16 32 32 H 1.08002 * 120.41399 * 179.97438 * 19 18 17 33 33 H 1.07999 * 119.61418 * 179.70216 * 20 19 18 34 34 H 1.09002 * 115.54636 * 274.41243 * 22 14 13 35 35 H 1.09008 * 117.49772 * 0.02562 * 23 22 14 36 36 H 1.08997 * 117.49739 * 145.01686 * 23 22 14 37 37 H 1.09003 * 117.50048 * 214.97662 * 24 22 14 38 38 H 1.09000 * 117.49770 * 359.97438 * 24 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 7 3.9999 -2.5752 0.0010 11 6 5.3250 -2.8214 0.0020 12 8 6.1151 -1.8973 0.0025 13 7 5.7743 -4.0921 0.0013 14 6 7.2146 -4.3598 0.0018 15 1 7.7254 -3.5989 0.5920 16 6 7.4729 -5.7180 0.6016 17 6 8.1725 -5.8184 1.7895 18 6 8.4052 -7.0725 2.3325 19 6 7.9238 -8.1838 1.6570 20 6 7.2382 -8.0059 0.4705 21 7 7.0294 -6.7969 -0.0132 22 6 7.7397 -4.3284 -1.4349 23 6 8.9574 -3.4481 -1.7229 24 6 7.5725 -3.0258 -2.2198 25 1 -0.4850 0.8401 -0.0004 26 1 3.8746 -0.6799 0.8911 27 1 3.8752 -0.6803 -0.8888 28 1 3.3696 -3.3124 0.0010 29 1 5.1440 -4.8294 0.0006 30 1 8.5332 -4.9310 2.2884 31 1 8.9484 -7.1815 3.2595 32 1 8.0871 -9.1762 2.0507 33 1 6.8643 -8.8666 -0.0642 34 1 7.6528 -5.2639 -1.9877 35 1 9.3848 -2.8916 -0.8887 36 1 9.6715 -3.8042 -2.4655 37 1 7.3761 -3.1042 -3.2891 38 1 7.0881 -2.1914 -1.7128 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922228921.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:19 Heat of formation + Delta-G solvation = 9.486039 kcal Electronic energy + Delta-G solvation = -20668.918740 eV Core-core repulsion = 17511.315974 eV Total energy + Delta-G solvation = -3157.602766 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.63317 -40.65176 -38.33219 -36.07573 -35.34579 -34.34476 -33.34866 -32.49454 -29.90889 -27.70930 -24.54540 -24.17815 -23.45433 -23.18042 -22.03963 -21.16650 -20.01666 -18.48477 -17.89245 -17.51984 -17.22929 -16.72816 -16.36853 -16.30505 -15.79014 -15.44616 -14.96964 -14.91689 -14.61245 -14.35460 -14.09147 -13.86217 -13.65113 -13.07304 -12.88640 -12.69232 -12.58723 -12.32779 -11.90463 -11.64747 -11.38820 -11.25267 -11.07268 -10.90070 -10.78481 -10.44502 -10.13147 -9.98316 -9.66465 -8.38539 -6.45420 0.08816 0.37531 1.35031 1.36415 1.50055 1.83546 2.21576 2.30179 2.84853 2.92651 2.97279 3.21931 3.52335 3.61319 3.94981 4.08608 4.14094 4.15225 4.22682 4.24401 4.29942 4.67212 4.68749 4.78191 4.78738 4.85057 5.01679 5.08288 5.22710 5.25028 5.26759 5.28681 5.36511 5.53414 5.61050 5.78531 5.97679 6.28594 6.56611 7.03280 7.14748 7.25590 7.68418 8.76405 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.024036 B = 0.004046 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.660537 B = 6919.467792 C = 7533.430685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.026 3.974 3 Si 0.939 3.061 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.259 1.259 7 C -0.547 4.547 8 H 0.056 0.944 9 C 0.254 3.746 10 N -0.724 5.724 11 C 0.701 3.299 12 O -0.628 6.628 13 N -0.724 5.724 14 C 0.250 3.750 15 H 0.087 0.913 16 C 0.106 3.894 17 C -0.165 4.165 18 C -0.075 4.075 19 C -0.163 4.163 20 C 0.087 3.913 21 N -0.495 5.495 22 C -0.158 4.158 23 C -0.155 4.155 24 C -0.198 4.198 25 H 0.272 0.728 26 H 0.012 0.988 27 H 0.010 0.990 28 H 0.402 0.598 29 H 0.404 0.596 30 H 0.143 0.857 31 H 0.165 0.835 32 H 0.168 0.832 33 H 0.179 0.821 34 H 0.110 0.890 35 H 0.094 0.906 36 H 0.112 0.888 37 H 0.091 0.909 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.894 -17.466 2.781 26.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.174 4.174 3 Si 0.763 3.237 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.183 1.183 7 C -0.585 4.585 8 H 0.074 0.926 9 C 0.130 3.870 10 N -0.377 5.377 11 C 0.401 3.599 12 O -0.511 6.511 13 N -0.379 5.379 14 C 0.144 3.856 15 H 0.105 0.895 16 C -0.031 4.031 17 C -0.185 4.185 18 C -0.100 4.100 19 C -0.182 4.182 20 C -0.071 4.071 21 N -0.204 5.204 22 C -0.178 4.178 23 C -0.193 4.193 24 C -0.235 4.235 25 H 0.082 0.918 26 H 0.030 0.970 27 H 0.028 0.972 28 H 0.236 0.764 29 H 0.239 0.761 30 H 0.161 0.839 31 H 0.182 0.818 32 H 0.185 0.815 33 H 0.196 0.804 34 H 0.128 0.872 35 H 0.113 0.887 36 H 0.130 0.870 37 H 0.109 0.891 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 19.953 -16.394 2.014 25.902 hybrid contribution -0.410 0.176 0.583 0.734 sum 19.543 -16.219 2.597 25.529 Atomic orbital electron populations 1.69990 1.07735 1.28615 1.50809 1.25598 0.95545 1.02705 0.93530 0.85828 0.79290 0.79119 0.79476 1.19000 1.19783 1.18281 1.21293 0.90046 0.94510 1.52606 0.92583 1.18931 0.92872 0.79637 0.95560 1.45145 1.04659 1.09901 1.77960 1.16078 0.82676 0.83579 0.77571 1.90764 1.55653 1.44509 1.60148 1.44969 1.07648 1.05362 1.79896 1.19076 0.80255 0.91887 0.94354 0.89468 1.20923 0.96203 0.93188 0.92829 1.22183 1.00056 1.00362 0.95916 1.21986 0.96450 0.91410 1.00192 1.22571 0.98163 1.01392 0.96097 1.23277 0.95062 0.94411 0.94307 1.67369 1.19621 0.99337 1.34117 1.22581 1.03526 0.95577 0.96126 1.23001 0.90516 1.02171 1.03587 1.23197 1.01404 0.99086 0.99856 0.91848 0.96999 0.97197 0.76373 0.76066 0.83927 0.81765 0.81463 0.80414 0.87159 0.88741 0.87018 0.89095 0.88987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.56 13.96 21.45 0.30 -56.26 16 2 C 0.03 1.52 5.47 84.65 0.46 1.98 16 3 Si 0.94 44.77 27.47 68.60 1.88 46.66 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.26 -12.20 6.54 99.48 0.65 -11.55 16 7 C -0.55 -30.97 9.83 25.60 0.25 -30.72 16 8 H 0.06 3.35 7.84 -2.91 -0.02 3.33 16 9 C 0.25 12.87 4.50 85.63 0.38 13.26 16 10 N -0.72 -30.82 5.55 -482.31 -2.68 -33.49 16 11 C 0.70 28.01 7.90 179.05 1.41 29.43 16 12 O -0.63 -28.81 13.36 -3.97 -0.05 -28.86 16 13 N -0.72 -22.58 5.05 -461.41 -2.33 -24.91 16 14 C 0.25 6.86 2.59 44.25 0.11 6.98 16 15 H 0.09 2.59 7.06 -2.39 -0.02 2.57 16 16 C 0.11 2.41 5.62 42.55 0.24 2.65 16 17 C -0.16 -3.00 9.71 22.36 0.22 -2.78 16 18 C -0.07 -0.95 10.18 22.47 0.23 -0.72 16 19 C -0.16 -1.85 10.11 22.36 0.23 -1.63 16 20 C 0.09 1.34 11.18 84.67 0.95 2.29 16 21 N -0.49 -10.85 9.72 -183.88 -1.79 -12.64 16 22 C -0.16 -4.24 5.29 -10.80 -0.06 -4.30 16 23 C -0.16 -3.75 10.18 30.62 0.31 -3.43 16 24 C -0.20 -6.05 9.74 30.62 0.30 -5.75 16 25 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 26 H 0.01 0.64 7.20 -2.39 -0.02 0.62 16 27 H 0.01 0.53 7.57 -2.39 -0.02 0.51 16 28 H 0.40 15.42 8.33 -92.71 -0.77 14.65 16 29 H 0.40 11.37 8.59 -92.71 -0.80 10.57 16 30 H 0.14 2.30 7.95 -2.91 -0.02 2.27 16 31 H 0.16 1.08 8.06 -2.91 -0.02 1.05 16 32 H 0.17 0.77 8.06 -2.91 -0.02 0.74 16 33 H 0.18 1.77 8.06 -2.91 -0.02 1.74 16 34 H 0.11 2.90 7.73 -2.39 -0.02 2.89 16 35 H 0.09 2.25 8.05 -2.38 -0.02 2.23 16 36 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 38 H 0.09 3.54 5.01 -2.39 -0.01 3.53 16 Total: -1.00 -70.87 322.26 -0.16 -71.03 By element: Atomic # 1 Polarization: 31.76 SS G_CDS: -0.53 Total: 31.23 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: 5.04 Total: 7.25 kcal Atomic # 7 Polarization: -120.81 SS G_CDS: -6.50 Total: -127.30 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -0.05 Total: -28.86 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.88 Total: 46.66 kcal Total: -70.87 -0.16 -71.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922228921.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.518 kcal (2) G-P(sol) polarization free energy of solvation -70.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds