Wall clock time and date at job start Mon Mar 30 2020 01:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00125 * 2 1 4 4 H 1.48503 * 109.46845 * 269.99927 * 3 2 1 5 5 H 1.48503 * 109.47399 * 29.99417 * 3 2 1 6 6 H 1.48498 * 109.47295 * 150.00023 * 3 2 1 7 7 C 1.37877 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00146 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99842 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.47011 * 179.97438 * 9 7 2 11 11 C 1.34780 * 119.99588 * 179.97438 * 10 9 7 12 12 O 1.21579 * 120.00272 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99440 * 180.02562 * 11 10 9 14 14 C 1.46497 * 119.99563 * 180.02562 * 13 11 10 15 15 H 1.08998 * 109.25951 * 324.47879 * 14 13 11 16 16 C 1.52732 * 109.25820 * 204.99671 * 14 13 11 17 17 C 1.53326 * 108.42423 * 188.42508 * 16 14 13 18 18 C 1.52763 * 108.35588 * 69.89307 * 17 16 14 19 19 C 1.50494 * 110.56540 * 309.21310 * 18 17 16 20 20 C 1.39188 * 117.97323 * 197.28657 * 19 18 17 21 21 C 1.38401 * 118.86578 * 180.25778 * 20 19 18 22 22 C 1.38243 * 118.84977 * 359.97438 * 21 20 19 23 23 N 1.31510 * 120.60382 * 359.91996 * 22 21 20 24 24 C 1.32699 * 122.40243 * 359.97438 * 23 22 21 25 25 H 0.97000 * 119.99838 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.47053 * 299.99554 * 9 7 2 27 27 H 1.08991 * 109.47398 * 59.99511 * 9 7 2 28 28 H 0.97000 * 120.00105 * 359.97438 * 10 9 7 29 29 H 0.97000 * 120.00253 * 359.97438 * 13 11 10 30 30 H 1.08994 * 109.67031 * 308.16071 * 16 14 13 31 31 H 1.09000 * 109.66951 * 68.69089 * 16 14 13 32 32 H 1.08998 * 109.68128 * 189.60813 * 17 16 14 33 33 H 1.08998 * 109.68948 * 310.17582 * 17 16 14 34 34 H 1.09005 * 109.25609 * 69.49440 * 18 17 16 35 35 H 1.09001 * 109.25684 * 188.93181 * 18 17 16 36 36 H 1.08000 * 120.56717 * 0.21038 * 20 19 18 37 37 H 1.08000 * 120.57809 * 179.97438 * 21 20 19 38 38 H 1.07999 * 119.70002 * 179.89707 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 1.7537 -4.8833 0.0011 12 8 0.5584 -5.1055 0.0011 13 7 2.6296 -5.9078 0.0016 14 6 2.1412 -7.2889 0.0016 15 1 1.2315 -7.3486 0.5990 16 6 3.2051 -8.1994 0.6114 17 6 2.7693 -9.6557 0.4111 18 6 2.8755 -9.9894 -1.0759 19 6 2.1690 -8.9493 -1.9029 20 6 1.8471 -9.2695 -3.2186 21 6 1.2020 -8.3246 -3.9975 22 6 0.8992 -7.0958 -3.4413 23 7 1.2170 -6.8291 -2.1934 24 6 1.8336 -7.7078 -1.4133 25 1 -0.4850 -0.8401 -0.0004 26 1 0.6241 -2.5567 0.8904 27 1 0.6247 -2.5570 -0.8895 28 1 3.1568 -3.4354 0.0002 29 1 3.5833 -5.7305 0.0012 30 1 4.1607 -8.0307 0.1152 31 1 3.3018 -7.9885 1.6765 32 1 3.4211 -10.3160 0.9831 33 1 1.7383 -9.7794 0.7424 34 1 3.9266 -10.0235 -1.3625 35 1 2.4218 -10.9634 -1.2590 36 1 2.0971 -10.2383 -3.6251 37 1 0.9396 -8.5436 -5.0220 38 1 0.3974 -6.3477 -4.0372 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922229561.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:26 Heat of formation + Delta-G solvation = -37.079879 kcal Electronic energy + Delta-G solvation = -20947.562415 eV Core-core repulsion = 17787.940398 eV Total energy + Delta-G solvation = -3159.622016 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.84380 -40.54697 -37.84434 -36.39395 -35.41038 -34.43149 -33.07442 -31.44024 -30.03482 -28.30400 -25.31889 -24.76248 -24.25210 -23.23591 -21.82172 -20.91699 -19.84841 -18.65622 -17.86363 -17.53191 -17.19708 -16.45988 -16.12083 -15.73932 -15.58252 -15.13284 -15.08582 -14.75068 -14.52277 -14.29821 -14.24767 -13.82491 -13.72312 -13.38208 -13.08140 -12.85635 -12.55477 -12.23604 -11.88352 -11.79728 -11.58553 -11.21364 -10.91572 -10.75441 -10.61436 -10.46587 -10.06620 -9.74961 -9.66249 -8.80186 -6.54537 0.11788 0.38528 1.54737 1.65303 1.82004 1.87460 2.34077 2.55848 2.85020 3.08865 3.27600 3.48018 3.67903 3.85019 3.88128 4.03032 4.13748 4.14335 4.32477 4.43878 4.58357 4.69877 4.76446 4.84270 4.88966 4.93893 5.00096 5.08662 5.18608 5.25458 5.33706 5.36041 5.51874 5.54176 5.59991 5.81165 6.07474 6.17866 6.37126 7.18750 7.22748 7.36415 7.78255 8.59182 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.028521 B = 0.003949 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.499567 B = 7087.873047 C = 7648.178237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.034 4.034 3 Si 1.135 2.865 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.628 4.628 8 H 0.075 0.925 9 C 0.278 3.722 10 N -0.725 5.725 11 C 0.702 3.298 12 O -0.633 6.633 13 N -0.722 5.722 14 C 0.214 3.786 15 H 0.065 0.935 16 C -0.115 4.115 17 C -0.114 4.114 18 C -0.073 4.073 19 C -0.121 4.121 20 C -0.083 4.083 21 C -0.164 4.164 22 C 0.064 3.936 23 N -0.507 5.507 24 C 0.086 3.914 25 H 0.252 0.748 26 H -0.022 1.022 27 H -0.026 1.026 28 H 0.401 0.599 29 H 0.407 0.593 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.109 0.891 33 H 0.059 0.941 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.174 0.826 37 H 0.164 0.836 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.439 -24.352 -3.929 27.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.232 4.232 3 Si 0.954 3.046 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.665 4.665 8 H 0.093 0.907 9 C 0.154 3.846 10 N -0.379 5.379 11 C 0.402 3.598 12 O -0.514 6.514 13 N -0.378 5.378 14 C 0.108 3.892 15 H 0.083 0.917 16 C -0.153 4.153 17 C -0.152 4.152 18 C -0.110 4.110 19 C -0.123 4.123 20 C -0.109 4.109 21 C -0.184 4.184 22 C -0.096 4.096 23 N -0.215 5.215 24 C -0.051 4.051 25 H 0.062 0.938 26 H -0.004 1.004 27 H -0.009 1.009 28 H 0.236 0.764 29 H 0.243 0.757 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.127 0.873 33 H 0.078 0.922 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.191 0.809 37 H 0.181 0.819 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 10.933 -22.097 -3.559 24.909 hybrid contribution 0.107 -1.767 -0.637 1.881 sum 11.041 -23.863 -4.197 26.626 Atomic orbital electron populations 1.70864 1.08286 1.29853 1.47570 1.27728 0.96349 1.07192 0.91899 0.82738 0.74145 0.69786 0.77927 1.19644 1.20856 1.18373 1.22442 0.95498 0.91679 1.56904 0.90723 1.18434 0.88707 0.84706 0.92724 1.45092 1.10357 1.03778 1.78703 1.16151 0.85242 0.81229 0.77213 1.90806 1.16572 1.84616 1.59384 1.44800 1.08624 1.04047 1.80319 1.19665 0.98836 0.80259 0.90454 0.91670 1.21856 0.97025 0.94467 1.01937 1.21570 1.02665 0.94710 0.96219 1.20564 1.01016 0.96065 0.93366 1.20917 0.99671 0.95354 0.96394 1.22022 0.95494 1.00742 0.92622 1.22430 0.99564 0.93817 1.02577 1.22916 0.98058 0.97342 0.91241 1.67545 1.10465 1.36839 1.06662 1.21769 0.95784 0.90848 0.96714 0.93832 1.00379 1.00859 0.76379 0.75712 0.89197 0.89161 0.87264 0.92195 0.88123 0.88141 0.80905 0.81893 0.83870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -60.16 13.65 21.45 0.29 -59.87 16 2 C -0.03 -1.98 5.46 84.65 0.46 -1.51 16 3 Si 1.14 49.86 29.90 68.60 2.05 51.91 16 4 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 7 C -0.63 -36.55 9.28 25.60 0.24 -36.31 16 8 H 0.07 3.99 7.60 -2.91 -0.02 3.97 16 9 C 0.28 16.51 4.74 85.63 0.41 16.92 16 10 N -0.73 -34.75 5.55 -482.29 -2.68 -37.43 16 11 C 0.70 32.60 7.85 179.05 1.41 34.01 16 12 O -0.63 -35.72 15.32 -3.97 -0.06 -35.78 16 13 N -0.72 -24.06 4.96 -461.81 -2.29 -26.35 16 14 C 0.21 6.21 2.62 44.17 0.12 6.33 16 15 H 0.07 2.32 7.58 -2.39 -0.02 2.30 16 16 C -0.11 -1.87 5.42 30.61 0.17 -1.71 16 17 C -0.11 -1.33 5.98 30.62 0.18 -1.14 16 18 C -0.07 -0.81 5.68 29.70 0.17 -0.65 16 19 C -0.12 -2.50 5.74 -19.85 -0.11 -2.62 16 20 C -0.08 -1.46 9.75 22.54 0.22 -1.24 16 21 C -0.16 -3.49 10.12 22.31 0.23 -3.26 16 22 C 0.06 1.98 11.19 84.74 0.95 2.93 16 23 N -0.51 -19.28 8.54 -184.00 -1.57 -20.86 16 24 C 0.09 2.60 6.36 42.29 0.27 2.87 16 25 H 0.25 17.10 7.22 -92.71 -0.67 16.43 16 26 H -0.02 -1.41 8.01 -2.38 -0.02 -1.43 16 27 H -0.03 -1.76 8.01 -2.39 -0.02 -1.78 16 28 H 0.40 16.28 8.34 -92.71 -0.77 15.51 16 29 H 0.41 10.54 8.61 -92.71 -0.80 9.74 16 30 H 0.09 1.19 8.10 -2.39 -0.02 1.17 16 31 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.06 0.86 8.10 -2.39 -0.02 0.84 16 34 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16 35 H 0.10 0.72 8.13 -2.39 -0.02 0.70 16 36 H 0.17 1.55 8.06 -2.91 -0.02 1.52 16 37 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 38 H 0.14 4.33 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -87.18 317.73 0.06 -87.12 By element: Atomic # 1 Polarization: 27.02 SS G_CDS: -0.38 Total: 26.64 kcal Atomic # 6 Polarization: 9.92 SS G_CDS: 4.69 Total: 14.61 kcal Atomic # 7 Polarization: -138.26 SS G_CDS: -6.24 Total: -144.51 kcal Atomic # 8 Polarization: -35.72 SS G_CDS: -0.06 Total: -35.78 kcal Atomic # 14 Polarization: 49.86 SS G_CDS: 2.05 Total: 51.91 kcal Total: -87.18 0.06 -87.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922229561.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.044 kcal (2) G-P(sol) polarization free energy of solvation -87.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds