Wall clock time and date at job start Mon Mar 30 2020 01:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00055 * 2 1 4 4 H 1.48496 * 109.46917 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46891 * 299.99566 * 3 2 1 6 6 H 1.48497 * 109.47283 * 59.99847 * 3 2 1 7 7 C 1.37881 * 119.99770 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99495 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00199 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.46767 * 179.97438 * 9 7 2 11 11 C 1.34776 * 119.99586 * 179.97438 * 10 9 7 12 12 O 1.21581 * 120.00345 * 0.02562 * 11 10 9 13 13 N 1.34786 * 119.99969 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99950 * 179.97438 * 13 11 10 15 15 H 1.09000 * 109.47092 * 345.39131 * 14 13 11 16 16 C 1.50699 * 109.47182 * 225.38230 * 14 13 11 17 17 C 1.38230 * 119.61172 * 116.33471 * 16 14 13 18 18 C 1.38633 * 119.15800 * 180.02562 * 17 16 14 19 19 C 1.38676 * 118.41975 * 0.02562 * 18 17 16 20 20 C 1.38189 * 119.16184 * 359.97438 * 19 18 17 21 21 N 1.31851 * 119.62205 * 296.35791 * 16 14 13 22 22 C 1.53004 * 109.46577 * 105.38515 * 14 13 11 23 23 C 1.52998 * 117.50237 * 8.74751 * 22 14 13 24 24 C 1.53001 * 117.50264 * 300.08501 * 22 14 13 25 25 H 0.96997 * 120.00241 * 359.97438 * 1 2 3 26 26 H 1.08990 * 109.46848 * 59.99858 * 9 7 2 27 27 H 1.08994 * 109.46848 * 299.99415 * 9 7 2 28 28 H 0.96998 * 120.00556 * 0.02562 * 10 9 7 29 29 H 0.96994 * 119.99468 * 0.02562 * 13 11 10 30 30 H 1.07994 * 120.42689 * 359.97438 * 17 16 14 31 31 H 1.07994 * 120.78990 * 180.02562 * 18 17 16 32 32 H 1.07996 * 120.41944 * 179.97438 * 19 18 17 33 33 H 1.08007 * 119.61226 * 180.02562 * 20 19 18 34 34 H 1.09006 * 115.54849 * 154.41723 * 22 14 13 35 35 H 1.08994 * 117.49814 * 359.97438 * 23 22 14 36 36 H 1.08999 * 117.49868 * 145.01583 * 23 22 14 37 37 H 1.08996 * 117.50106 * 214.98758 * 24 22 14 38 38 H 1.09003 * 117.49443 * 359.97438 * 24 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7537 -4.8833 0.0011 12 8 0.5584 -5.1056 0.0011 13 7 2.6296 -5.9078 0.0016 14 6 2.1412 -7.2890 0.0027 15 1 1.0826 -7.2999 0.2622 16 6 2.9149 -8.0946 1.0144 17 6 2.2577 -8.6359 2.1034 18 6 2.9787 -9.3748 3.0286 19 6 4.3399 -9.5419 2.8233 20 6 4.9282 -8.9709 1.7109 21 7 4.2108 -8.2744 0.8510 22 6 2.3317 -7.8983 -1.3878 23 6 3.1406 -7.0935 -2.4070 24 6 1.6227 -7.2180 -2.5605 25 1 -0.4850 0.8400 0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6241 -2.5568 0.8903 28 1 3.1567 -3.4355 0.0009 29 1 3.5832 -5.7305 0.0020 30 1 1.1962 -8.4845 2.2323 31 1 2.4918 -9.8100 3.8887 32 1 4.9328 -10.1112 3.5238 33 1 5.9878 -9.0968 1.5436 34 1 2.4237 -8.9841 -1.4167 35 1 3.5367 -6.1298 -2.0872 36 1 3.7644 -7.6498 -3.1067 37 1 1.2484 -7.8561 -3.3610 38 1 1.0201 -6.3365 -2.3413 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922228922.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:22 Heat of formation + Delta-G solvation = 7.356726 kcal Electronic energy + Delta-G solvation = -20678.664471 eV Core-core repulsion = 17520.969371 eV Total energy + Delta-G solvation = -3157.695100 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.64968 -40.62485 -38.46473 -36.11447 -35.01657 -34.30308 -33.32120 -32.50210 -29.42358 -27.77329 -24.72453 -24.44799 -23.55806 -23.18738 -22.03666 -20.97082 -19.89323 -18.32320 -17.90243 -17.40043 -17.25369 -16.75691 -16.49479 -16.08728 -15.79559 -15.62666 -15.00752 -14.61448 -14.44956 -14.07721 -14.00127 -13.88161 -13.82187 -12.92787 -12.78151 -12.71634 -12.64731 -12.36410 -12.21820 -11.45666 -11.43515 -11.21361 -10.92046 -10.81075 -10.76749 -10.54277 -10.16170 -9.97027 -9.62404 -8.28171 -6.44342 0.11233 0.38583 1.43423 1.44930 1.58127 1.86484 2.22521 2.39492 2.85972 2.93250 3.06864 3.23269 3.53513 3.65503 3.93860 4.06686 4.10268 4.15193 4.24514 4.26293 4.43602 4.56832 4.72729 4.79927 4.85357 4.99936 5.08448 5.18548 5.24033 5.27963 5.29065 5.29353 5.49425 5.53956 5.67052 5.79834 5.85630 6.23356 6.67278 7.05541 7.24000 7.28426 7.70684 8.84405 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.022036 B = 0.003932 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.330384 B = 7119.906653 C = 7612.282496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.986 3.014 4 H -0.255 1.255 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.554 4.554 8 H 0.081 0.919 9 C 0.287 3.713 10 N -0.724 5.724 11 C 0.696 3.304 12 O -0.641 6.641 13 N -0.719 5.719 14 C 0.241 3.759 15 H 0.091 0.909 16 C 0.106 3.894 17 C -0.172 4.172 18 C -0.077 4.077 19 C -0.165 4.165 20 C 0.087 3.913 21 N -0.486 5.486 22 C -0.148 4.148 23 C -0.153 4.153 24 C -0.187 4.187 25 H 0.269 0.731 26 H -0.014 1.014 27 H -0.014 1.014 28 H 0.402 0.598 29 H 0.407 0.593 30 H 0.135 0.865 31 H 0.161 0.839 32 H 0.168 0.832 33 H 0.182 0.818 34 H 0.121 0.879 35 H 0.084 0.916 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.256 -20.896 3.282 24.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.809 3.191 4 H -0.178 1.178 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.592 4.592 8 H 0.099 0.901 9 C 0.164 3.836 10 N -0.377 5.377 11 C 0.396 3.604 12 O -0.524 6.524 13 N -0.375 5.375 14 C 0.134 3.866 15 H 0.109 0.891 16 C -0.032 4.032 17 C -0.193 4.193 18 C -0.102 4.102 19 C -0.184 4.184 20 C -0.070 4.070 21 N -0.195 5.195 22 C -0.167 4.167 23 C -0.190 4.190 24 C -0.224 4.224 25 H 0.078 0.922 26 H 0.004 0.996 27 H 0.004 0.996 28 H 0.237 0.763 29 H 0.244 0.756 30 H 0.153 0.847 31 H 0.179 0.821 32 H 0.185 0.815 33 H 0.199 0.801 34 H 0.139 0.861 35 H 0.103 0.897 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.411 -20.577 2.551 23.668 hybrid contribution 0.023 0.796 0.691 1.055 sum 11.435 -19.781 3.242 23.077 Atomic orbital electron populations 1.70144 1.08224 1.28493 1.49997 1.26043 0.95778 1.03782 0.93855 0.85101 0.78994 0.77317 0.77725 1.17815 1.20373 1.20368 1.21622 0.94233 0.90537 1.52844 0.90051 1.18402 0.88006 0.83209 0.93973 1.45322 1.10818 1.03869 1.77667 1.16229 0.85097 0.81448 0.77616 1.90829 1.16273 1.84680 1.60585 1.44923 1.08961 1.03839 1.79813 1.19076 0.97120 0.78312 0.92053 0.89080 1.21099 0.90984 0.96549 0.94587 1.22192 1.02255 0.99533 0.95279 1.21955 0.94704 0.95119 0.98463 1.22561 0.95664 1.00771 0.99409 1.23323 1.01155 0.92344 0.90206 1.67402 1.06584 1.15194 1.30328 1.22515 1.06123 0.98816 0.89270 1.22873 0.93242 1.01569 1.01315 1.22924 0.95953 1.02647 1.00846 0.92228 0.99559 0.99618 0.76297 0.75645 0.84672 0.82099 0.81477 0.80136 0.86070 0.89717 0.87081 0.87154 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.79 13.29 21.45 0.28 -56.51 16 2 C 0.01 0.28 5.46 84.66 0.46 0.74 16 3 Si 0.99 42.98 29.54 68.60 2.03 45.01 16 4 H -0.25 -10.31 7.11 99.48 0.71 -9.60 16 5 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 6 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 7 C -0.55 -30.89 9.28 25.60 0.24 -30.65 16 8 H 0.08 4.13 7.60 -2.91 -0.02 4.11 16 9 C 0.29 16.31 5.43 85.63 0.46 16.78 16 10 N -0.72 -32.59 5.55 -482.32 -2.68 -35.27 16 11 C 0.70 30.17 8.36 179.05 1.50 31.66 16 12 O -0.64 -33.43 15.59 -3.97 -0.06 -33.49 16 13 N -0.72 -23.35 3.38 -461.41 -1.56 -24.90 16 14 C 0.24 7.00 2.93 44.25 0.13 7.13 16 15 H 0.09 3.08 6.76 -2.39 -0.02 3.07 16 16 C 0.11 2.60 5.70 42.55 0.24 2.85 16 17 C -0.17 -3.69 9.71 22.36 0.22 -3.47 16 18 C -0.08 -1.17 10.18 22.47 0.23 -0.94 16 19 C -0.16 -2.13 10.11 22.36 0.23 -1.90 16 20 C 0.09 1.41 11.18 84.67 0.95 2.36 16 21 N -0.49 -10.90 10.05 -183.88 -1.85 -12.75 16 22 C -0.15 -3.78 5.52 -10.79 -0.06 -3.84 16 23 C -0.15 -3.82 9.85 30.62 0.30 -3.52 16 24 C -0.19 -5.28 10.17 30.62 0.31 -4.97 16 25 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 26 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 27 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 28 H 0.40 15.35 8.34 -92.71 -0.77 14.58 16 29 H 0.41 11.58 8.39 -92.71 -0.78 10.80 16 30 H 0.14 2.81 7.95 -2.91 -0.02 2.79 16 31 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 32 H 0.17 0.99 8.06 -2.91 -0.02 0.97 16 33 H 0.18 1.81 8.06 -2.91 -0.02 1.79 16 34 H 0.12 2.70 8.11 -2.38 -0.02 2.68 16 35 H 0.08 2.32 6.69 -2.39 -0.02 2.31 16 36 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 38 H 0.06 2.28 7.79 -2.39 -0.02 2.26 16 Total: -1.00 -74.19 329.25 0.91 -73.28 By element: Atomic # 1 Polarization: 32.87 SS G_CDS: -0.46 Total: 32.41 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: 5.21 Total: 12.23 kcal Atomic # 7 Polarization: -123.63 SS G_CDS: -5.80 Total: -129.43 kcal Atomic # 8 Polarization: -33.43 SS G_CDS: -0.06 Total: -33.49 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -74.19 0.91 -73.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922228922.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.637 kcal (2) G-P(sol) polarization free energy of solvation -74.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds