Wall clock time and date at job start Mon Mar 30 2020 01:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00125 * 2 1 4 4 H 1.48503 * 109.46845 * 269.99927 * 3 2 1 5 5 H 1.48503 * 109.47399 * 29.99417 * 3 2 1 6 6 H 1.48498 * 109.47295 * 150.00023 * 3 2 1 7 7 C 1.37877 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00146 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99842 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.47011 * 179.97438 * 9 7 2 11 11 C 1.34780 * 119.99588 * 179.97438 * 10 9 7 12 12 O 1.21579 * 120.00272 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99440 * 180.02562 * 11 10 9 14 14 C 1.46497 * 119.99563 * 180.02562 * 13 11 10 15 15 H 1.08998 * 109.25951 * 324.47879 * 14 13 11 16 16 C 1.52732 * 109.25820 * 204.99671 * 14 13 11 17 17 C 1.53326 * 108.42423 * 188.42508 * 16 14 13 18 18 C 1.52763 * 108.35588 * 69.89307 * 17 16 14 19 19 C 1.50494 * 110.56540 * 309.21310 * 18 17 16 20 20 C 1.39188 * 117.97323 * 197.28657 * 19 18 17 21 21 C 1.38401 * 118.86578 * 180.25778 * 20 19 18 22 22 C 1.38243 * 118.84977 * 359.97438 * 21 20 19 23 23 N 1.31510 * 120.60382 * 359.91996 * 22 21 20 24 24 C 1.32699 * 122.40243 * 359.97438 * 23 22 21 25 25 H 0.97000 * 119.99838 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.47053 * 299.99554 * 9 7 2 27 27 H 1.08991 * 109.47398 * 59.99511 * 9 7 2 28 28 H 0.97000 * 120.00105 * 359.97438 * 10 9 7 29 29 H 0.97000 * 120.00253 * 359.97438 * 13 11 10 30 30 H 1.08994 * 109.67031 * 308.16071 * 16 14 13 31 31 H 1.09000 * 109.66951 * 68.69089 * 16 14 13 32 32 H 1.08998 * 109.68128 * 189.60813 * 17 16 14 33 33 H 1.08998 * 109.68948 * 310.17582 * 17 16 14 34 34 H 1.09005 * 109.25609 * 69.49440 * 18 17 16 35 35 H 1.09001 * 109.25684 * 188.93181 * 18 17 16 36 36 H 1.08000 * 120.56717 * 0.21038 * 20 19 18 37 37 H 1.08000 * 120.57809 * 179.97438 * 21 20 19 38 38 H 1.07999 * 119.70002 * 179.89707 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 1.7537 -4.8833 0.0011 12 8 0.5584 -5.1055 0.0011 13 7 2.6296 -5.9078 0.0016 14 6 2.1412 -7.2889 0.0016 15 1 1.2315 -7.3486 0.5990 16 6 3.2051 -8.1994 0.6114 17 6 2.7693 -9.6557 0.4111 18 6 2.8755 -9.9894 -1.0759 19 6 2.1690 -8.9493 -1.9029 20 6 1.8471 -9.2695 -3.2186 21 6 1.2020 -8.3246 -3.9975 22 6 0.8992 -7.0958 -3.4413 23 7 1.2170 -6.8291 -2.1934 24 6 1.8336 -7.7078 -1.4133 25 1 -0.4850 -0.8401 -0.0004 26 1 0.6241 -2.5567 0.8904 27 1 0.6247 -2.5570 -0.8895 28 1 3.1568 -3.4354 0.0002 29 1 3.5833 -5.7305 0.0012 30 1 4.1607 -8.0307 0.1152 31 1 3.3018 -7.9885 1.6765 32 1 3.4211 -10.3160 0.9831 33 1 1.7383 -9.7794 0.7424 34 1 3.9266 -10.0235 -1.3625 35 1 2.4218 -10.9634 -1.2590 36 1 2.0971 -10.2383 -3.6251 37 1 0.9396 -8.5436 -5.0220 38 1 0.3974 -6.3477 -4.0372 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922229561.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:27 Heat of formation + Delta-G solvation = -9.335265 kcal Electronic energy + Delta-G solvation = -20946.359318 eV Core-core repulsion = 17787.940398 eV Total energy + Delta-G solvation = -3158.418919 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.79083 -38.88981 -36.82120 -34.57582 -33.89950 -32.45371 -31.78741 -30.55967 -28.85052 -26.31131 -24.23775 -23.41023 -22.82503 -22.00239 -20.19931 -19.91832 -17.98422 -17.05532 -16.55966 -16.32091 -16.02042 -15.27372 -14.52251 -14.36326 -14.05900 -13.83760 -13.69653 -13.63309 -13.08194 -13.02833 -12.89936 -12.56443 -12.07331 -12.02356 -11.79553 -11.49249 -11.06275 -10.88325 -10.83379 -10.69744 -10.12438 -9.67767 -9.32401 -9.22238 -8.79354 -8.68524 -8.61812 -8.54543 -7.72008 -6.42373 -4.14260 1.09463 1.30770 3.37029 3.43032 3.46239 3.61825 3.88536 4.05631 4.25427 4.50701 4.52331 4.59414 4.68116 4.80441 4.88809 4.98300 5.08348 5.22317 5.31069 5.34785 5.36755 5.53483 5.54349 5.61754 5.71462 5.78611 5.89471 6.04525 6.13461 6.19431 6.71224 6.94444 7.04712 7.41400 7.53602 7.64267 8.00911 8.21790 8.40983 8.74824 9.01562 9.50517 9.63381 10.98118 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.028521 B = 0.003949 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.499567 B = 7087.873047 C = 7648.178237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.021 3.979 3 Si 1.079 2.921 4 H -0.287 1.287 5 H -0.283 1.283 6 H -0.288 1.288 7 C -0.620 4.620 8 H 0.055 0.945 9 C 0.261 3.739 10 N -0.729 5.729 11 C 0.703 3.297 12 O -0.586 6.586 13 N -0.745 5.745 14 C 0.219 3.781 15 H 0.101 0.899 16 C -0.125 4.125 17 C -0.117 4.117 18 C -0.075 4.075 19 C -0.131 4.131 20 C -0.086 4.086 21 C -0.177 4.177 22 C 0.100 3.900 23 N -0.445 5.445 24 C 0.120 3.880 25 H 0.273 0.727 26 H 0.012 0.988 27 H 0.013 0.987 28 H 0.385 0.615 29 H 0.389 0.611 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.010 -22.051 -3.496 24.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.184 4.184 3 Si 0.906 3.094 4 H -0.214 1.214 5 H -0.208 1.208 6 H -0.215 1.215 7 C -0.658 4.658 8 H 0.074 0.926 9 C 0.139 3.861 10 N -0.381 5.381 11 C 0.403 3.597 12 O -0.463 6.463 13 N -0.401 5.401 14 C 0.112 3.888 15 H 0.119 0.881 16 C -0.163 4.163 17 C -0.155 4.155 18 C -0.113 4.113 19 C -0.133 4.133 20 C -0.112 4.112 21 C -0.197 4.197 22 C -0.059 4.059 23 N -0.152 5.152 24 C -0.018 4.018 25 H 0.084 0.916 26 H 0.030 0.970 27 H 0.031 0.969 28 H 0.217 0.783 29 H 0.222 0.778 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.148 0.852 37 H 0.149 0.851 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 7.432 -19.713 -3.124 21.298 hybrid contribution 1.214 -2.341 -0.732 2.737 sum 8.646 -22.054 -3.856 24.000 Atomic orbital electron populations 1.70709 1.06860 1.31120 1.45295 1.25847 0.96457 1.02617 0.93501 0.83415 0.74482 0.74703 0.76768 1.21374 1.20850 1.21450 1.22111 0.94525 0.91630 1.57538 0.92642 1.18963 0.88471 0.82577 0.96116 1.45445 1.10353 1.04209 1.78100 1.15977 0.85232 0.80739 0.77768 1.90843 1.14070 1.83903 1.57500 1.45015 1.08552 1.04211 1.82286 1.19353 0.98328 0.80982 0.90151 0.88131 1.21836 0.98278 0.94422 1.01774 1.21531 1.02546 0.95800 0.95627 1.20415 1.00071 0.96562 0.94207 1.20479 1.01252 0.96228 0.95379 1.21488 0.96937 0.99453 0.93294 1.22133 1.01042 0.95380 1.01143 1.22809 0.96244 0.95365 0.91530 1.67715 1.08478 1.34129 1.04900 1.21640 0.94053 0.89228 0.96858 0.91614 0.96997 0.96864 0.78294 0.77778 0.90950 0.90036 0.90588 0.91053 0.90466 0.90612 0.85246 0.85086 0.83019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.24 13.65 55.43 0.76 -27.48 16 2 C 0.02 0.62 5.46 -17.82 -0.10 0.52 16 3 Si 1.08 25.17 29.90 -169.99 -5.08 20.09 16 4 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.62 -17.74 9.28 -34.44 -0.32 -18.06 16 8 H 0.06 1.51 7.60 -52.49 -0.40 1.11 16 9 C 0.26 7.30 4.74 -5.19 -0.02 7.27 16 10 N -0.73 -16.75 5.55 -66.41 -0.37 -17.12 16 11 C 0.70 15.47 7.85 -86.91 -0.68 14.79 16 12 O -0.59 -15.32 15.32 5.30 0.08 -15.24 16 13 N -0.74 -12.13 4.96 -59.94 -0.30 -12.42 16 14 C 0.22 3.13 2.62 -69.21 -0.18 2.94 16 15 H 0.10 1.66 7.58 -51.93 -0.39 1.27 16 16 C -0.12 -1.16 5.42 -26.70 -0.14 -1.31 16 17 C -0.12 -0.89 5.98 -26.68 -0.16 -1.05 16 18 C -0.07 -0.59 5.68 -28.10 -0.16 -0.75 16 19 C -0.13 -1.51 5.74 -104.60 -0.60 -2.11 16 20 C -0.09 -0.90 9.75 -39.17 -0.38 -1.28 16 21 C -0.18 -2.01 10.12 -39.52 -0.40 -2.41 16 22 C 0.10 1.49 11.19 -17.69 -0.20 1.29 16 23 N -0.44 -8.00 8.54 -9.51 -0.08 -8.08 16 24 C 0.12 1.80 6.36 -82.44 -0.52 1.28 16 25 H 0.27 8.69 7.22 -40.82 -0.29 8.39 16 26 H 0.01 0.37 8.01 -51.92 -0.42 -0.05 16 27 H 0.01 0.41 8.01 -51.93 -0.42 0.00 16 28 H 0.39 7.75 8.34 -40.82 -0.34 7.41 16 29 H 0.39 5.17 8.61 -40.82 -0.35 4.82 16 30 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.49 8.13 -51.93 -0.42 0.06 16 36 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 37 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 38 H 0.15 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 317.73 15.07 4.79 4.79 Total: -1.00 -36.65 317.73 -9.28 -45.94 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -5.21 Total: 8.40 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: -3.87 Total: 1.13 kcal Atomic # 7 Polarization: -65.12 SS G_CDS: 0.01 Total: -65.11 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: 0.08 Total: -15.24 kcal Atomic # 14 Polarization: 25.17 SS G_CDS: -5.08 Total: 20.09 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -36.65 -9.28 -45.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922229561.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.602 kcal (2) G-P(sol) polarization free energy of solvation -36.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds