Wall clock time and date at job start Mon Mar 30 2020 02:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86807 * 119.99777 * 2 1 4 4 H 1.48502 * 109.47148 * 270.00485 * 3 2 1 5 5 H 1.48501 * 109.46797 * 30.00502 * 3 2 1 6 6 H 1.48498 * 109.46878 * 150.00193 * 3 2 1 7 7 C 1.40051 * 120.00427 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00333 * 179.97438 * 7 2 1 9 9 C 1.46374 * 119.99919 * 0.02562 * 7 2 1 10 10 O 1.21692 * 119.99939 * 5.67436 * 9 7 2 11 11 N 1.34778 * 119.99895 * 185.68494 * 9 7 2 12 12 C 1.46925 * 120.62823 * 174.73042 * 11 9 7 13 13 C 1.53187 * 108.77614 * 233.62584 * 12 11 9 14 14 C 1.53039 * 109.31521 * 305.36848 * 13 12 11 15 15 N 1.46495 * 109.46129 * 181.38537 * 14 13 12 16 16 C 1.39003 * 120.00243 * 154.99916 * 15 14 13 17 17 C 1.39140 * 119.70197 * 0.02562 * 16 15 14 18 18 C 1.38301 * 119.09357 * 180.02562 * 17 16 15 19 19 C 1.38886 * 118.50734 * 359.97438 * 18 17 16 20 20 C 1.38026 * 119.32891 * 0.27897 * 19 18 17 21 21 N 1.31975 * 120.85260 * 359.44969 * 20 19 18 22 22 C 1.53035 * 109.53680 * 61.36418 * 14 13 12 23 23 C 1.46926 * 120.63027 * 354.75202 * 11 9 7 24 24 H 0.96996 * 120.00202 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.58783 * 113.83861 * 12 11 9 26 26 H 1.09001 * 109.70835 * 353.48966 * 12 11 9 27 27 H 1.09000 * 109.49884 * 185.41222 * 13 12 11 28 28 H 1.09001 * 109.52504 * 65.33903 * 13 12 11 29 29 H 1.09004 * 109.45725 * 301.35693 * 14 13 12 30 30 H 0.97004 * 120.00211 * 334.99803 * 15 14 13 31 31 H 1.07997 * 120.45305 * 0.02562 * 17 16 15 32 32 H 1.08003 * 120.74654 * 180.02562 * 18 17 16 33 33 H 1.07991 * 120.33535 * 180.02562 * 19 18 17 34 34 H 1.07992 * 119.57006 * 179.69466 * 20 19 18 35 35 H 1.09002 * 109.50384 * 58.58497 * 22 14 13 36 36 H 1.09000 * 109.50147 * 178.68362 * 22 14 13 37 37 H 1.09004 * 109.58207 * 246.15948 * 23 11 9 38 38 H 1.08998 * 109.58792 * 6.58303 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4880 2.0466 -1.4001 5 1 1.4380 2.6527 0.7002 6 1 3.5382 1.4402 0.7000 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2128 -0.0010 9 6 1.2752 -2.4805 -0.0017 10 8 0.0628 -2.4831 -0.1064 11 7 1.9442 -3.6449 0.1134 12 6 1.2182 -4.9169 0.2297 13 6 1.7148 -5.6559 1.4763 14 6 3.2362 -5.8048 1.4040 15 7 3.7110 -6.5402 2.5786 16 6 4.9067 -7.2466 2.5199 17 6 5.6481 -7.2505 1.3425 18 6 6.8356 -7.9579 1.2979 19 6 7.2441 -8.6400 2.4367 20 6 6.4564 -8.5973 3.5693 21 7 5.3301 -7.9096 3.5848 22 6 3.8852 -4.4192 1.3733 23 6 3.4133 -3.6662 0.1255 24 1 -0.4850 0.8400 0.0004 25 1 1.4046 -5.5262 -0.6547 26 1 0.1495 -4.7232 0.3212 27 1 1.2544 -6.6428 1.5217 28 1 1.4467 -5.0881 2.3673 29 1 3.5050 -6.3516 0.5001 30 1 3.1910 -6.5343 3.3975 31 1 5.3008 -6.7086 0.4753 32 1 7.4324 -7.9788 0.3979 33 1 8.1666 -9.2014 2.4347 34 1 6.7678 -9.1302 4.4554 35 1 3.5967 -3.8624 2.2649 36 1 4.9696 -4.5258 1.3454 37 1 3.7786 -4.1734 -0.7675 38 1 3.7933 -2.6449 0.1494 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000927084346.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:24 Heat of formation + Delta-G solvation = 5.929485 kcal Electronic energy + Delta-G solvation = -20907.599729 eV Core-core repulsion = 17749.842738 eV Total energy + Delta-G solvation = -3157.756990 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.27335 -38.74242 -36.61101 -34.44448 -32.60361 -32.41533 -31.28142 -30.45595 -28.83277 -26.39529 -24.31660 -23.51355 -22.63259 -22.08508 -20.56416 -19.04316 -17.61857 -16.90256 -16.56513 -15.87211 -15.54392 -14.82456 -14.55970 -14.41720 -14.36139 -14.04552 -13.91500 -13.39888 -13.06175 -13.03847 -12.47634 -12.00087 -11.90550 -11.65156 -11.31131 -11.17246 -11.04063 -10.91841 -10.79399 -10.40192 -10.24736 -10.23345 -9.88145 -9.68087 -9.45696 -8.89885 -7.70286 -7.61811 -7.31653 -6.24396 -4.69400 1.26839 1.44549 3.10737 3.14927 3.18180 3.20851 3.92313 4.04411 4.48295 4.51585 4.59608 4.81295 4.89721 5.07899 5.11005 5.19100 5.25246 5.38398 5.54358 5.66135 5.72360 5.74497 5.83718 5.97544 6.00499 6.07016 6.15976 6.28897 6.40386 6.42193 6.47486 6.57717 6.68686 7.06303 7.41476 7.54885 7.62040 8.08034 8.18679 8.28930 8.97823 9.36759 10.52389 10.70863 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.029915 B = 0.003895 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.756162 B = 7187.782161 C = 7697.703075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.073 0.927 9 C 0.559 3.441 10 O -0.577 6.577 11 N -0.643 5.643 12 C 0.125 3.875 13 C -0.137 4.137 14 C 0.157 3.843 15 N -0.717 5.717 16 C 0.409 3.591 17 C -0.241 4.241 18 C -0.034 4.034 19 C -0.246 4.246 20 C 0.147 3.853 21 N -0.552 5.552 22 C -0.148 4.148 23 C 0.124 3.876 24 H 0.269 0.731 25 H 0.044 0.956 26 H 0.089 0.911 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.402 0.598 31 H 0.133 0.867 32 H 0.129 0.871 33 H 0.127 0.873 34 H 0.151 0.849 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.043 0.957 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.608 -13.476 3.225 18.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.132 4.132 3 Si 0.730 3.270 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.091 0.909 9 C 0.366 3.634 10 O -0.460 6.460 11 N -0.381 5.381 12 C 0.000 4.000 13 C -0.176 4.176 14 C 0.052 3.948 15 N -0.347 5.347 16 C 0.173 3.827 17 C -0.266 4.266 18 C -0.060 4.060 19 C -0.269 4.269 20 C -0.011 4.011 21 N -0.270 5.270 22 C -0.188 4.188 23 C -0.001 4.001 24 H 0.080 0.920 25 H 0.062 0.938 26 H 0.107 0.893 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.238 0.762 31 H 0.151 0.849 32 H 0.147 0.853 33 H 0.145 0.855 34 H 0.168 0.832 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.061 0.939 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 11.161 -13.222 3.730 17.701 hybrid contribution 0.964 0.700 -0.345 1.241 sum 12.125 -12.522 3.385 17.756 Atomic orbital electron populations 1.70004 1.07080 1.27372 1.35177 1.25727 0.94610 1.00316 0.92551 0.86399 0.80188 0.81472 0.78899 1.19673 1.20436 1.18870 1.20974 0.93562 0.89251 1.54335 0.90886 1.18253 0.86882 0.82192 0.76121 1.90595 1.14479 1.86066 1.54856 1.48228 1.04601 1.05945 1.79373 1.21051 0.98899 0.85884 0.94149 1.22207 0.93452 1.00810 1.01175 1.21061 0.94479 0.91855 0.87386 1.44833 1.21071 1.52717 1.16104 1.18440 0.86730 0.88334 0.89234 1.21501 0.98263 1.07840 0.98999 1.21310 0.94305 0.92490 0.97927 1.21746 1.03177 1.06774 0.95204 1.22340 0.88524 0.92969 0.97295 1.67179 1.17754 1.13200 1.28840 1.22461 0.99758 0.95651 1.00926 1.21405 0.82624 1.01602 0.94462 0.92042 0.93806 0.89291 0.91321 0.91109 0.90335 0.76224 0.84912 0.85286 0.85544 0.83200 0.91110 0.91680 0.93919 0.88449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.64 11.84 55.55 0.66 -21.98 16 2 C 0.09 2.40 5.50 -17.37 -0.10 2.30 16 3 Si 0.91 19.71 29.56 -169.99 -5.02 14.69 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 7 C -0.54 -14.87 8.88 -35.63 -0.32 -15.19 16 8 H 0.07 1.81 5.64 -52.49 -0.30 1.51 16 9 C 0.56 15.48 7.61 -12.99 -0.10 15.38 16 10 O -0.58 -18.29 14.48 5.20 0.08 -18.22 16 11 N -0.64 -13.89 2.97 -174.43 -0.52 -14.41 16 12 C 0.13 2.29 6.41 -3.71 -0.02 2.27 16 13 C -0.14 -2.01 5.55 -26.61 -0.15 -2.16 16 14 C 0.16 2.10 2.10 -67.89 -0.14 1.96 16 15 N -0.72 -9.29 5.24 -53.89 -0.28 -9.57 16 16 C 0.41 5.46 7.63 -155.02 -1.18 4.28 16 17 C -0.24 -2.87 8.82 -39.22 -0.35 -3.21 16 18 C -0.03 -0.35 10.17 -39.32 -0.40 -0.75 16 19 C -0.25 -2.37 10.10 -39.42 -0.40 -2.77 16 20 C 0.15 1.59 11.17 -17.57 -0.20 1.39 16 21 N -0.55 -7.45 10.39 -12.44 -0.13 -7.58 16 22 C -0.15 -2.19 5.57 -26.61 -0.15 -2.34 16 23 C 0.12 2.17 6.35 -3.71 -0.02 2.15 16 24 H 0.27 7.20 8.29 -40.82 -0.34 6.86 16 25 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.09 1.86 7.04 -51.93 -0.37 1.49 16 27 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.08 1.00 6.45 -51.93 -0.34 0.67 16 30 H 0.40 5.08 8.73 -40.82 -0.36 4.73 16 31 H 0.13 1.48 6.09 -52.49 -0.32 1.16 16 32 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 33 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 34 H 0.15 1.19 8.06 -52.49 -0.42 0.76 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.06 0.87 7.67 -51.93 -0.40 0.48 16 37 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.10 1.83 5.30 -51.93 -0.28 1.55 16 LS Contribution 311.78 15.07 4.70 4.70 Total: -1.00 -33.59 311.78 -8.91 -42.49 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -4.86 Total: 6.56 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: -3.52 Total: 3.32 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: -0.27 Total: -53.54 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: 0.08 Total: -18.22 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.69 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.59 -8.91 -42.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927084346.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.423 kcal (2) G-P(sol) polarization free energy of solvation -33.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds