Wall clock time and date at job start Mon Mar 30 2020 01:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00055 * 2 1 4 4 H 1.48496 * 109.46917 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46891 * 299.99566 * 3 2 1 6 6 H 1.48497 * 109.47283 * 59.99847 * 3 2 1 7 7 C 1.37881 * 119.99770 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99495 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00199 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.46767 * 179.97438 * 9 7 2 11 11 C 1.34776 * 119.99586 * 179.97438 * 10 9 7 12 12 O 1.21581 * 120.00345 * 0.02562 * 11 10 9 13 13 N 1.34786 * 119.99969 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99950 * 179.97438 * 13 11 10 15 15 H 1.09000 * 109.47092 * 345.39131 * 14 13 11 16 16 C 1.50699 * 109.47182 * 225.38230 * 14 13 11 17 17 C 1.38230 * 119.61172 * 116.33471 * 16 14 13 18 18 C 1.38633 * 119.15800 * 180.02562 * 17 16 14 19 19 C 1.38676 * 118.41975 * 0.02562 * 18 17 16 20 20 C 1.38189 * 119.16184 * 359.97438 * 19 18 17 21 21 N 1.31851 * 119.62205 * 296.35791 * 16 14 13 22 22 C 1.53004 * 109.46577 * 105.38515 * 14 13 11 23 23 C 1.52998 * 117.50237 * 8.74751 * 22 14 13 24 24 C 1.53001 * 117.50264 * 300.08501 * 22 14 13 25 25 H 0.96997 * 120.00241 * 359.97438 * 1 2 3 26 26 H 1.08990 * 109.46848 * 59.99858 * 9 7 2 27 27 H 1.08994 * 109.46848 * 299.99415 * 9 7 2 28 28 H 0.96998 * 120.00556 * 0.02562 * 10 9 7 29 29 H 0.96994 * 119.99468 * 0.02562 * 13 11 10 30 30 H 1.07994 * 120.42689 * 359.97438 * 17 16 14 31 31 H 1.07994 * 120.78990 * 180.02562 * 18 17 16 32 32 H 1.07996 * 120.41944 * 179.97438 * 19 18 17 33 33 H 1.08007 * 119.61226 * 180.02562 * 20 19 18 34 34 H 1.09006 * 115.54849 * 154.41723 * 22 14 13 35 35 H 1.08994 * 117.49814 * 359.97438 * 23 22 14 36 36 H 1.08999 * 117.49868 * 145.01583 * 23 22 14 37 37 H 1.08996 * 117.50106 * 214.98758 * 24 22 14 38 38 H 1.09003 * 117.49443 * 359.97438 * 24 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7537 -4.8833 0.0011 12 8 0.5584 -5.1056 0.0011 13 7 2.6296 -5.9078 0.0016 14 6 2.1412 -7.2890 0.0027 15 1 1.0826 -7.2999 0.2622 16 6 2.9149 -8.0946 1.0144 17 6 2.2577 -8.6359 2.1034 18 6 2.9787 -9.3748 3.0286 19 6 4.3399 -9.5419 2.8233 20 6 4.9282 -8.9709 1.7109 21 7 4.2108 -8.2744 0.8510 22 6 2.3317 -7.8983 -1.3878 23 6 3.1406 -7.0935 -2.4070 24 6 1.6227 -7.2180 -2.5605 25 1 -0.4850 0.8400 0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6241 -2.5568 0.8903 28 1 3.1567 -3.4355 0.0009 29 1 3.5832 -5.7305 0.0020 30 1 1.1962 -8.4845 2.2323 31 1 2.4918 -9.8100 3.8887 32 1 4.9328 -10.1112 3.5238 33 1 5.9878 -9.0968 1.5436 34 1 2.4237 -8.9841 -1.4167 35 1 3.5367 -6.1298 -2.0872 36 1 3.7644 -7.6498 -3.1067 37 1 1.2484 -7.8561 -3.3610 38 1 1.0201 -6.3365 -2.3413 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922228922.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:23 Heat of formation + Delta-G solvation = 29.526965 kcal Electronic energy + Delta-G solvation = -20677.703097 eV Core-core repulsion = 17520.969371 eV Total energy + Delta-G solvation = -3156.733727 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.60293 -39.25404 -37.18320 -34.15590 -33.65387 -32.55304 -32.33044 -31.39307 -27.70013 -26.32141 -23.72174 -22.74051 -22.59079 -22.08177 -20.42921 -19.68607 -18.18241 -17.20192 -16.47833 -16.10456 -15.94841 -15.65351 -14.96866 -14.75754 -14.33463 -14.02704 -13.73146 -13.50725 -13.26809 -12.96818 -12.71840 -11.97275 -11.94274 -11.83201 -11.55943 -11.26744 -10.90205 -10.89005 -10.29073 -10.26695 -10.02325 -9.90855 -9.62690 -9.39281 -9.32589 -9.12992 -8.75082 -8.66627 -7.74295 -6.13085 -4.19201 0.91097 1.12640 3.25923 3.28160 3.33814 3.37794 3.72621 3.88878 4.04929 4.17735 4.35788 4.53732 4.67439 4.90919 4.93243 5.06554 5.13132 5.16558 5.19644 5.23261 5.42459 5.51461 5.62152 5.73773 5.87589 5.99145 6.02427 6.08564 6.31247 6.43889 6.52621 6.90024 7.15983 7.54438 7.58858 7.60047 7.85894 7.94485 8.07885 8.79611 8.97131 9.35648 9.50709 10.97227 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.022036 B = 0.003932 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.330384 B = 7119.906653 C = 7612.282496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.540 4.540 8 H 0.063 0.937 9 C 0.267 3.733 10 N -0.728 5.728 11 C 0.694 3.306 12 O -0.600 6.600 13 N -0.742 5.742 14 C 0.243 3.757 15 H 0.115 0.885 16 C 0.126 3.874 17 C -0.156 4.156 18 C -0.076 4.076 19 C -0.177 4.177 20 C 0.097 3.903 21 N -0.467 5.467 22 C -0.158 4.158 23 C -0.162 4.162 24 C -0.174 4.174 25 H 0.265 0.735 26 H 0.025 0.975 27 H 0.024 0.976 28 H 0.386 0.614 29 H 0.396 0.604 30 H 0.138 0.862 31 H 0.134 0.866 32 H 0.132 0.868 33 H 0.155 0.845 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.144 -19.806 2.544 21.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.579 4.579 8 H 0.081 0.919 9 C 0.146 3.854 10 N -0.380 5.380 11 C 0.394 3.606 12 O -0.480 6.480 13 N -0.399 5.399 14 C 0.135 3.865 15 H 0.133 0.867 16 C -0.012 4.012 17 C -0.177 4.177 18 C -0.102 4.102 19 C -0.197 4.197 20 C -0.061 4.061 21 N -0.176 5.176 22 C -0.177 4.177 23 C -0.199 4.199 24 C -0.211 4.211 25 H 0.074 0.926 26 H 0.043 0.957 27 H 0.042 0.958 28 H 0.218 0.782 29 H 0.231 0.769 30 H 0.155 0.845 31 H 0.152 0.848 32 H 0.150 0.850 33 H 0.172 0.828 34 H 0.121 0.879 35 H 0.115 0.885 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 8.238 -19.432 1.814 21.184 hybrid contribution 0.980 0.602 0.868 1.441 sum 9.218 -18.829 2.682 21.135 Atomic orbital electron populations 1.69987 1.06074 1.27112 1.49147 1.24938 0.94899 0.99371 0.94799 0.86369 0.79836 0.83032 0.77709 1.19672 1.20814 1.20842 1.21273 0.93309 0.90451 1.52861 0.91925 1.18977 0.87753 0.81058 0.97585 1.45719 1.10815 1.04368 1.77070 1.16154 0.85206 0.81084 0.78134 1.90858 1.14109 1.84068 1.58943 1.45147 1.09204 1.04035 1.81489 1.19029 0.97893 0.79267 0.90270 0.86729 1.21469 0.90403 0.95147 0.94224 1.22066 1.01940 0.98727 0.94946 1.21589 0.94206 0.96045 0.98381 1.22150 0.95812 1.02033 0.99683 1.22773 1.00023 0.93011 0.90257 1.67476 1.06947 1.14146 1.29072 1.22531 1.06744 0.98040 0.90435 1.22830 0.93927 1.01916 1.01247 1.22998 0.95461 1.03384 0.99276 0.92553 0.95695 0.95779 0.78163 0.76934 0.84457 0.84814 0.84970 0.82819 0.87904 0.88501 0.89485 0.89241 0.87987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.54 -14.86 9.28 -34.44 -0.32 -15.18 16 8 H 0.06 1.62 7.60 -52.48 -0.40 1.22 16 9 C 0.27 7.21 5.43 -5.19 -0.03 7.18 16 10 N -0.73 -15.81 5.55 -66.42 -0.37 -16.18 16 11 C 0.69 14.34 8.36 -86.91 -0.73 13.61 16 12 O -0.60 -14.64 15.59 5.29 0.08 -14.56 16 13 N -0.74 -11.75 3.38 -59.81 -0.20 -11.95 16 14 C 0.24 3.45 2.93 -69.08 -0.20 3.24 16 15 H 0.11 1.81 6.76 -51.93 -0.35 1.46 16 16 C 0.13 1.60 5.70 -82.59 -0.47 1.12 16 17 C -0.16 -1.73 9.71 -39.44 -0.38 -2.12 16 18 C -0.08 -0.68 10.18 -39.27 -0.40 -1.08 16 19 C -0.18 -1.47 10.11 -39.44 -0.40 -1.87 16 20 C 0.10 0.93 11.18 -17.55 -0.20 0.74 16 21 N -0.47 -5.67 10.05 -9.47 -0.10 -5.76 16 22 C -0.16 -2.04 5.52 -90.62 -0.50 -2.54 16 23 C -0.16 -2.09 9.85 -26.69 -0.26 -2.35 16 24 C -0.17 -2.42 10.17 -26.69 -0.27 -2.69 16 25 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 26 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.39 7.33 8.34 -40.82 -0.34 6.99 16 29 H 0.40 5.67 8.39 -40.82 -0.34 5.33 16 30 H 0.14 1.39 7.95 -52.49 -0.42 0.97 16 31 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 32 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 33 H 0.15 1.07 8.06 -52.48 -0.42 0.65 16 34 H 0.10 1.22 8.11 -51.93 -0.42 0.80 16 35 H 0.10 1.35 6.69 -51.93 -0.35 1.00 16 36 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.10 1.75 7.79 -51.93 -0.40 1.35 16 LS Contribution 329.25 15.07 4.96 4.96 Total: -1.00 -32.66 329.25 -9.28 -41.94 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -5.12 Total: 11.33 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: -4.26 Total: -0.25 kcal Atomic # 7 Polarization: -59.53 SS G_CDS: 0.07 Total: -59.46 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: 0.08 Total: -14.56 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.66 -9.28 -41.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922228922.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.464 kcal (2) G-P(sol) polarization free energy of solvation -32.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds